Wall clock time and date at job start Sat Apr 11 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47199 * 2 1 4 4 C 1.50704 * 109.46918 * 119.99563 * 2 1 3 5 5 H 1.07993 * 120.00151 * 119.99851 * 4 2 1 6 6 C 1.37880 * 120.00027 * 300.00492 * 4 2 1 7 7 N 1.31515 * 120.00021 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46697 * 269.99721 * 8 6 4 10 10 H 1.48504 * 109.47277 * 29.99537 * 8 6 4 11 11 H 1.48493 * 109.47237 * 149.99565 * 8 6 4 12 12 N 1.46496 * 109.47312 * 239.99287 * 2 1 3 13 13 C 1.46497 * 120.00142 * 300.00095 * 12 2 1 14 14 C 1.34777 * 119.99726 * 120.00504 * 12 2 1 15 15 O 1.21366 * 120.00026 * 356.42266 * 14 12 2 16 16 C 1.49307 * 119.99968 * 176.42567 * 14 12 2 17 17 O 1.21384 * 120.00271 * 5.92283 * 16 14 12 18 18 N 1.34774 * 120.00226 * 185.91778 * 16 14 12 19 19 C 1.38743 * 120.00390 * 180.02562 * 18 16 14 20 20 N 1.29677 * 124.94260 * 359.69437 * 19 18 16 21 21 C 1.31910 * 116.92806 * 179.77687 * 20 19 18 22 22 C 1.33527 * 114.56731 * 0.51385 * 21 20 19 23 23 C 1.50699 * 125.97639 * 179.75327 * 22 21 20 24 24 C 1.53000 * 109.46989 * 60.00089 * 23 22 21 25 25 C 1.52998 * 109.47034 * 180.02562 * 23 22 21 26 26 C 1.53001 * 109.46872 * 299.99863 * 23 22 21 27 27 S 1.70962 * 124.94669 * 180.02562 * 19 18 16 28 28 H 1.08995 * 109.46887 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47073 * 300.00523 * 1 2 3 30 30 H 1.09004 * 109.46504 * 60.00408 * 1 2 3 31 31 H 0.97001 * 120.00553 * 180.02562 * 7 6 4 32 32 H 1.09006 * 109.47046 * 95.98661 * 13 12 2 33 33 H 1.09006 * 109.47140 * 215.97986 * 13 12 2 34 34 H 1.08994 * 109.47572 * 335.98733 * 13 12 2 35 35 H 0.97003 * 119.99799 * 0.02562 * 18 16 14 36 36 H 1.08005 * 122.72043 * 180.24563 * 21 20 19 37 37 H 1.08999 * 109.47076 * 60.00429 * 24 23 22 38 38 H 1.09000 * 109.46667 * 180.02562 * 24 23 22 39 39 H 1.08998 * 109.46807 * 299.99794 * 24 23 22 40 40 H 1.09002 * 109.47545 * 59.99987 * 25 23 22 41 41 H 1.09009 * 109.47138 * 180.02562 * 25 23 22 42 42 H 1.08999 * 109.47457 * 299.99832 * 25 23 22 43 43 H 1.09002 * 109.46878 * 60.00700 * 26 23 22 44 44 H 1.09006 * 109.46680 * 179.97438 * 26 23 22 45 45 H 1.08996 * 109.47365 * 300.00167 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3223 -1.1192 4.0081 9 1 1.3445 -2.1613 4.4125 10 1 3.6307 -1.7563 3.7123 11 1 2.4870 -0.1399 5.1121 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4277 14 6 2.7933 -0.0358 -2.0832 15 8 3.0331 1.1434 -1.9251 16 6 3.3568 -0.7609 -3.2604 17 8 3.0314 -1.9099 -3.4783 18 7 4.2266 -0.1398 -4.0814 19 6 4.7498 -0.8134 -5.1757 20 7 4.4735 -2.0396 -5.4947 21 6 5.0588 -2.5225 -6.5737 22 6 5.8775 -1.6673 -7.1912 23 6 6.6774 -1.9500 -8.4366 24 6 5.7286 -2.3115 -9.5811 25 6 7.4856 -0.7077 -8.8166 26 6 7.6308 -3.1180 -8.1761 27 16 5.8588 -0.1504 -6.2953 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 0.7092 1.1620 3.4843 32 1 0.7984 -2.1453 -2.0876 33 1 2.5059 -2.6085 -1.8914 34 1 1.4259 -2.5697 -0.4769 35 1 4.4869 0.7783 -3.9072 36 1 4.8929 -3.5297 -6.9266 37 1 5.0494 -1.4794 -9.7666 38 1 6.3073 -2.5164 -10.4818 39 1 5.1532 -3.1967 -9.3101 40 1 8.1616 -0.4505 -8.0011 41 1 8.0639 -0.9120 -9.7177 42 1 6.8068 0.1247 -9.0020 43 1 7.0553 -4.0032 -7.9053 44 1 8.2091 -3.3227 -9.0772 45 1 8.3067 -2.8604 -7.3608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435019249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:37 Heat of formation + Delta-G solvation = -9.724924 kcal Electronic energy + Delta-G solvation = -26984.676866 eV Core-core repulsion = 23130.098247 eV Total energy + Delta-G solvation = -3854.578619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85729 -39.72682 -38.19462 -37.11644 -35.88981 -34.59107 -32.78693 -29.59665 -29.05068 -27.76235 -27.61770 -26.53174 -25.81774 -25.28644 -23.88480 -22.11757 -20.66797 -19.68270 -19.23754 -18.04023 -16.92791 -16.72522 -16.33840 -16.06905 -15.82413 -15.31524 -15.05633 -14.93550 -14.45113 -14.30689 -14.16693 -13.93052 -13.41759 -13.26170 -12.69186 -12.65874 -12.53773 -12.41134 -12.07391 -11.92558 -11.92446 -11.68303 -11.65925 -11.47237 -11.14623 -11.00417 -10.89348 -10.84599 -10.79732 -10.59606 -10.33509 -10.22703 -9.70519 -9.39080 -9.26099 -8.77103 -8.49224 -8.29838 -7.78201 -6.14503 -4.23073 0.53860 0.78819 1.49471 1.84646 2.58132 2.84377 3.24302 3.31238 3.34610 3.66060 3.75493 4.22943 4.33427 4.45598 4.54251 4.55872 4.81495 4.94087 5.16609 5.17282 5.24323 5.37291 5.37664 5.49543 5.53776 5.59287 5.69470 5.78396 5.91128 5.92273 6.02601 6.13578 6.21702 6.57613 6.66638 6.72469 6.77884 6.95227 7.17052 7.34446 7.62640 7.62958 7.87617 7.97953 8.05430 8.30082 8.53296 8.82064 9.43198 10.90937 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.002272 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.966796 B =12321.301308 C =12412.363915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.254 3.746 3 H 0.067 0.933 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.547 5.547 13 C 0.067 3.933 14 C 0.497 3.503 15 O -0.537 6.537 16 C 0.502 3.498 17 O -0.447 6.447 18 N -0.616 5.616 19 C 0.269 3.731 20 N -0.476 5.476 21 C 0.070 3.930 22 C -0.234 4.234 23 C 0.016 3.984 24 C -0.137 4.137 25 C -0.150 4.150 26 C -0.137 4.137 27 S 0.130 5.870 28 H 0.033 0.967 29 H 0.097 0.903 30 H 0.013 0.987 31 H 0.265 0.735 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.433 0.567 36 H 0.174 0.826 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.242 -4.293 -22.948 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 H 0.085 0.915 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.210 1.210 12 N -0.278 5.278 13 C -0.076 4.076 14 C 0.277 3.723 15 O -0.416 6.416 16 C 0.282 3.718 17 O -0.314 6.314 18 N -0.269 5.269 19 C -0.099 4.099 20 N -0.197 5.197 21 C -0.081 4.081 22 C -0.356 4.356 23 C 0.013 3.987 24 C -0.195 4.195 25 C -0.208 4.208 26 C -0.196 4.196 27 S 0.383 5.617 28 H 0.052 0.948 29 H 0.115 0.885 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.272 0.728 36 H 0.191 0.809 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.032 -3.691 -22.441 25.277 hybrid contribution 0.145 -0.912 0.773 1.204 sum 11.176 -4.604 -21.668 24.812 Atomic orbital electron populations 1.22093 0.97452 0.99878 1.01091 1.19209 0.91461 0.94587 0.79218 0.91489 1.21278 1.32308 1.13264 0.89959 0.91942 1.24887 0.94821 0.94941 0.99007 1.69873 1.36107 1.22423 1.23986 0.86435 0.79272 0.79279 0.82090 1.20483 1.19852 1.21031 1.48285 1.44978 1.12727 1.21771 1.22208 1.01476 0.81760 1.02113 1.19466 0.82015 0.87160 0.83631 1.90723 1.60573 1.14967 1.75378 1.21185 0.79279 0.87167 0.84149 1.90761 1.55085 1.15965 1.69551 1.42889 1.43772 1.17319 1.22954 1.23671 0.98780 0.92843 0.94594 1.66590 1.26771 1.09183 1.17140 1.21463 0.94782 1.01122 0.90758 1.25726 1.08996 0.95910 1.04942 1.18944 0.93770 0.96396 0.89590 1.21910 0.98892 1.01949 0.96780 1.22005 1.00084 0.96640 1.02075 1.21914 0.98750 0.96971 1.01921 1.83898 1.42002 1.15761 1.20075 0.94775 0.88463 0.96761 0.92525 0.93291 0.89299 0.90260 0.72786 0.80860 0.92298 0.91931 0.92136 0.92069 0.91497 0.92082 0.92134 0.91929 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 2 C 0.25 6.44 2.63 -69.08 -0.18 6.26 16 3 H 0.07 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.53 -14.16 7.95 -34.44 -0.27 -14.43 16 5 H 0.06 1.66 7.43 -52.49 -0.39 1.27 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.55 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.55 -12.12 2.75 -175.82 -0.48 -12.61 16 13 C 0.07 1.30 8.49 59.85 0.51 1.81 16 14 C 0.50 10.44 7.73 -11.65 -0.09 10.35 16 15 O -0.54 -12.19 15.82 5.48 0.09 -12.11 16 16 C 0.50 9.15 7.73 -11.65 -0.09 9.06 16 17 O -0.45 -8.68 11.77 5.47 0.06 -8.62 16 18 N -0.62 -9.24 5.38 -13.55 -0.07 -9.31 16 19 C 0.27 3.80 8.01 -87.56 -0.70 3.09 16 20 N -0.48 -7.29 8.64 -15.17 -0.13 -7.42 16 21 C 0.07 0.82 10.60 -19.17 -0.20 0.62 16 22 C -0.23 -2.26 5.15 -35.96 -0.19 -2.44 16 23 C 0.02 0.11 0.92 -155.66 -0.14 -0.03 16 24 C -0.14 -0.83 8.35 37.16 0.31 -0.52 16 25 C -0.15 -0.91 7.59 37.16 0.28 -0.63 16 26 C -0.14 -0.85 8.34 37.16 0.31 -0.54 16 27 S 0.13 1.31 21.85 -107.50 -2.35 -1.03 16 28 H 0.03 0.76 7.67 -51.93 -0.40 0.36 16 29 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.69 5.36 -51.93 -0.28 1.41 16 34 H 0.08 1.55 7.12 -51.93 -0.37 1.18 16 35 H 0.43 5.56 8.30 -40.82 -0.34 5.22 16 36 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.37 7.99 -51.93 -0.42 -0.05 16 40 H 0.06 0.39 8.00 -51.93 -0.42 -0.03 16 41 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 42 H 0.06 0.38 8.00 -51.93 -0.42 -0.03 16 43 H 0.06 0.37 7.99 -51.93 -0.42 -0.04 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -31.14 380.35 -8.39 -39.53 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.63 Total: 2.83 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -0.22 Total: 11.12 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.06 Total: -53.26 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.15 Total: -20.73 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.35 Total: -1.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.14 -8.39 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435019249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.804 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds