Wall clock time and date at job start Sat Apr 11 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47045 * 2 1 4 4 C 1.50697 * 109.47047 * 239.99556 * 2 1 3 5 5 H 1.07997 * 119.99890 * 245.66003 * 4 2 1 6 6 C 1.37883 * 119.99795 * 65.65979 * 4 2 1 7 7 N 1.31509 * 119.99915 * 197.82228 * 6 4 2 8 8 Si 1.86794 * 119.99860 * 18.09757 * 6 4 2 9 9 H 1.48504 * 109.47016 * 179.72189 * 8 6 4 10 10 H 1.48499 * 109.47347 * 299.72463 * 8 6 4 11 11 H 1.48505 * 109.47286 * 59.72709 * 8 6 4 12 12 N 1.46500 * 109.46867 * 119.99947 * 2 1 3 13 13 C 1.46502 * 120.00368 * 60.00028 * 12 2 1 14 14 C 1.34780 * 119.99656 * 240.00314 * 12 2 1 15 15 O 1.21363 * 120.00187 * 5.67265 * 14 12 2 16 16 C 1.49311 * 119.99997 * 185.68223 * 14 12 2 17 17 O 1.21386 * 120.00090 * 5.77600 * 16 14 12 18 18 N 1.34774 * 120.00288 * 185.78418 * 16 14 12 19 19 C 1.38746 * 119.99979 * 179.97438 * 18 16 14 20 20 N 1.29675 * 124.94609 * 359.69102 * 19 18 16 21 21 C 1.31916 * 116.92786 * 179.76992 * 20 19 18 22 22 C 1.33531 * 114.56061 * 0.52250 * 21 20 19 23 23 C 1.50700 * 125.96703 * 179.74807 * 22 21 20 24 24 C 1.53002 * 109.47277 * 59.99974 * 23 22 21 25 25 C 1.52999 * 109.46760 * 179.97438 * 23 22 21 26 26 C 1.53000 * 109.47287 * 299.99661 * 23 22 21 27 27 S 1.70979 * 124.94072 * 179.97438 * 19 18 16 28 28 H 1.08996 * 109.47294 * 54.27692 * 1 2 3 29 29 H 1.09004 * 109.47209 * 174.27797 * 1 2 3 30 30 H 1.09000 * 109.47075 * 294.27508 * 1 2 3 31 31 H 0.97003 * 120.00099 * 355.23535 * 7 6 4 32 32 H 1.08995 * 109.47144 * 95.61205 * 13 12 2 33 33 H 1.08996 * 109.46873 * 215.61600 * 13 12 2 34 34 H 1.08994 * 109.46925 * 335.61345 * 13 12 2 35 35 H 0.97004 * 119.99754 * 359.97438 * 18 16 14 36 36 H 1.07995 * 122.72162 * 180.24700 * 21 20 19 37 37 H 1.09004 * 109.46789 * 60.00078 * 24 23 22 38 38 H 1.08998 * 109.47357 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.46962 * 299.99973 * 24 23 22 40 40 H 1.09002 * 109.47726 * 60.00372 * 25 23 22 41 41 H 1.09011 * 109.47185 * 180.02562 * 25 23 22 42 42 H 1.09000 * 109.47611 * 299.99648 * 25 23 22 43 43 H 1.09000 * 109.46886 * 60.00068 * 26 23 22 44 44 H 1.09006 * 109.46856 * 179.97438 * 26 23 22 45 45 H 1.08995 * 109.47010 * 299.99974 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5757 -1.6388 -1.1338 6 6 1.7981 -0.1754 -2.4794 7 7 1.9106 -0.9307 -3.5500 8 14 1.3285 1.6244 -2.6512 9 1 1.1392 1.9516 -4.0873 10 1 0.0643 1.8787 -1.9147 11 1 2.4087 2.4738 -2.0883 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0017 1.1521 1.9462 16 6 3.3950 -0.7710 3.2350 17 8 3.2742 -1.9762 3.3153 18 7 4.0722 -0.0969 4.1854 19 6 4.6310 -0.7803 5.2557 20 7 4.5558 -2.0618 5.4396 21 6 5.1507 -2.5473 6.5122 22 6 5.7489 -1.6312 7.2777 23 6 6.4960 -1.8994 8.5588 24 6 7.6666 -2.8439 8.2784 25 6 7.0289 -0.5812 9.1238 26 6 5.5514 -2.5454 9.5744 27 16 5.5133 -0.0546 6.5278 28 1 -0.3634 0.6000 -0.8343 29 1 -0.3634 -1.0226 -0.1025 30 1 -0.3633 0.4225 0.9368 31 1 2.2250 -1.8447 -3.4679 32 1 2.4643 -2.7354 1.0599 33 1 1.5260 -2.2611 2.4961 34 1 0.7394 -2.3264 0.9008 35 1 4.1690 0.8662 4.1210 36 1 5.1500 -3.5998 6.7541 37 1 8.3395 -2.3835 7.5549 38 1 8.2072 -3.0375 9.2048 39 1 7.2873 -3.7830 7.8756 40 1 6.1952 0.0920 9.3235 41 1 7.5697 -0.7752 10.0502 42 1 7.7020 -0.1214 8.4002 43 1 5.1721 -3.4845 9.1715 44 1 6.0920 -2.7397 10.5008 45 1 4.7176 -1.8725 9.7741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435019248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:33 Heat of formation + Delta-G solvation = -10.907620 kcal Electronic energy + Delta-G solvation = -27051.307071 eV Core-core repulsion = 23196.677167 eV Total energy + Delta-G solvation = -3854.629905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93186 -39.80375 -38.32506 -37.16103 -36.03819 -34.67392 -32.77911 -30.31390 -29.13077 -27.79132 -27.64267 -26.63938 -26.00393 -24.86820 -23.91083 -22.14766 -20.64325 -19.66784 -19.22627 -18.09658 -17.55872 -16.94036 -16.71411 -16.15810 -16.02465 -15.37240 -15.06722 -15.02657 -14.43358 -14.19706 -14.03467 -13.90738 -13.62143 -13.25763 -12.85219 -12.71817 -12.68668 -12.60322 -12.12420 -12.09845 -11.96375 -11.83013 -11.80249 -11.69192 -11.50695 -11.36472 -11.05264 -11.01159 -10.76232 -10.56319 -10.00366 -9.83511 -9.76320 -9.43340 -9.15757 -8.93261 -8.41165 -8.33984 -7.96240 -6.56637 -4.20980 0.49072 0.73852 1.44967 1.74771 2.49238 2.79063 3.31897 3.43144 3.53168 3.55332 3.65573 4.19318 4.39453 4.41108 4.44320 4.53045 4.72717 4.91095 5.13765 5.15838 5.21900 5.34365 5.34827 5.47086 5.50881 5.56190 5.66096 5.74955 5.82813 5.88383 5.89724 6.02579 6.14064 6.23434 6.34002 6.42929 6.50093 6.67856 6.82664 6.95575 7.18682 7.53143 7.68648 7.87269 8.06368 8.26504 8.37514 8.80035 9.47759 10.82020 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.002342 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.760699 B =11953.393031 C =12264.808634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.232 3.768 3 H 0.058 0.942 4 C -0.615 4.615 5 H 0.063 0.937 6 C 0.038 3.962 7 N -0.896 5.896 8 Si 1.040 2.960 9 H -0.282 1.282 10 H -0.272 1.272 11 H -0.278 1.278 12 N -0.544 5.544 13 C 0.086 3.914 14 C 0.499 3.501 15 O -0.538 6.538 16 C 0.502 3.498 17 O -0.444 6.444 18 N -0.616 5.616 19 C 0.268 3.732 20 N -0.475 5.475 21 C 0.070 3.930 22 C -0.232 4.232 23 C 0.016 3.984 24 C -0.138 4.138 25 C -0.150 4.150 26 C -0.137 4.137 27 S 0.131 5.869 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.029 0.971 31 H 0.269 0.731 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.432 0.568 36 H 0.175 0.825 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.022 -0.173 26.810 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.131 3.869 3 H 0.076 0.924 4 C -0.653 4.653 5 H 0.082 0.918 6 C -0.169 4.169 7 N -0.529 5.529 8 Si 0.868 3.132 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.204 1.204 12 N -0.274 5.274 13 C -0.057 4.057 14 C 0.279 3.721 15 O -0.418 6.418 16 C 0.281 3.719 17 O -0.310 6.310 18 N -0.269 5.269 19 C -0.100 4.100 20 N -0.196 5.196 21 C -0.081 4.081 22 C -0.354 4.354 23 C 0.013 3.987 24 C -0.196 4.196 25 C -0.208 4.208 26 C -0.195 4.195 27 S 0.384 5.616 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.272 0.728 36 H 0.192 0.808 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.478 1.426 25.315 26.435 hybrid contribution 0.554 -1.804 1.094 2.182 sum 8.032 -0.378 26.410 27.607 Atomic orbital electron populations 1.22542 0.97968 1.01691 0.99966 1.19439 0.91020 0.94699 0.81705 0.92432 1.22138 1.41755 1.10728 0.90687 0.91846 1.25697 0.94325 1.05122 0.91711 1.70866 1.41020 1.09688 1.31332 0.84128 0.77462 0.75281 0.76371 1.20804 1.19804 1.20396 1.47989 1.45270 1.12847 1.21292 1.21932 1.01308 0.81016 1.01416 1.19521 0.81835 0.87144 0.83557 1.90712 1.61324 1.14369 1.75349 1.20991 0.79503 0.88091 0.83280 1.90832 1.52782 1.13329 1.74085 1.42827 1.52106 1.12045 1.19970 1.23655 0.99919 0.92022 0.94420 1.66587 1.22955 1.08906 1.21168 1.21469 0.96169 1.01111 0.89387 1.25741 1.11419 0.93834 1.04452 1.18950 0.94186 0.96452 0.89131 1.21916 0.96884 0.98879 1.01901 1.22007 1.01445 0.95891 1.01467 1.21911 0.98927 1.00780 0.97912 1.83891 1.51141 1.10209 1.16389 0.91298 0.92791 0.95187 0.92041 0.92345 0.90756 0.90901 0.72799 0.80817 0.92276 0.91892 0.92114 0.92090 0.91464 0.92066 0.92128 0.91897 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.74 37.16 0.32 -3.17 16 2 C 0.23 5.57 2.21 -69.08 -0.15 5.42 16 3 H 0.06 1.46 5.56 -51.93 -0.29 1.17 16 4 C -0.62 -16.89 8.67 -34.44 -0.30 -17.19 16 5 H 0.06 1.88 7.80 -52.49 -0.41 1.47 16 6 C 0.04 1.07 5.34 -17.82 -0.10 0.98 16 7 N -0.90 -26.80 13.70 55.43 0.76 -26.04 16 8 Si 1.04 24.68 26.45 -169.99 -4.50 20.18 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -5.86 5.51 56.52 0.31 -5.54 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.54 -11.76 2.75 -175.83 -0.48 -12.24 16 13 C 0.09 1.65 8.36 59.85 0.50 2.15 16 14 C 0.50 10.18 7.72 -11.65 -0.09 10.09 16 15 O -0.54 -11.67 15.83 5.49 0.09 -11.58 16 16 C 0.50 8.99 7.66 -11.65 -0.09 8.90 16 17 O -0.44 -8.64 12.01 5.47 0.07 -8.58 16 18 N -0.62 -9.00 5.39 -13.55 -0.07 -9.07 16 19 C 0.27 3.71 8.01 -87.56 -0.70 3.01 16 20 N -0.48 -7.22 8.64 -15.17 -0.13 -7.35 16 21 C 0.07 0.81 10.60 -19.16 -0.20 0.61 16 22 C -0.23 -2.20 5.15 -35.96 -0.19 -2.39 16 23 C 0.02 0.11 0.92 -155.66 -0.14 -0.04 16 24 C -0.14 -0.84 8.34 37.16 0.31 -0.53 16 25 C -0.15 -0.88 7.59 37.16 0.28 -0.60 16 26 C -0.14 -0.81 8.35 37.16 0.31 -0.50 16 27 S 0.13 1.29 21.85 -107.50 -2.35 -1.06 16 28 H 0.07 1.49 4.85 -51.93 -0.25 1.24 16 29 H 0.05 1.12 6.90 -51.93 -0.36 0.76 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.27 8.04 8.73 -40.82 -0.36 7.69 16 32 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 33 H 0.07 1.32 6.00 -51.93 -0.31 1.01 16 34 H 0.07 1.35 6.55 -51.93 -0.34 1.01 16 35 H 0.43 5.30 8.30 -40.82 -0.34 4.97 16 36 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.37 7.99 -51.93 -0.42 -0.04 16 40 H 0.06 0.37 8.00 -51.93 -0.42 -0.05 16 41 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 42 H 0.06 0.38 8.00 -51.93 -0.42 -0.04 16 43 H 0.06 0.36 7.99 -51.93 -0.42 -0.06 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -32.68 375.65 -7.77 -40.45 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.58 Total: 2.87 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.23 Total: 6.75 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.07 Total: -54.71 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.15 Total: -20.15 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -4.50 Total: 20.18 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.35 Total: -1.06 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.68 -7.77 -40.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435019248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.546 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds