Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47439 * 2 1 4 4 C 1.50702 * 109.47090 * 239.99847 * 2 1 3 5 5 H 1.08001 * 120.00019 * 240.00307 * 4 2 1 6 6 C 1.37876 * 120.00102 * 60.00013 * 4 2 1 7 7 N 1.31507 * 119.99694 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00107 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47238 * 59.99721 * 8 6 4 10 10 H 1.48500 * 109.47264 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46947 * 299.99775 * 8 6 4 12 12 N 1.46509 * 109.47177 * 120.00118 * 2 1 3 13 13 C 1.46493 * 119.99981 * 59.99680 * 12 2 1 14 14 S 1.65592 * 119.99800 * 239.99962 * 12 2 1 15 15 O 1.42097 * 106.40513 * 156.45885 * 14 12 2 16 16 O 1.42105 * 106.40357 * 23.53505 * 14 12 2 17 17 N 1.65603 * 107.22007 * 269.99781 * 14 12 2 18 18 C 1.47022 * 125.64889 * 90.02052 * 17 14 12 19 19 C 1.54326 * 107.27333 * 178.89802 * 18 17 14 20 20 C 1.55157 * 102.94181 * 337.81146 * 19 18 17 21 21 H 1.09003 * 111.00261 * 277.38869 * 20 19 18 22 22 C 1.50695 * 111.00490 * 153.57303 * 20 19 18 23 23 C 1.38678 * 120.41675 * 121.70761 * 22 20 19 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 20 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 C 1.47425 * 125.64727 * 269.97777 * 17 14 12 29 29 H 1.09004 * 109.47596 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47428 * 300.00097 * 1 2 3 31 31 H 1.08999 * 109.47326 * 60.00171 * 1 2 3 32 32 H 0.97010 * 119.99968 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47241 * 269.99927 * 13 12 2 34 34 H 1.09006 * 109.47351 * 30.00166 * 13 12 2 35 35 H 1.08998 * 109.47525 * 150.00267 * 13 12 2 36 36 H 1.08996 * 109.87997 * 59.48307 * 18 17 14 37 37 H 1.09005 * 109.88605 * 298.32035 * 18 17 14 38 38 H 1.08998 * 110.72084 * 219.44423 * 19 18 17 39 39 H 1.09006 * 110.71555 * 96.16948 * 19 18 17 40 40 H 1.07994 * 120.78944 * 359.96926 * 23 22 20 41 41 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 42 42 H 1.07999 * 119.61987 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 44 44 H 1.08994 * 110.37143 * 85.33455 * 28 17 14 45 45 H 1.08996 * 110.36730 * 323.00106 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5204 -4.0077 10 1 1.8259 -0.4208 -5.2205 11 1 3.8063 -1.1210 -4.0081 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1141 2.2862 15 8 2.8228 -0.5646 3.5259 16 8 2.6904 1.4973 2.1192 17 7 4.5437 -0.1043 1.8180 18 6 5.2947 0.7685 0.9037 19 6 6.7204 0.1896 0.7853 20 6 6.8614 -0.6543 2.0797 21 1 7.1428 -0.0276 2.9259 22 6 7.8505 -1.7750 1.8887 23 6 8.9654 -1.8746 2.7074 24 6 9.8510 -2.9191 2.4918 25 6 9.5925 -3.8232 1.4786 26 7 8.5189 -3.7005 0.7229 27 6 7.6551 -2.7197 0.8993 28 6 5.4236 -1.2056 2.2497 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7087 1.1611 -3.4845 33 1 0.7375 -2.1443 1.9994 34 1 1.5294 -2.5969 0.4708 35 1 2.4627 -2.5819 1.9864 36 1 5.3376 1.7797 1.3082 37 1 4.8162 0.7788 -0.0756 38 1 7.4607 0.9893 0.7637 39 1 6.8078 -0.4424 -0.0985 40 1 9.1418 -1.1531 3.4913 41 1 10.7320 -3.0250 3.1075 42 1 10.2777 -4.6395 1.3039 43 1 6.7872 -2.6515 0.2601 44 1 5.2754 -2.0802 1.6164 45 1 5.2343 -1.4555 3.2936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592069195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = -35.443375 kcal Electronic energy + Delta-G solvation = -28523.315329 eV Core-core repulsion = 24667.621474 eV Total energy + Delta-G solvation = -3855.693855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.55765 -38.22247 -36.72537 -36.14068 -35.27404 -33.33995 -32.61623 -32.10445 -29.82175 -29.08706 -28.34871 -25.51602 -25.19366 -24.09354 -23.51103 -22.11518 -20.73117 -20.54327 -18.51633 -17.47130 -17.32797 -16.82107 -16.65538 -16.41622 -15.59155 -15.35713 -14.86520 -14.59204 -14.09866 -13.84165 -13.67527 -13.41146 -13.30509 -13.25265 -13.03466 -12.95338 -12.67182 -12.26770 -12.00281 -11.81225 -11.71862 -11.54914 -11.40204 -11.28676 -11.22447 -11.12908 -10.98461 -10.88460 -10.75313 -10.45725 -10.22998 -10.08927 -9.97337 -9.58468 -9.33688 -9.08838 -8.70714 -8.50001 -7.97583 -6.11267 -4.20124 0.89128 1.07605 1.17119 3.24392 3.30644 3.31434 3.44067 3.59371 4.04865 4.23899 4.33653 4.45469 4.51883 4.59576 4.72452 4.78572 4.89129 5.03593 5.08174 5.19170 5.32539 5.40848 5.44887 5.57351 5.60979 5.68103 5.80230 5.86004 5.93360 5.97223 6.14593 6.16937 6.26212 6.28284 6.40763 6.50654 6.55690 6.69699 6.86743 6.89632 7.10627 7.47652 7.60448 7.76202 7.81114 8.03118 8.24098 8.82939 9.46428 10.93592 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.004271 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.977340 B = 6553.775580 C = 8000.066736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.989 5.989 13 C 0.107 3.893 14 S 2.794 3.206 15 O -0.995 6.995 16 O -0.975 6.975 17 N -1.018 6.018 18 C 0.120 3.880 19 C -0.118 4.118 20 C -0.057 4.057 21 H 0.094 0.906 22 C -0.119 4.119 23 C -0.072 4.072 24 C -0.173 4.173 25 C 0.090 3.910 26 N -0.482 5.482 27 C 0.106 3.894 28 C 0.127 3.873 29 H 0.032 0.968 30 H 0.012 0.988 31 H 0.093 0.907 32 H 0.264 0.736 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.153 0.847 43 H 0.159 0.841 44 H 0.068 0.932 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.082 -4.924 8.682 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.805 3.195 15 O -0.979 6.979 16 O -0.960 6.960 17 N -0.856 5.856 18 C -0.005 4.005 19 C -0.157 4.157 20 C -0.078 4.078 21 H 0.113 0.887 22 C -0.122 4.122 23 C -0.098 4.098 24 C -0.193 4.193 25 C -0.067 4.067 26 N -0.190 5.190 27 C -0.051 4.051 28 C 0.001 3.999 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.170 0.830 43 H 0.176 0.824 44 H 0.086 0.914 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.435 -4.892 8.655 17.528 hybrid contribution 0.605 -0.133 -0.585 0.852 sum 15.040 -5.026 8.069 17.793 Atomic orbital electron populations 1.22056 0.97966 0.99673 1.00746 1.18729 0.91885 0.92667 0.80221 0.92428 1.21331 1.31995 1.13146 0.90124 0.91956 1.24910 0.94917 0.94940 0.98936 1.69871 1.36065 1.22577 1.23933 0.86612 0.79180 0.79732 0.82159 1.20267 1.21264 1.20218 1.57804 1.63934 1.21461 1.39970 1.21174 0.98890 0.82026 1.01824 1.01491 0.71608 0.73398 0.73022 1.93530 1.85767 1.76474 1.42109 1.93578 1.83425 1.32153 1.86805 1.59188 1.29264 1.36196 1.60953 1.21697 0.91137 0.93210 0.94456 1.22754 0.96501 0.99519 0.96902 1.21300 0.92699 0.94192 0.99621 0.88729 1.20695 0.96571 0.97712 0.97173 1.21518 0.93070 0.97317 0.97879 1.22127 1.00811 0.96347 1.00016 1.22785 0.94389 0.97970 0.91542 1.67750 1.03102 1.21793 1.26337 1.22781 0.97536 0.89358 0.95380 1.22005 0.87735 0.89713 1.00401 0.94870 0.96928 0.88883 0.92565 0.93876 0.90178 0.93344 0.91414 0.89967 0.90092 0.90165 0.84821 0.84898 0.82962 0.82396 0.91424 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.97 37.15 0.33 -3.11 16 2 C 0.27 6.45 2.62 -69.08 -0.18 6.27 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.53 -13.19 7.99 -34.44 -0.28 -13.46 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.13 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.96 11.32 55.43 0.63 -23.34 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.99 -20.49 3.12 -115.85 -0.36 -20.85 16 13 C 0.11 1.92 9.28 59.84 0.56 2.48 16 14 S 2.79 55.25 6.30 -107.50 -0.68 54.57 16 15 O -0.99 -20.41 16.53 -57.17 -0.95 -21.35 16 16 O -0.98 -22.24 16.28 -57.17 -0.93 -23.17 16 17 N -1.02 -16.33 3.76 -111.42 -0.42 -16.75 16 18 C 0.12 1.76 6.99 -3.06 -0.02 1.74 16 19 C -0.12 -1.31 6.37 -24.90 -0.16 -1.47 16 20 C -0.06 -0.60 3.28 -89.62 -0.29 -0.90 16 21 H 0.09 0.88 8.01 -51.93 -0.42 0.46 16 22 C -0.12 -1.21 5.01 -104.48 -0.52 -1.73 16 23 C -0.07 -0.62 9.83 -39.28 -0.39 -1.00 16 24 C -0.17 -1.38 10.11 -39.44 -0.40 -1.78 16 25 C 0.09 0.85 11.18 -17.54 -0.20 0.66 16 26 N -0.48 -5.88 10.36 -13.25 -0.14 -6.01 16 27 C 0.11 1.23 9.48 -17.55 -0.17 1.07 16 28 C 0.13 1.66 6.52 -2.52 -0.02 1.65 16 29 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 35 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.90 7.12 -51.93 -0.37 0.53 16 40 H 0.13 0.85 8.04 -52.49 -0.42 0.43 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.16 1.81 7.03 -52.49 -0.37 1.44 16 44 H 0.07 0.85 6.76 -51.93 -0.35 0.50 16 45 H 0.08 1.04 7.78 -51.93 -0.40 0.63 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -31.57 374.12 -10.70 -42.27 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.65 Total: 1.92 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.82 Total: -7.99 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.29 Total: -66.96 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.88 Total: -44.52 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 55.25 SS G_CDS: -0.68 Total: 54.57 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.57 -10.70 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592069195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.829 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds