Wall clock time and date at job start Sat Apr 11 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47045 * 2 1 4 4 C 1.50697 * 109.47047 * 239.99556 * 2 1 3 5 5 H 1.07997 * 119.99890 * 245.66003 * 4 2 1 6 6 C 1.37883 * 119.99795 * 65.65979 * 4 2 1 7 7 N 1.31509 * 119.99915 * 197.82228 * 6 4 2 8 8 Si 1.86794 * 119.99860 * 18.09757 * 6 4 2 9 9 H 1.48504 * 109.47016 * 179.72189 * 8 6 4 10 10 H 1.48499 * 109.47347 * 299.72463 * 8 6 4 11 11 H 1.48505 * 109.47286 * 59.72709 * 8 6 4 12 12 N 1.46500 * 109.46867 * 119.99947 * 2 1 3 13 13 C 1.46502 * 120.00368 * 60.00028 * 12 2 1 14 14 C 1.34780 * 119.99656 * 240.00314 * 12 2 1 15 15 O 1.21363 * 120.00187 * 5.67265 * 14 12 2 16 16 C 1.49311 * 119.99997 * 185.68223 * 14 12 2 17 17 O 1.21386 * 120.00090 * 5.77600 * 16 14 12 18 18 N 1.34774 * 120.00288 * 185.78418 * 16 14 12 19 19 C 1.38746 * 119.99979 * 179.97438 * 18 16 14 20 20 N 1.29675 * 124.94609 * 359.69102 * 19 18 16 21 21 C 1.31916 * 116.92786 * 179.76992 * 20 19 18 22 22 C 1.33531 * 114.56061 * 0.52250 * 21 20 19 23 23 C 1.50700 * 125.96703 * 179.74807 * 22 21 20 24 24 C 1.53002 * 109.47277 * 59.99974 * 23 22 21 25 25 C 1.52999 * 109.46760 * 179.97438 * 23 22 21 26 26 C 1.53000 * 109.47287 * 299.99661 * 23 22 21 27 27 S 1.70979 * 124.94072 * 179.97438 * 19 18 16 28 28 H 1.08996 * 109.47294 * 54.27692 * 1 2 3 29 29 H 1.09004 * 109.47209 * 174.27797 * 1 2 3 30 30 H 1.09000 * 109.47075 * 294.27508 * 1 2 3 31 31 H 0.97003 * 120.00099 * 355.23535 * 7 6 4 32 32 H 1.08995 * 109.47144 * 95.61205 * 13 12 2 33 33 H 1.08996 * 109.46873 * 215.61600 * 13 12 2 34 34 H 1.08994 * 109.46925 * 335.61345 * 13 12 2 35 35 H 0.97004 * 119.99754 * 359.97438 * 18 16 14 36 36 H 1.07995 * 122.72162 * 180.24700 * 21 20 19 37 37 H 1.09004 * 109.46789 * 60.00078 * 24 23 22 38 38 H 1.08998 * 109.47357 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.46962 * 299.99973 * 24 23 22 40 40 H 1.09002 * 109.47726 * 60.00372 * 25 23 22 41 41 H 1.09011 * 109.47185 * 180.02562 * 25 23 22 42 42 H 1.09000 * 109.47611 * 299.99648 * 25 23 22 43 43 H 1.09000 * 109.46886 * 60.00068 * 26 23 22 44 44 H 1.09006 * 109.46856 * 179.97438 * 26 23 22 45 45 H 1.08995 * 109.47010 * 299.99974 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5757 -1.6388 -1.1338 6 6 1.7981 -0.1754 -2.4794 7 7 1.9106 -0.9307 -3.5500 8 14 1.3285 1.6244 -2.6512 9 1 1.1392 1.9516 -4.0873 10 1 0.0643 1.8787 -1.9147 11 1 2.4087 2.4738 -2.0883 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0017 1.1521 1.9462 16 6 3.3950 -0.7710 3.2350 17 8 3.2742 -1.9762 3.3153 18 7 4.0722 -0.0969 4.1854 19 6 4.6310 -0.7803 5.2557 20 7 4.5558 -2.0618 5.4396 21 6 5.1507 -2.5473 6.5122 22 6 5.7489 -1.6312 7.2777 23 6 6.4960 -1.8994 8.5588 24 6 7.6666 -2.8439 8.2784 25 6 7.0289 -0.5812 9.1238 26 6 5.5514 -2.5454 9.5744 27 16 5.5133 -0.0546 6.5278 28 1 -0.3634 0.6000 -0.8343 29 1 -0.3634 -1.0226 -0.1025 30 1 -0.3633 0.4225 0.9368 31 1 2.2250 -1.8447 -3.4679 32 1 2.4643 -2.7354 1.0599 33 1 1.5260 -2.2611 2.4961 34 1 0.7394 -2.3264 0.9008 35 1 4.1690 0.8662 4.1210 36 1 5.1500 -3.5998 6.7541 37 1 8.3395 -2.3835 7.5549 38 1 8.2072 -3.0375 9.2048 39 1 7.2873 -3.7830 7.8756 40 1 6.1952 0.0920 9.3235 41 1 7.5697 -0.7752 10.0502 42 1 7.7020 -0.1214 8.4002 43 1 5.1721 -3.4845 9.1715 44 1 6.0920 -2.7397 10.5008 45 1 4.7176 -1.8725 9.7741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435019248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:32 Heat of formation + Delta-G solvation = -32.154144 kcal Electronic energy + Delta-G solvation = -27052.228390 eV Core-core repulsion = 23196.677167 eV Total energy + Delta-G solvation = -3855.551223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.26860 -40.94113 -39.69259 -38.03249 -37.61639 -35.96579 -34.79161 -32.17776 -30.05189 -28.28812 -28.12271 -28.10536 -27.34416 -26.79106 -25.21773 -23.37907 -21.86613 -20.89238 -20.41780 -19.64637 -19.32205 -18.19139 -18.01190 -17.50281 -17.35460 -16.56171 -16.23993 -16.12174 -15.71337 -15.37815 -15.05679 -14.83622 -14.80894 -14.68801 -14.55871 -14.34645 -13.89981 -13.53889 -13.44615 -13.25388 -13.17242 -13.14924 -12.67618 -12.60543 -12.56683 -12.40830 -12.31991 -12.16651 -11.85938 -11.74056 -11.64644 -11.60807 -11.19395 -10.94492 -10.51045 -10.29465 -10.27096 -9.79559 -9.28164 -8.78861 -6.45663 -0.51955 -0.19623 0.35561 0.58680 1.20588 1.43802 1.53789 1.71178 1.75460 2.09607 2.28266 2.42714 2.96558 3.02937 3.52298 3.69257 3.90339 4.03387 4.23356 4.35075 4.43637 4.47678 4.51486 4.61818 4.69326 4.70151 4.78402 4.78968 4.87949 4.88899 5.02477 5.02966 5.03184 5.05790 5.12739 5.23327 5.29107 5.41220 5.42977 5.45055 5.57531 5.69568 5.96500 6.17480 6.39570 6.48830 6.77875 6.86644 7.31544 8.56738 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.002342 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.760699 B =11953.393031 C =12264.808634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.232 3.768 3 H 0.048 0.952 4 C -0.614 4.614 5 H 0.026 0.974 6 C -0.008 4.008 7 N -0.926 5.926 8 Si 1.074 2.926 9 H -0.283 1.283 10 H -0.232 1.232 11 H -0.273 1.273 12 N -0.557 5.557 13 C 0.096 3.904 14 C 0.497 3.503 15 O -0.552 6.552 16 C 0.510 3.490 17 O -0.467 6.467 18 N -0.604 5.604 19 C 0.222 3.778 20 N -0.510 5.510 21 C 0.044 3.956 22 C -0.212 4.212 23 C 0.014 3.986 24 C -0.137 4.137 25 C -0.152 4.152 26 C -0.136 4.136 27 S 0.201 5.799 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.254 0.746 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.442 0.558 36 H 0.187 0.813 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.365 1.229 30.087 31.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.130 3.870 3 H 0.066 0.934 4 C -0.652 4.652 5 H 0.045 0.955 6 C -0.208 4.208 7 N -0.561 5.561 8 Si 0.895 3.105 9 H -0.209 1.209 10 H -0.156 1.156 11 H -0.199 1.199 12 N -0.287 5.287 13 C -0.047 4.047 14 C 0.279 3.721 15 O -0.432 6.432 16 C 0.289 3.711 17 O -0.335 6.335 18 N -0.258 5.258 19 C -0.144 4.144 20 N -0.232 5.232 21 C -0.106 4.106 22 C -0.335 4.335 23 C 0.011 3.989 24 C -0.195 4.195 25 C -0.210 4.210 26 C -0.194 4.194 27 S 0.454 5.546 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.283 0.717 36 H 0.204 0.796 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.835 2.832 28.652 29.839 hybrid contribution 0.645 -2.304 0.294 2.410 sum 8.480 0.528 28.946 30.168 Atomic orbital electron populations 1.22397 0.95500 1.02135 1.01348 1.19254 0.92812 0.93698 0.81241 0.93382 1.22261 1.40848 1.09398 0.92689 0.95544 1.27036 0.93979 1.08360 0.91459 1.70989 1.43408 1.09281 1.32378 0.83721 0.79230 0.70650 0.76863 1.20894 1.15636 1.19865 1.47990 1.46029 1.13610 1.21116 1.21903 1.00704 0.79665 1.02392 1.19949 0.81057 0.87088 0.84025 1.90685 1.61505 1.15063 1.75950 1.20365 0.79931 0.87605 0.83248 1.90820 1.54193 1.13888 1.74628 1.42526 1.51341 1.12330 1.19606 1.23793 1.02336 0.92627 0.95631 1.66512 1.23655 1.10220 1.22790 1.21646 0.97430 1.02175 0.89389 1.26327 1.09055 0.93576 1.04522 1.19149 0.94396 0.97477 0.87913 1.21924 0.96462 0.98416 1.02726 1.22045 1.01579 0.95086 1.02295 1.21914 0.98735 1.00432 0.98335 1.83644 1.48520 1.09032 1.13377 0.91322 0.92632 0.92538 0.93648 0.94056 0.89101 0.90487 0.71694 0.79608 0.92994 0.89951 0.92351 0.92088 0.89557 0.92272 0.92328 0.89992 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.38 8.74 71.98 0.63 -5.75 16 2 C 0.23 11.06 2.21 44.25 0.10 11.16 16 3 H 0.05 2.40 5.56 -2.39 -0.01 2.39 16 4 C -0.61 -34.51 8.67 25.60 0.22 -34.29 16 5 H 0.03 1.64 7.80 -2.91 -0.02 1.62 16 6 C -0.01 -0.47 5.34 84.66 0.45 -0.02 16 7 N -0.93 -56.93 13.70 21.45 0.29 -56.64 16 8 Si 1.07 49.08 26.45 68.60 1.81 50.89 16 9 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 10 H -0.23 -9.13 5.51 99.48 0.55 -8.58 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 N -0.56 -24.20 2.75 -828.56 -2.28 -26.48 16 13 C 0.10 3.73 8.36 127.77 1.07 4.80 16 14 C 0.50 20.30 7.72 87.23 0.67 20.97 16 15 O -0.55 -23.70 15.83 -3.29 -0.05 -23.75 16 16 C 0.51 18.35 7.66 87.23 0.67 19.02 16 17 O -0.47 -18.44 12.01 -3.36 -0.04 -18.48 16 18 N -0.60 -17.41 5.39 -315.12 -1.70 -19.11 16 19 C 0.22 5.99 8.01 179.28 1.44 7.43 16 20 N -0.51 -15.37 8.64 -201.91 -1.74 -17.12 16 21 C 0.04 0.98 10.60 83.61 0.89 1.86 16 22 C -0.21 -3.62 5.15 24.62 0.13 -3.49 16 23 C 0.01 0.15 0.92 -52.93 -0.05 0.10 16 24 C -0.14 -1.32 8.34 71.98 0.60 -0.72 16 25 C -0.15 -1.28 7.59 71.98 0.55 -0.74 16 26 C -0.14 -1.23 8.35 71.98 0.60 -0.63 16 27 S 0.20 3.54 21.85 -56.49 -1.23 2.31 16 28 H 0.07 2.79 4.85 -2.39 -0.01 2.78 16 29 H 0.05 2.23 6.90 -2.38 -0.02 2.21 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.25 15.91 8.73 -92.71 -0.81 15.10 16 32 H 0.04 1.72 8.09 -2.39 -0.02 1.70 16 33 H 0.09 3.24 6.00 -2.39 -0.01 3.22 16 34 H 0.08 2.88 6.55 -2.39 -0.02 2.86 16 35 H 0.44 10.51 8.30 -92.70 -0.77 9.74 16 36 H 0.19 3.43 8.06 -2.91 -0.02 3.40 16 37 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.06 0.60 7.99 -2.39 -0.02 0.58 16 40 H 0.06 0.53 8.00 -2.39 -0.02 0.51 16 41 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.06 0.54 8.00 -2.39 -0.02 0.52 16 43 H 0.06 0.57 7.99 -2.39 -0.02 0.55 16 44 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 45 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -72.40 375.65 3.07 -69.33 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.05 Total: 19.34 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 7.96 Total: 19.71 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -5.43 Total: -119.35 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.09 Total: -42.23 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.81 Total: 50.89 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.23 Total: 2.31 kcal Total: -72.40 3.07 -69.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435019248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.174 kcal (2) G-P(sol) polarization free energy of solvation -72.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds