Wall clock time and date at job start Sat Apr 11 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46922 * 2 1 4 4 C 1.50700 * 109.46752 * 119.99489 * 2 1 3 5 5 H 1.07999 * 119.99784 * 119.99961 * 4 2 1 6 6 C 1.37874 * 120.00137 * 300.00057 * 4 2 1 7 7 N 1.31515 * 120.00228 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99804 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47142 * 90.00210 * 8 6 4 10 10 H 1.48502 * 109.46981 * 209.99967 * 8 6 4 11 11 H 1.48497 * 109.47152 * 330.00021 * 8 6 4 12 12 N 1.46489 * 109.47192 * 239.99625 * 2 1 3 13 13 C 1.46504 * 120.00051 * 300.00106 * 12 2 1 14 14 S 1.65606 * 120.00129 * 120.00353 * 12 2 1 15 15 O 1.42105 * 106.40008 * 336.45751 * 14 12 2 16 16 O 1.42098 * 106.40370 * 203.53936 * 14 12 2 17 17 N 1.65595 * 107.22013 * 89.99663 * 14 12 2 18 18 C 1.47426 * 125.64604 * 90.02347 * 17 14 12 19 19 C 1.54905 * 104.83324 * 204.09337 * 18 17 14 20 20 C 1.55156 * 101.58338 * 322.99160 * 19 18 17 21 21 C 1.47017 * 125.65191 * 269.72070 * 17 14 12 22 22 H 1.08998 * 109.88206 * 59.55698 * 21 17 14 23 23 C 1.50699 * 109.88339 * 298.39389 * 21 17 14 24 24 C 1.38225 * 119.61929 * 154.72344 * 23 21 17 25 25 C 1.38634 * 119.15930 * 179.75465 * 24 23 21 26 26 C 1.38679 * 118.41968 * 0.51088 * 25 24 23 27 27 C 1.38188 * 119.16163 * 359.73514 * 26 25 24 28 28 N 1.31856 * 119.61713 * 335.00169 * 23 21 17 29 29 H 1.09007 * 109.46548 * 59.99994 * 1 2 3 30 30 H 1.08997 * 109.47190 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47136 * 300.00499 * 1 2 3 32 32 H 0.96996 * 119.99921 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47095 * 270.00091 * 13 12 2 34 34 H 1.08991 * 109.46942 * 30.00504 * 13 12 2 35 35 H 1.09009 * 109.46796 * 150.00143 * 13 12 2 36 36 H 1.09001 * 110.36883 * 322.93237 * 18 17 14 37 37 H 1.09001 * 110.36401 * 85.25938 * 18 17 14 38 38 H 1.09005 * 111.00493 * 81.06668 * 19 18 17 39 39 H 1.09001 * 111.00744 * 204.91642 * 19 18 17 40 40 H 1.08998 * 110.72302 * 153.85947 * 20 19 18 41 41 H 1.08996 * 110.72594 * 276.96197 * 20 19 18 42 42 H 1.08000 * 120.42409 * 359.97438 * 24 23 21 43 43 H 1.08003 * 120.79152 * 180.21924 * 25 24 23 44 44 H 1.07998 * 120.41632 * 179.71064 * 26 25 24 45 45 H 1.08000 * 119.61541 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8304 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5457 4.4125 10 1 1.3429 -0.9490 5.1121 11 1 2.4856 -2.5660 3.7121 12 7 2.0184 -0.6906 -1.1960 13 6 1.6644 -2.0933 -1.4278 14 16 2.9705 0.1141 -2.2861 15 8 2.6905 1.4972 -2.1193 16 8 2.8229 -0.5647 -3.5258 17 7 4.5438 -0.1043 -1.8179 18 6 5.4237 -1.2056 -2.2494 19 6 6.4855 -1.3275 -1.1281 20 6 6.7036 0.1595 -0.7426 21 6 5.2964 0.7715 -0.9079 22 1 4.7977 0.8163 0.0603 23 6 5.4020 2.1542 -1.4978 24 6 5.5767 3.2417 -0.6627 25 6 5.6778 4.5088 -1.2159 26 6 5.5881 4.6365 -2.5939 27 6 5.4079 3.5038 -3.3647 28 7 5.3210 2.3132 -2.8042 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7089 1.1616 3.4843 33 1 2.4157 -2.7377 -0.9714 34 1 0.6905 -2.3002 -0.9846 35 1 1.6239 -2.2853 -2.5001 36 1 4.8565 -2.1323 -2.3370 37 1 5.9006 -0.9605 -3.1984 38 1 6.0982 -1.8973 -0.2835 39 1 7.4057 -1.7716 -1.5079 40 1 7.0448 0.2445 0.2891 41 1 7.4117 0.6342 -1.4218 42 1 5.6373 3.1056 0.4070 43 1 5.8182 5.3765 -0.5883 44 1 5.6579 5.6088 -3.0586 45 1 5.3376 3.5947 -4.4386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549021141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:52 Heat of formation + Delta-G solvation = -28.965463 kcal Electronic energy + Delta-G solvation = -29680.973252 eV Core-core repulsion = 25825.560301 eV Total energy + Delta-G solvation = -3855.412951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.14746 -37.89083 -36.53463 -36.08868 -35.05587 -32.58817 -32.24197 -31.78122 -30.58971 -29.03812 -28.05785 -25.52711 -25.12634 -23.52242 -23.19702 -21.57614 -20.94469 -20.55447 -18.37742 -17.31757 -16.99021 -16.52257 -16.34496 -15.90589 -15.44848 -15.34003 -14.94919 -14.41636 -13.99385 -13.68784 -13.47239 -13.27117 -13.06110 -13.00647 -12.96312 -12.72044 -12.31458 -11.92369 -11.84247 -11.68679 -11.40488 -11.32332 -11.21386 -11.14052 -11.10917 -10.97501 -10.96788 -10.83056 -10.61912 -10.42942 -10.24586 -10.00998 -9.62874 -9.28854 -9.22608 -8.80690 -8.51208 -8.48037 -7.90596 -6.09719 -4.18160 1.28131 1.37843 1.53801 3.21751 3.30085 3.32084 3.60798 3.99650 4.26240 4.33967 4.42134 4.65239 4.85077 4.90216 5.02002 5.15918 5.20101 5.23116 5.27745 5.38447 5.55376 5.68074 5.73429 5.79269 5.84181 5.90288 5.92741 5.96088 6.12929 6.18135 6.23173 6.34154 6.37067 6.38600 6.58100 6.65200 6.76712 6.86692 6.91732 6.94065 7.12661 7.54097 7.65361 7.79274 8.05429 8.27299 8.28152 8.85771 9.48098 10.95129 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.005465 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.099318 B = 5121.860973 C = 5574.507393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.057 0.943 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.994 5.994 13 C 0.100 3.900 14 S 2.800 3.200 15 O -0.971 6.971 16 O -0.997 6.997 17 N -0.998 5.998 18 C 0.129 3.871 19 C -0.128 4.128 20 C -0.114 4.114 21 C 0.203 3.797 22 H 0.104 0.896 23 C 0.133 3.867 24 C -0.159 4.159 25 C -0.074 4.074 26 C -0.182 4.182 27 C 0.102 3.898 28 N -0.470 5.470 29 H 0.012 0.988 30 H 0.033 0.967 31 H 0.093 0.907 32 H 0.263 0.737 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.729 1.057 -6.185 13.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.075 0.925 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.836 5.836 13 C -0.047 4.047 14 S 2.811 3.189 15 O -0.955 6.955 16 O -0.981 6.981 17 N -0.834 5.834 18 C 0.003 3.997 19 C -0.167 4.167 20 C -0.153 4.153 21 C 0.094 3.906 22 H 0.121 0.879 23 C -0.007 4.007 24 C -0.179 4.179 25 C -0.100 4.100 26 C -0.202 4.202 27 C -0.055 4.055 28 N -0.179 5.179 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.106 0.937 -7.379 13.367 hybrid contribution 0.358 0.228 1.815 1.864 sum 11.465 1.165 -5.564 12.797 Atomic orbital electron populations 1.22064 0.98157 0.99565 1.00743 1.18692 0.91762 0.92623 0.80389 0.92547 1.21392 1.31710 1.12990 0.90114 0.91962 1.24924 0.95017 0.94982 0.98912 1.69887 1.36271 1.22675 1.23715 0.86567 0.78573 0.80030 0.82616 1.20662 1.21237 1.19926 1.57868 1.64214 1.21431 1.40060 1.21243 1.01732 0.82019 0.99713 1.01323 0.71466 0.73301 0.72845 1.93562 1.83431 1.31888 1.86577 1.93500 1.85893 1.76644 1.42065 1.58996 1.28483 1.35141 1.60795 1.21826 0.91631 0.89075 0.97174 1.22781 0.98769 0.96169 0.98979 1.22595 0.94690 0.95681 1.02332 1.20188 0.93493 0.84226 0.92644 0.87873 1.21526 0.93736 0.95840 0.89573 1.21851 1.01744 0.93013 1.01320 1.21483 0.96059 0.97348 0.95099 1.22036 1.03252 1.00044 0.94840 1.22637 0.94930 0.87754 1.00169 1.67306 1.11534 1.26483 1.12620 0.96936 0.94839 0.88894 0.92700 0.93946 0.90703 0.92251 0.91186 0.91721 0.90144 0.90362 0.89881 0.90906 0.84668 0.85086 0.85285 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.95 37.16 0.33 -3.21 16 2 C 0.27 6.64 2.62 -69.09 -0.18 6.46 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.52 -13.28 8.37 -34.44 -0.29 -13.57 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.09 11.32 55.43 0.63 -23.47 16 8 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.99 -21.62 3.12 -115.85 -0.36 -21.98 16 13 C 0.10 1.86 9.90 59.85 0.59 2.46 16 14 S 2.80 60.26 6.12 -107.50 -0.66 59.60 16 15 O -0.97 -23.55 14.48 -57.17 -0.83 -24.38 16 16 O -1.00 -22.46 16.33 -57.17 -0.93 -23.40 16 17 N -1.00 -17.85 3.06 -105.63 -0.32 -18.18 16 18 C 0.13 1.85 6.98 -2.53 -0.02 1.83 16 19 C -0.13 -1.47 7.09 -24.59 -0.17 -1.65 16 20 C -0.11 -1.39 6.47 -24.89 -0.16 -1.55 16 21 C 0.20 3.33 3.31 -68.10 -0.23 3.10 16 22 H 0.10 1.83 8.11 -51.93 -0.42 1.41 16 23 C 0.13 2.26 4.50 -82.59 -0.37 1.88 16 24 C -0.16 -2.39 9.77 -39.44 -0.39 -2.77 16 25 C -0.07 -0.97 10.18 -39.27 -0.40 -1.37 16 26 C -0.18 -2.34 10.11 -39.44 -0.40 -2.73 16 27 C 0.10 1.53 11.18 -17.55 -0.20 1.33 16 28 N -0.47 -8.32 8.87 -9.47 -0.08 -8.40 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.03 0.75 6.66 -51.93 -0.35 0.41 16 31 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.38 6.43 -51.93 -0.33 1.05 16 35 H 0.06 1.04 7.02 -51.92 -0.36 0.67 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.85 7.84 -51.93 -0.41 0.45 16 42 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 44 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -32.88 373.12 -10.66 -43.54 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.73 Total: 4.27 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.97 Total: -8.22 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -0.14 Total: -72.03 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -1.76 Total: -47.78 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 60.26 SS G_CDS: -0.66 Total: 59.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.88 -10.66 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549021141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.575 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds