Wall clock time and date at job start Sat Apr 11 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47199 * 2 1 4 4 C 1.50704 * 109.46918 * 119.99563 * 2 1 3 5 5 H 1.07993 * 120.00151 * 119.99851 * 4 2 1 6 6 C 1.37880 * 120.00027 * 300.00492 * 4 2 1 7 7 N 1.31515 * 120.00021 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46697 * 269.99721 * 8 6 4 10 10 H 1.48504 * 109.47277 * 29.99537 * 8 6 4 11 11 H 1.48493 * 109.47237 * 149.99565 * 8 6 4 12 12 N 1.46496 * 109.47312 * 239.99287 * 2 1 3 13 13 C 1.46497 * 120.00142 * 300.00095 * 12 2 1 14 14 C 1.34777 * 119.99726 * 120.00504 * 12 2 1 15 15 O 1.21366 * 120.00026 * 356.42266 * 14 12 2 16 16 C 1.49307 * 119.99968 * 176.42567 * 14 12 2 17 17 O 1.21384 * 120.00271 * 5.92283 * 16 14 12 18 18 N 1.34774 * 120.00226 * 185.91778 * 16 14 12 19 19 C 1.38743 * 120.00390 * 180.02562 * 18 16 14 20 20 N 1.29677 * 124.94260 * 359.69437 * 19 18 16 21 21 C 1.31910 * 116.92806 * 179.77687 * 20 19 18 22 22 C 1.33527 * 114.56731 * 0.51385 * 21 20 19 23 23 C 1.50699 * 125.97639 * 179.75327 * 22 21 20 24 24 C 1.53000 * 109.46989 * 60.00089 * 23 22 21 25 25 C 1.52998 * 109.47034 * 180.02562 * 23 22 21 26 26 C 1.53001 * 109.46872 * 299.99863 * 23 22 21 27 27 S 1.70962 * 124.94669 * 180.02562 * 19 18 16 28 28 H 1.08995 * 109.46887 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47073 * 300.00523 * 1 2 3 30 30 H 1.09004 * 109.46504 * 60.00408 * 1 2 3 31 31 H 0.97001 * 120.00553 * 180.02562 * 7 6 4 32 32 H 1.09006 * 109.47046 * 95.98661 * 13 12 2 33 33 H 1.09006 * 109.47140 * 215.97986 * 13 12 2 34 34 H 1.08994 * 109.47572 * 335.98733 * 13 12 2 35 35 H 0.97003 * 119.99799 * 0.02562 * 18 16 14 36 36 H 1.08005 * 122.72043 * 180.24563 * 21 20 19 37 37 H 1.08999 * 109.47076 * 60.00429 * 24 23 22 38 38 H 1.09000 * 109.46667 * 180.02562 * 24 23 22 39 39 H 1.08998 * 109.46807 * 299.99794 * 24 23 22 40 40 H 1.09002 * 109.47545 * 59.99987 * 25 23 22 41 41 H 1.09009 * 109.47138 * 180.02562 * 25 23 22 42 42 H 1.08999 * 109.47457 * 299.99832 * 25 23 22 43 43 H 1.09002 * 109.46878 * 60.00700 * 26 23 22 44 44 H 1.09006 * 109.46680 * 179.97438 * 26 23 22 45 45 H 1.08996 * 109.47365 * 300.00167 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3223 -1.1192 4.0081 9 1 1.3445 -2.1613 4.4125 10 1 3.6307 -1.7563 3.7123 11 1 2.4870 -0.1399 5.1121 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4277 14 6 2.7933 -0.0358 -2.0832 15 8 3.0331 1.1434 -1.9251 16 6 3.3568 -0.7609 -3.2604 17 8 3.0314 -1.9099 -3.4783 18 7 4.2266 -0.1398 -4.0814 19 6 4.7498 -0.8134 -5.1757 20 7 4.4735 -2.0396 -5.4947 21 6 5.0588 -2.5225 -6.5737 22 6 5.8775 -1.6673 -7.1912 23 6 6.6774 -1.9500 -8.4366 24 6 5.7286 -2.3115 -9.5811 25 6 7.4856 -0.7077 -8.8166 26 6 7.6308 -3.1180 -8.1761 27 16 5.8588 -0.1504 -6.2953 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 0.7092 1.1620 3.4843 32 1 0.7984 -2.1453 -2.0876 33 1 2.5059 -2.6085 -1.8914 34 1 1.4259 -2.5697 -0.4769 35 1 4.4869 0.7783 -3.9072 36 1 4.8929 -3.5297 -6.9266 37 1 5.0494 -1.4794 -9.7666 38 1 6.3073 -2.5164 -10.4818 39 1 5.1532 -3.1967 -9.3101 40 1 8.1616 -0.4505 -8.0011 41 1 8.0639 -0.9120 -9.7177 42 1 6.8068 0.1247 -9.0020 43 1 7.0553 -4.0032 -7.9053 44 1 8.2091 -3.3227 -9.0772 45 1 8.3067 -2.8604 -7.3608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435019249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:36 Heat of formation + Delta-G solvation = -28.250691 kcal Electronic energy + Delta-G solvation = -26985.480204 eV Core-core repulsion = 23130.098247 eV Total energy + Delta-G solvation = -3855.381956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.21198 -40.88261 -39.60884 -37.99878 -37.51452 -35.93127 -34.70910 -31.50236 -30.00893 -28.26526 -28.08626 -28.01268 -27.36868 -27.12908 -25.19158 -23.39217 -21.95262 -20.91595 -20.38857 -19.32161 -18.50499 -18.08001 -17.92793 -17.44472 -17.20902 -16.77457 -16.19189 -16.08038 -16.03763 -15.21397 -15.04364 -14.80306 -14.67206 -14.63936 -14.39765 -14.05693 -13.60568 -13.46251 -13.17402 -13.13641 -13.03709 -12.76967 -12.72522 -12.64882 -12.55110 -12.38073 -12.30141 -12.25518 -12.13727 -12.12642 -11.71601 -11.58850 -11.25271 -10.86619 -10.56724 -10.27087 -10.17645 -9.59436 -9.24321 -8.18844 -6.35250 -0.48623 -0.16761 0.42303 0.61604 1.26765 1.42287 1.43514 1.53685 1.80365 2.15481 2.32234 2.45297 3.07240 3.10665 3.54801 3.71583 3.92247 4.05152 4.36914 4.42374 4.53850 4.62467 4.68690 4.70960 4.80110 4.80474 4.85119 4.90610 4.96310 5.00117 5.04705 5.04818 5.12466 5.17956 5.29456 5.35384 5.37257 5.42935 5.44839 5.58374 5.61715 5.89584 6.06802 6.29441 6.52610 6.68251 6.87402 6.91606 7.35181 8.86011 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.002272 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.966796 B =12321.301308 C =12412.363915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.259 3.741 3 H 0.027 0.973 4 C -0.544 4.544 5 H 0.060 0.940 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.966 3.034 9 H -0.269 1.269 10 H -0.273 1.273 11 H -0.282 1.282 12 N -0.558 5.558 13 C 0.075 3.925 14 C 0.493 3.507 15 O -0.561 6.561 16 C 0.513 3.487 17 O -0.463 6.463 18 N -0.606 5.606 19 C 0.224 3.776 20 N -0.508 5.508 21 C 0.045 3.955 22 C -0.213 4.213 23 C 0.014 3.986 24 C -0.136 4.136 25 C -0.152 4.152 26 C -0.137 4.137 27 S 0.195 5.805 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.023 0.977 31 H 0.267 0.733 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.440 0.560 36 H 0.189 0.811 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.864 -5.308 -24.905 28.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.158 3.842 3 H 0.045 0.955 4 C -0.582 4.582 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.197 1.197 11 H -0.207 1.207 12 N -0.288 5.288 13 C -0.067 4.067 14 C 0.274 3.726 15 O -0.441 6.441 16 C 0.292 3.708 17 O -0.332 6.332 18 N -0.259 5.259 19 C -0.142 4.142 20 N -0.230 5.230 21 C -0.105 4.105 22 C -0.335 4.335 23 C 0.011 3.989 24 C -0.194 4.194 25 C -0.210 4.210 26 C -0.195 4.195 27 S 0.449 5.551 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.281 0.719 36 H 0.206 0.794 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.676 -4.703 -24.440 27.931 hybrid contribution -0.232 -0.562 1.173 1.321 sum 12.444 -5.264 -23.267 26.906 Atomic orbital electron populations 1.21903 0.96469 1.00366 1.00505 1.18869 0.92184 0.92746 0.80387 0.95530 1.21486 1.32545 1.13329 0.90875 0.92206 1.25677 0.94906 0.95575 1.01802 1.69993 1.36825 1.23491 1.24723 0.85436 0.78776 0.78287 0.78408 1.19403 1.19743 1.20745 1.48247 1.45534 1.13719 1.21317 1.22243 1.02221 0.80122 1.02113 1.19969 0.81342 0.87004 0.84253 1.90695 1.61155 1.16110 1.76185 1.20394 0.79988 0.86715 0.83745 1.90743 1.56158 1.16290 1.70024 1.42571 1.42947 1.17509 1.22917 1.23782 1.01263 0.93631 0.95571 1.66516 1.27700 1.10216 1.18542 1.21664 0.95916 1.02266 0.90685 1.26315 1.07113 0.95242 1.04845 1.19145 0.93932 0.97370 0.88468 1.21914 0.98806 1.01669 0.97035 1.22044 1.00070 0.95964 1.02939 1.21920 0.98514 0.96387 1.02649 1.83681 1.39102 1.14769 1.17594 0.93613 0.90551 0.95749 0.92347 0.91924 0.88779 0.90681 0.71873 0.79436 0.92882 0.90005 0.92236 0.92280 0.89566 0.92209 0.92246 0.89992 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 8.97 71.98 0.65 -5.84 16 2 C 0.26 13.48 2.63 44.25 0.12 13.60 16 3 H 0.03 1.60 6.90 -2.39 -0.02 1.58 16 4 C -0.54 -29.56 7.95 25.60 0.20 -29.36 16 5 H 0.06 3.21 7.43 -2.91 -0.02 3.19 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -51.37 11.32 21.45 0.24 -51.12 16 8 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.56 -25.25 2.75 -828.54 -2.28 -27.53 16 13 C 0.07 2.90 8.49 127.77 1.08 3.98 16 14 C 0.49 21.25 7.73 87.22 0.67 21.93 16 15 O -0.56 -26.36 15.82 -3.30 -0.05 -26.41 16 16 C 0.51 18.93 7.73 87.23 0.67 19.61 16 17 O -0.46 -18.14 11.77 -3.35 -0.04 -18.18 16 18 N -0.61 -18.26 5.38 -315.14 -1.70 -19.96 16 19 C 0.22 6.19 8.01 179.28 1.44 7.62 16 20 N -0.51 -15.35 8.64 -201.92 -1.74 -17.10 16 21 C 0.05 1.00 10.60 83.61 0.89 1.89 16 22 C -0.21 -3.69 5.15 24.62 0.13 -3.56 16 23 C 0.01 0.15 0.92 -52.93 -0.05 0.11 16 24 C -0.14 -1.27 8.35 71.98 0.60 -0.67 16 25 C -0.15 -1.36 7.59 71.98 0.55 -0.81 16 26 C -0.14 -1.30 8.34 71.98 0.60 -0.70 16 27 S 0.20 3.61 21.85 -56.49 -1.23 2.37 16 28 H 0.04 2.05 7.67 -2.39 -0.02 2.03 16 29 H 0.08 4.03 6.07 -2.39 -0.01 4.02 16 30 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.09 3.58 5.36 -2.48 -0.01 3.57 16 34 H 0.07 2.93 7.12 -2.39 -0.02 2.92 16 35 H 0.44 11.39 8.30 -92.71 -0.77 10.62 16 36 H 0.19 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.06 0.58 7.99 -2.39 -0.02 0.56 16 40 H 0.06 0.57 8.00 -2.39 -0.02 0.55 16 41 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.06 0.56 8.00 -2.39 -0.02 0.54 16 43 H 0.06 0.59 7.99 -2.39 -0.02 0.58 16 44 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -67.99 380.35 3.46 -64.53 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.24 Total: 19.22 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: 7.99 Total: 29.36 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -5.48 Total: -115.70 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.09 Total: -44.59 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.23 Total: 2.37 kcal Total: -67.99 3.46 -64.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435019249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.281 kcal (2) G-P(sol) polarization free energy of solvation -67.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds