Wall clock time and date at job start Sat Apr 11 2020 05:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46922 * 2 1 4 4 C 1.50700 * 109.46752 * 119.99489 * 2 1 3 5 5 H 1.07999 * 119.99784 * 119.99961 * 4 2 1 6 6 C 1.37874 * 120.00137 * 300.00057 * 4 2 1 7 7 N 1.31515 * 120.00228 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99804 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47142 * 90.00210 * 8 6 4 10 10 H 1.48502 * 109.46981 * 209.99967 * 8 6 4 11 11 H 1.48497 * 109.47152 * 330.00021 * 8 6 4 12 12 N 1.46489 * 109.47192 * 239.99625 * 2 1 3 13 13 C 1.46504 * 120.00051 * 300.00106 * 12 2 1 14 14 S 1.65606 * 120.00129 * 120.00353 * 12 2 1 15 15 O 1.42105 * 106.40008 * 336.45751 * 14 12 2 16 16 O 1.42098 * 106.40370 * 203.53936 * 14 12 2 17 17 N 1.65595 * 107.22013 * 89.99663 * 14 12 2 18 18 C 1.47426 * 125.64604 * 90.02347 * 17 14 12 19 19 C 1.54905 * 104.83324 * 204.09337 * 18 17 14 20 20 C 1.55156 * 101.58338 * 322.99160 * 19 18 17 21 21 C 1.47017 * 125.65191 * 269.72070 * 17 14 12 22 22 H 1.08998 * 109.88206 * 59.55698 * 21 17 14 23 23 C 1.50699 * 109.88339 * 298.39389 * 21 17 14 24 24 C 1.38225 * 119.61929 * 154.72344 * 23 21 17 25 25 C 1.38634 * 119.15930 * 179.75465 * 24 23 21 26 26 C 1.38679 * 118.41968 * 0.51088 * 25 24 23 27 27 C 1.38188 * 119.16163 * 359.73514 * 26 25 24 28 28 N 1.31856 * 119.61713 * 335.00169 * 23 21 17 29 29 H 1.09007 * 109.46548 * 59.99994 * 1 2 3 30 30 H 1.08997 * 109.47190 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47136 * 300.00499 * 1 2 3 32 32 H 0.96996 * 119.99921 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47095 * 270.00091 * 13 12 2 34 34 H 1.08991 * 109.46942 * 30.00504 * 13 12 2 35 35 H 1.09009 * 109.46796 * 150.00143 * 13 12 2 36 36 H 1.09001 * 110.36883 * 322.93237 * 18 17 14 37 37 H 1.09001 * 110.36401 * 85.25938 * 18 17 14 38 38 H 1.09005 * 111.00493 * 81.06668 * 19 18 17 39 39 H 1.09001 * 111.00744 * 204.91642 * 19 18 17 40 40 H 1.08998 * 110.72302 * 153.85947 * 20 19 18 41 41 H 1.08996 * 110.72594 * 276.96197 * 20 19 18 42 42 H 1.08000 * 120.42409 * 359.97438 * 24 23 21 43 43 H 1.08003 * 120.79152 * 180.21924 * 25 24 23 44 44 H 1.07998 * 120.41632 * 179.71064 * 26 25 24 45 45 H 1.08000 * 119.61541 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8304 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5457 4.4125 10 1 1.3429 -0.9490 5.1121 11 1 2.4856 -2.5660 3.7121 12 7 2.0184 -0.6906 -1.1960 13 6 1.6644 -2.0933 -1.4278 14 16 2.9705 0.1141 -2.2861 15 8 2.6905 1.4972 -2.1193 16 8 2.8229 -0.5647 -3.5258 17 7 4.5438 -0.1043 -1.8179 18 6 5.4237 -1.2056 -2.2494 19 6 6.4855 -1.3275 -1.1281 20 6 6.7036 0.1595 -0.7426 21 6 5.2964 0.7715 -0.9079 22 1 4.7977 0.8163 0.0603 23 6 5.4020 2.1542 -1.4978 24 6 5.5767 3.2417 -0.6627 25 6 5.6778 4.5088 -1.2159 26 6 5.5881 4.6365 -2.5939 27 6 5.4079 3.5038 -3.3647 28 7 5.3210 2.3132 -2.8042 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.7089 1.1616 3.4843 33 1 2.4157 -2.7377 -0.9714 34 1 0.6905 -2.3002 -0.9846 35 1 1.6239 -2.2853 -2.5001 36 1 4.8565 -2.1323 -2.3370 37 1 5.9006 -0.9605 -3.1984 38 1 6.0982 -1.8973 -0.2835 39 1 7.4057 -1.7716 -1.5079 40 1 7.0448 0.2445 0.2891 41 1 7.4117 0.6342 -1.4218 42 1 5.6373 3.1056 0.4070 43 1 5.8182 5.3765 -0.5883 44 1 5.6579 5.6088 -3.0586 45 1 5.3376 3.5947 -4.4386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549021141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:52 Heat of formation + Delta-G solvation = -50.574515 kcal Electronic energy + Delta-G solvation = -29681.910291 eV Core-core repulsion = 25825.560301 eV Total energy + Delta-G solvation = -3856.349990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27330 -39.03765 -38.30312 -37.89792 -36.83433 -34.50531 -33.33396 -32.90566 -31.77560 -30.92742 -29.16769 -27.32810 -26.98151 -24.64843 -24.31392 -22.82188 -22.45297 -21.95860 -19.86278 -18.89040 -18.49311 -18.34092 -17.77522 -17.19673 -16.90235 -16.57641 -16.42955 -15.93572 -15.25853 -15.23952 -14.90842 -14.71942 -14.57337 -14.38020 -14.12298 -13.97574 -13.63668 -13.49698 -13.36455 -13.23389 -13.16055 -12.92808 -12.91569 -12.77261 -12.64507 -12.59625 -12.24715 -12.22631 -12.14026 -12.03813 -11.86680 -11.58738 -11.18858 -10.74053 -10.48802 -10.40369 -10.02808 -9.76395 -9.62679 -8.07319 -6.22748 -0.33074 0.23484 0.45315 1.46418 1.48796 1.57945 2.06047 2.46905 2.61098 2.90574 3.20683 3.23187 3.36791 3.70631 3.83277 3.91537 4.07097 4.09457 4.20881 4.27239 4.33046 4.43663 4.63719 4.66024 4.69068 4.76215 4.80505 4.85855 4.90500 4.93956 4.94802 5.03297 5.07943 5.11207 5.13768 5.15326 5.29869 5.33138 5.43305 5.48728 5.61524 5.75815 5.85834 5.86717 6.10088 6.29533 6.86176 7.14192 7.47094 8.97375 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.005465 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.099318 B = 5121.860973 C = 5574.507393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.277 3.723 3 H 0.020 0.980 4 C -0.525 4.525 5 H 0.068 0.932 6 C 0.018 3.982 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.265 1.265 12 N -1.001 6.001 13 C 0.094 3.906 14 S 2.809 3.191 15 O -1.005 7.005 16 O -1.012 7.012 17 N -0.998 5.998 18 C 0.116 3.884 19 C -0.116 4.116 20 C -0.104 4.104 21 C 0.195 3.805 22 H 0.079 0.921 23 C 0.107 3.893 24 C -0.177 4.177 25 C -0.076 4.076 26 C -0.175 4.175 27 C 0.079 3.921 28 N -0.504 5.504 29 H 0.014 0.986 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.263 0.737 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.145 0.855 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.710 0.365 -5.698 14.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.172 3.828 3 H 0.038 0.962 4 C -0.565 4.565 5 H 0.086 0.914 6 C -0.181 4.181 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.190 1.190 12 N -0.842 5.842 13 C -0.051 4.051 14 S 2.821 3.179 15 O -0.990 6.990 16 O -0.997 6.997 17 N -0.838 5.838 18 C -0.009 4.009 19 C -0.154 4.154 20 C -0.143 4.143 21 C 0.087 3.913 22 H 0.097 0.903 23 C -0.032 4.032 24 C -0.197 4.197 25 C -0.101 4.101 26 C -0.195 4.195 27 C -0.078 4.078 28 N -0.213 5.213 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.163 0.837 43 H 0.182 0.818 44 H 0.184 0.816 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.088 0.222 -6.913 14.803 hybrid contribution -0.248 0.511 1.584 1.683 sum 12.840 0.733 -5.329 13.921 Atomic orbital electron populations 1.21968 0.98159 1.00052 0.99803 1.18360 0.91709 0.91160 0.81532 0.96228 1.21561 1.31541 1.12957 0.90417 0.91421 1.25680 0.95125 0.95550 1.01761 1.70027 1.37415 1.24064 1.24280 0.85557 0.78028 0.79256 0.78790 1.19870 1.21563 1.18972 1.57783 1.64994 1.22514 1.38922 1.21435 1.02361 0.80615 1.00731 1.00738 0.72211 0.72392 0.72554 1.93505 1.84466 1.34046 1.86946 1.93466 1.86611 1.76724 1.42855 1.58687 1.27544 1.36535 1.60992 1.22156 0.92036 0.88101 0.98568 1.22784 0.99088 0.95715 0.97850 1.22604 0.92132 0.95811 1.03748 1.20353 0.95253 0.84619 0.91082 0.90288 1.21659 0.95102 0.96497 0.89907 1.22120 1.02128 0.93640 1.01835 1.21939 0.94763 0.97633 0.95813 1.22437 1.01300 1.00966 0.94755 1.23148 0.95196 0.87924 1.01545 1.67242 1.12809 1.28146 1.13140 0.96726 0.93532 0.90957 0.92774 0.92184 0.90582 0.91084 0.90660 0.91408 0.90050 0.87000 0.87923 0.90253 0.83736 0.81808 0.81644 0.81414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.95 8.95 71.98 0.64 -6.31 16 2 C 0.28 14.00 2.62 44.25 0.12 14.11 16 3 H 0.02 1.15 6.91 -2.38 -0.02 1.13 16 4 C -0.53 -26.73 8.37 25.60 0.21 -26.52 16 5 H 0.07 3.31 7.65 -2.91 -0.02 3.28 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.92 -50.71 11.32 21.45 0.24 -50.47 16 8 Si 0.96 40.54 29.54 68.60 2.03 42.56 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 12 N -1.00 -43.99 3.12 -520.45 -1.62 -45.61 16 13 C 0.09 3.45 9.90 127.77 1.27 4.72 16 14 S 2.81 123.48 6.12 -56.49 -0.35 123.14 16 15 O -1.01 -50.84 14.48 -128.00 -1.85 -52.70 16 16 O -1.01 -46.07 16.33 -128.00 -2.09 -48.16 16 17 N -1.00 -35.88 3.06 -488.12 -1.49 -37.37 16 18 C 0.12 3.20 6.98 86.85 0.61 3.81 16 19 C -0.12 -2.37 7.09 31.98 0.23 -2.15 16 20 C -0.10 -2.37 6.47 31.79 0.21 -2.17 16 21 C 0.19 6.45 3.31 44.60 0.15 6.59 16 22 H 0.08 2.92 8.11 -2.39 -0.02 2.90 16 23 C 0.11 3.69 4.50 42.55 0.19 3.88 16 24 C -0.18 -5.31 9.77 22.36 0.22 -5.09 16 25 C -0.08 -1.87 10.18 22.47 0.23 -1.64 16 26 C -0.18 -4.21 10.11 22.36 0.23 -3.98 16 27 C 0.08 2.32 11.18 84.67 0.95 3.27 16 28 N -0.50 -18.01 8.87 -183.89 -1.63 -19.64 16 29 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.05 2.12 6.66 -2.39 -0.02 2.10 16 31 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 32 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 2.74 6.43 -2.39 -0.02 2.73 16 35 H 0.07 2.42 7.02 -2.38 -0.02 2.41 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.08 1.73 7.84 -2.39 -0.02 1.71 16 42 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 43 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 44 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 45 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -72.46 373.12 -0.10 -72.56 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.98 Total: 25.76 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 5.69 Total: -10.08 kcal Atomic # 7 Polarization: -148.58 SS G_CDS: -4.50 Total: -153.09 kcal Atomic # 8 Polarization: -96.91 SS G_CDS: -3.94 Total: -100.86 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 16 Polarization: 123.48 SS G_CDS: -0.35 Total: 123.14 kcal Total: -72.46 -0.10 -72.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549021141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.981 kcal (2) G-P(sol) polarization free energy of solvation -72.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds