Wall clock time and date at job start Sat Apr 11 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47439 * 2 1 4 4 C 1.50702 * 109.47090 * 239.99847 * 2 1 3 5 5 H 1.08001 * 120.00019 * 240.00307 * 4 2 1 6 6 C 1.37876 * 120.00102 * 60.00013 * 4 2 1 7 7 N 1.31507 * 119.99694 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00107 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47238 * 59.99721 * 8 6 4 10 10 H 1.48500 * 109.47264 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46947 * 299.99775 * 8 6 4 12 12 N 1.46509 * 109.47177 * 120.00118 * 2 1 3 13 13 C 1.46493 * 119.99981 * 59.99680 * 12 2 1 14 14 S 1.65592 * 119.99800 * 239.99962 * 12 2 1 15 15 O 1.42097 * 106.40513 * 156.45885 * 14 12 2 16 16 O 1.42105 * 106.40357 * 23.53505 * 14 12 2 17 17 N 1.65603 * 107.22007 * 269.99781 * 14 12 2 18 18 C 1.47022 * 125.64889 * 90.02052 * 17 14 12 19 19 C 1.54326 * 107.27333 * 178.89802 * 18 17 14 20 20 C 1.55157 * 102.94181 * 337.81146 * 19 18 17 21 21 H 1.09003 * 111.00261 * 277.38869 * 20 19 18 22 22 C 1.50695 * 111.00490 * 153.57303 * 20 19 18 23 23 C 1.38678 * 120.41675 * 121.70761 * 22 20 19 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 20 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 C 1.47425 * 125.64727 * 269.97777 * 17 14 12 29 29 H 1.09004 * 109.47596 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47428 * 300.00097 * 1 2 3 31 31 H 1.08999 * 109.47326 * 60.00171 * 1 2 3 32 32 H 0.97010 * 119.99968 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47241 * 269.99927 * 13 12 2 34 34 H 1.09006 * 109.47351 * 30.00166 * 13 12 2 35 35 H 1.08998 * 109.47525 * 150.00267 * 13 12 2 36 36 H 1.08996 * 109.87997 * 59.48307 * 18 17 14 37 37 H 1.09005 * 109.88605 * 298.32035 * 18 17 14 38 38 H 1.08998 * 110.72084 * 219.44423 * 19 18 17 39 39 H 1.09006 * 110.71555 * 96.16948 * 19 18 17 40 40 H 1.07994 * 120.78944 * 359.96926 * 23 22 20 41 41 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 42 42 H 1.07999 * 119.61987 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 44 44 H 1.08994 * 110.37143 * 85.33455 * 28 17 14 45 45 H 1.08996 * 110.36730 * 323.00106 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5204 -4.0077 10 1 1.8259 -0.4208 -5.2205 11 1 3.8063 -1.1210 -4.0081 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1141 2.2862 15 8 2.8228 -0.5646 3.5259 16 8 2.6904 1.4973 2.1192 17 7 4.5437 -0.1043 1.8180 18 6 5.2947 0.7685 0.9037 19 6 6.7204 0.1896 0.7853 20 6 6.8614 -0.6543 2.0797 21 1 7.1428 -0.0276 2.9259 22 6 7.8505 -1.7750 1.8887 23 6 8.9654 -1.8746 2.7074 24 6 9.8510 -2.9191 2.4918 25 6 9.5925 -3.8232 1.4786 26 7 8.5189 -3.7005 0.7229 27 6 7.6551 -2.7197 0.8993 28 6 5.4236 -1.2056 2.2497 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.7087 1.1611 -3.4845 33 1 0.7375 -2.1443 1.9994 34 1 1.5294 -2.5969 0.4708 35 1 2.4627 -2.5819 1.9864 36 1 5.3376 1.7797 1.3082 37 1 4.8162 0.7788 -0.0756 38 1 7.4607 0.9893 0.7637 39 1 6.8078 -0.4424 -0.0985 40 1 9.1418 -1.1531 3.4913 41 1 10.7320 -3.0250 3.1075 42 1 10.2777 -4.6395 1.3039 43 1 6.7872 -2.6515 0.2601 44 1 5.2754 -2.0802 1.6164 45 1 5.2343 -1.4555 3.2936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592069195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:39 Heat of formation + Delta-G solvation = -56.322438 kcal Electronic energy + Delta-G solvation = -28524.220713 eV Core-core repulsion = 24667.621474 eV Total energy + Delta-G solvation = -3856.599239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.31953 -39.23703 -38.39578 -37.89831 -36.95082 -34.51778 -34.22878 -32.83886 -30.98146 -30.80146 -29.30794 -27.26425 -27.02340 -24.90593 -24.29269 -23.25218 -22.51033 -21.43241 -19.96942 -18.86546 -18.53258 -18.32555 -18.04299 -17.53651 -17.04515 -16.44533 -16.42133 -15.69078 -15.28922 -15.02896 -14.86657 -14.70821 -14.58692 -14.44268 -14.30736 -13.93652 -13.83650 -13.71332 -13.47667 -13.34061 -13.20563 -13.17008 -13.00861 -12.76660 -12.69550 -12.68696 -12.40996 -12.23918 -12.14202 -12.07629 -11.91847 -11.68287 -11.21640 -10.66997 -10.49501 -10.32266 -10.01236 -9.84102 -9.66603 -8.09140 -6.23994 -0.40544 0.19161 0.40910 1.46155 1.47128 1.54061 1.95008 2.44918 2.53830 2.85325 3.18936 3.19659 3.48178 3.61702 3.78601 3.81949 4.05645 4.08013 4.11231 4.19052 4.27489 4.38157 4.49954 4.58233 4.67037 4.69251 4.75754 4.85825 4.90190 4.93039 4.94355 4.96757 5.01003 5.10133 5.14175 5.21045 5.24040 5.28419 5.39265 5.44643 5.60618 5.72263 5.83758 5.85147 6.09573 6.28301 6.84657 7.09042 7.45722 8.95291 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.004271 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.977340 B = 6553.775580 C = 8000.066736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.274 3.726 3 H 0.025 0.975 4 C -0.528 4.528 5 H 0.067 0.933 6 C 0.021 3.979 7 N -0.917 5.917 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.271 1.271 12 N -0.998 5.998 13 C 0.102 3.898 14 S 2.807 3.193 15 O -1.002 7.002 16 O -1.011 7.011 17 N -1.016 6.016 18 C 0.114 3.886 19 C -0.108 4.108 20 C -0.043 4.043 21 H 0.115 0.885 22 C -0.123 4.123 23 C -0.070 4.070 24 C -0.165 4.165 25 C 0.079 3.921 26 N -0.517 5.517 27 C 0.087 3.913 28 C 0.118 3.882 29 H 0.043 0.957 30 H 0.018 0.982 31 H 0.071 0.929 32 H 0.264 0.736 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.174 0.826 43 H 0.147 0.853 44 H 0.069 0.931 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.777 -6.157 9.716 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.170 3.830 3 H 0.042 0.958 4 C -0.568 4.568 5 H 0.085 0.915 6 C -0.179 4.179 7 N -0.556 5.556 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.839 5.839 13 C -0.044 4.044 14 S 2.818 3.182 15 O -0.986 6.986 16 O -0.996 6.996 17 N -0.857 5.857 18 C -0.011 4.011 19 C -0.147 4.147 20 C -0.064 4.064 21 H 0.133 0.867 22 C -0.125 4.125 23 C -0.096 4.096 24 C -0.184 4.184 25 C -0.078 4.078 26 N -0.225 5.225 27 C -0.069 4.069 28 C -0.007 4.007 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.179 0.821 41 H 0.184 0.816 42 H 0.191 0.809 43 H 0.164 0.836 44 H 0.087 0.913 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.119 -6.148 9.706 20.617 hybrid contribution -0.152 0.210 -0.838 0.877 sum 16.967 -5.938 8.868 20.045 Atomic orbital electron populations 1.21951 0.97961 1.00027 0.99951 1.18388 0.91880 0.91329 0.81387 0.95754 1.21546 1.31606 1.13048 0.90576 0.91491 1.25626 0.95133 0.95530 1.01634 1.70004 1.37284 1.23935 1.24374 0.85663 0.78825 0.78700 0.78729 1.19681 1.21440 1.19577 1.57731 1.64885 1.22489 1.38824 1.21352 1.00307 0.80589 1.02152 1.00865 0.72172 0.72420 0.72710 1.93510 1.86323 1.76370 1.42400 1.93526 1.84437 1.34378 1.87219 1.58882 1.28298 1.37414 1.61103 1.21828 0.92899 0.93628 0.92755 1.22723 0.94432 1.00215 0.97314 1.21225 0.91027 0.94301 0.99801 0.86657 1.20591 0.97232 0.97252 0.97472 1.21884 0.92128 0.97819 0.97747 1.22488 1.01446 0.95152 0.99331 1.23268 0.93925 0.99005 0.91586 1.67703 1.04357 1.22584 1.27900 1.22704 0.97676 0.90287 0.96261 1.22276 0.88906 0.88941 1.00560 0.93818 0.96331 0.91055 0.92710 0.92960 0.90531 0.91008 0.91076 0.92707 0.87489 0.90524 0.82067 0.81591 0.80858 0.83607 0.91288 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.76 8.97 71.98 0.65 -6.11 16 2 C 0.27 13.56 2.62 44.24 0.12 13.67 16 3 H 0.02 1.37 6.91 -2.39 -0.02 1.36 16 4 C -0.53 -26.80 7.99 25.60 0.20 -26.59 16 5 H 0.07 3.27 7.33 -2.91 -0.02 3.24 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.92 -50.73 11.32 21.45 0.24 -50.48 16 8 Si 0.95 41.34 29.54 68.60 2.03 43.37 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 N -1.00 -41.68 3.12 -520.45 -1.62 -43.31 16 13 C 0.10 3.57 9.28 127.77 1.19 4.75 16 14 S 2.81 111.81 6.30 -56.49 -0.36 111.46 16 15 O -1.00 -40.47 16.53 -128.00 -2.12 -42.58 16 16 O -1.01 -47.43 16.28 -128.00 -2.08 -49.51 16 17 N -1.02 -32.35 3.76 -506.42 -1.90 -34.25 16 18 C 0.11 3.33 6.99 86.73 0.61 3.94 16 19 C -0.11 -2.23 6.37 31.78 0.20 -2.02 16 20 C -0.04 -0.80 3.28 -10.15 -0.03 -0.83 16 21 H 0.12 1.71 8.01 -2.39 -0.02 1.69 16 22 C -0.12 -2.21 5.01 -19.77 -0.10 -2.31 16 23 C -0.07 -0.94 9.83 22.47 0.22 -0.71 16 24 C -0.16 -2.01 10.11 22.36 0.23 -1.78 16 25 C 0.08 1.30 11.18 84.69 0.95 2.25 16 26 N -0.52 -12.03 10.36 -195.83 -2.03 -14.06 16 27 C 0.09 1.94 9.48 84.67 0.80 2.74 16 28 C 0.12 2.93 6.52 86.86 0.57 3.50 16 29 H 0.04 1.96 7.67 -2.38 -0.02 1.94 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 32 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.73 7.02 -2.38 -0.02 2.71 16 35 H 0.07 2.15 7.79 -2.39 -0.02 2.13 16 36 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.65 7.12 -2.38 -0.02 1.64 16 40 H 0.16 1.25 8.04 -2.91 -0.02 1.22 16 41 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 42 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.15 3.40 7.03 -2.91 -0.02 3.38 16 44 H 0.07 1.69 6.76 -2.39 -0.02 1.68 16 45 H 0.08 2.03 7.78 -2.39 -0.02 2.02 16 Total: -1.00 -69.01 374.12 -0.82 -69.83 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.99 Total: 17.53 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 6.04 Total: -7.99 kcal Atomic # 7 Polarization: -136.79 SS G_CDS: -5.31 Total: -142.10 kcal Atomic # 8 Polarization: -87.89 SS G_CDS: -4.20 Total: -92.09 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 111.81 SS G_CDS: -0.36 Total: 111.46 kcal Total: -69.01 -0.82 -69.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592069195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.504 kcal (2) G-P(sol) polarization free energy of solvation -69.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds