Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47450 * 2 1 4 4 C 1.53005 * 109.47381 * 120.00174 * 2 1 3 5 5 C 1.50697 * 109.47173 * 295.00226 * 4 2 1 6 6 O 1.21292 * 119.99820 * 359.97438 * 5 4 2 7 7 N 1.34767 * 120.00429 * 179.97438 * 5 4 2 8 8 C 1.47028 * 125.64560 * 0.02562 * 7 5 4 9 9 C 1.54327 * 107.27008 * 181.02200 * 8 7 5 10 10 C 1.55151 * 102.94096 * 22.19749 * 9 8 7 11 11 O 1.42898 * 111.00893 * 82.60699 * 10 9 8 12 12 C 1.50702 * 111.00254 * 206.41887 * 10 9 8 13 13 H 1.08000 * 119.99978 * 118.54693 * 12 10 9 14 14 C 1.37870 * 120.00197 * 298.54738 * 12 10 9 15 15 N 1.31518 * 120.00172 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 120.00299 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47135 * 89.99670 * 16 14 12 18 18 H 1.48497 * 109.47285 * 210.00246 * 16 14 12 19 19 H 1.48502 * 109.46807 * 330.00063 * 16 14 12 20 20 C 1.47425 * 125.65327 * 179.71524 * 7 5 4 21 21 C 1.50703 * 109.47119 * 240.00081 * 2 1 3 22 22 C 1.38228 * 119.98815 * 299.97669 * 21 2 1 23 23 C 1.38185 * 120.04921 * 180.02562 * 22 21 2 24 24 C 1.38492 * 120.02825 * 0.02562 * 23 22 21 25 25 F 1.35098 * 120.01655 * 179.97438 * 24 23 22 26 26 C 1.38399 * 119.97296 * 359.97438 * 24 23 22 27 27 C 1.38440 * 119.95071 * 359.97438 * 26 24 23 28 28 F 1.35101 * 120.01291 * 180.27612 * 27 26 24 29 29 H 1.08996 * 109.46796 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46647 * 299.99588 * 1 2 3 31 31 H 1.08999 * 109.46775 * 59.99585 * 1 2 3 32 32 H 1.09000 * 109.47053 * 54.99750 * 4 2 1 33 33 H 1.09000 * 109.47322 * 175.00095 * 4 2 1 34 34 H 1.08995 * 109.88300 * 300.44483 * 8 7 5 35 35 H 1.09006 * 109.88172 * 61.60968 * 8 7 5 36 36 H 1.09004 * 110.71764 * 140.55870 * 9 8 7 37 37 H 1.08997 * 110.72327 * 263.65384 * 9 8 7 38 38 H 0.96707 * 114.00056 * 61.44721 * 11 10 9 39 39 H 0.97002 * 120.00418 * 180.02562 * 15 14 12 40 40 H 1.09000 * 110.36332 * 274.74609 * 20 7 5 41 41 H 1.09001 * 110.36244 * 37.06474 * 20 7 5 42 42 H 1.08000 * 119.97482 * 0.02562 * 22 21 2 43 43 H 1.08003 * 119.98465 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.02520 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 8 1.0117 1.0873 2.3633 7 7 1.9845 -0.3920 3.7001 8 6 2.7438 -1.6194 3.9807 9 6 2.8738 -1.7373 5.5139 10 6 1.6952 -0.8705 6.0303 11 8 0.4733 -1.6113 6.0241 12 6 1.9867 -0.3265 7.4051 13 1 2.0371 0.7406 7.5642 14 6 2.1890 -1.1909 8.4600 15 7 2.1272 -2.4903 8.2665 16 14 2.5510 -0.5166 10.1640 17 1 1.2758 -0.3146 10.8976 18 1 3.4023 -1.4800 10.9071 19 1 3.2627 0.7810 10.0419 20 6 1.6663 0.2696 4.9786 21 6 2.0323 -0.7104 -1.2305 22 6 1.6987 -2.0339 -1.4488 23 6 2.1590 -2.6867 -2.5764 24 6 2.9558 -2.0156 -3.4889 25 9 3.4062 -2.6542 -4.5910 26 6 3.2905 -0.6904 -3.2714 27 6 2.8279 -0.0371 -2.1419 28 9 3.1493 1.2581 -1.9312 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 3.1264 -0.7995 1.2056 34 1 2.2098 -2.4839 3.5863 35 1 3.7335 -1.5545 3.5286 36 1 2.7588 -2.7735 5.8321 37 1 3.8289 -1.3353 5.8520 38 1 0.4833 -2.3913 6.5957 39 1 2.2691 -3.0985 9.0087 40 1 2.4175 1.0240 5.2126 41 1 0.6749 0.7207 4.9358 42 1 1.0777 -2.5582 -0.7375 43 1 1.8980 -3.7209 -2.7457 44 1 3.9115 -0.1661 -3.9827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -159.379408 kcal Electronic energy + Delta-G solvation = -29326.743668 eV Core-core repulsion = 24879.542406 eV Total energy + Delta-G solvation = -4447.201262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -49.31493 -49.24035 -40.00170 -39.14768 -37.42834 -35.01540 -34.30557 -32.26117 -31.15331 -30.28856 -29.54443 -28.50983 -27.49682 -25.05199 -24.09468 -23.24993 -22.30992 -20.72455 -19.71213 -18.72125 -18.50820 -17.57391 -17.23508 -16.79867 -16.27048 -16.11186 -15.58925 -15.55508 -15.50429 -14.99938 -14.93591 -14.74075 -14.48505 -14.16575 -13.96437 -13.45879 -13.27163 -13.03739 -12.92239 -12.55513 -12.27012 -12.15961 -11.98410 -11.93727 -11.66320 -11.40493 -11.32918 -11.21200 -11.11840 -10.94041 -10.85126 -10.64622 -10.49882 -10.06605 -9.45443 -9.41784 -9.30801 -8.89187 -8.71548 -8.26722 -8.01711 -6.32242 -4.40167 0.61438 0.66725 3.00571 3.03969 3.17897 3.25384 3.28444 3.49108 3.56111 4.09332 4.23060 4.23707 4.32535 4.50316 4.76716 4.88145 4.92598 4.98942 5.05185 5.32873 5.42848 5.49977 5.52786 5.57909 5.60551 5.65362 5.67782 5.75671 5.81572 5.84160 5.96165 5.97771 6.23309 6.26108 6.37674 6.40502 6.46711 6.62274 6.85247 6.92782 7.25361 7.30067 7.69622 7.98092 8.11225 8.59909 8.63926 9.26589 9.35336 10.75129 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.002298 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.396325 B =12180.097229 C =12570.466624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 H 0.093 0.907 4 C -0.128 4.128 5 C 0.523 3.477 6 O -0.552 6.552 7 N -0.607 5.607 8 C 0.098 3.902 9 C -0.136 4.136 10 C 0.248 3.752 11 O -0.582 6.582 12 C -0.535 4.535 13 H 0.064 0.936 14 C 0.073 3.927 15 N -0.896 5.896 16 Si 0.902 3.098 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.120 3.880 21 C -0.114 4.114 22 C -0.057 4.057 23 C -0.160 4.160 24 C 0.121 3.879 25 F -0.134 7.134 26 C -0.191 4.191 27 C 0.133 3.867 28 F -0.127 7.127 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.380 0.620 39 H 0.268 0.732 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -2.657 -19.785 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.056 4.056 3 H 0.112 0.888 4 C -0.168 4.168 5 C 0.312 3.688 6 O -0.431 6.431 7 N -0.339 5.339 8 C -0.025 4.025 9 C -0.175 4.175 10 C 0.207 3.793 11 O -0.391 6.391 12 C -0.573 4.573 13 H 0.083 0.917 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.730 3.270 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.002 4.002 21 C -0.116 4.116 22 C -0.075 4.075 23 C -0.179 4.179 24 C 0.102 3.898 25 F -0.112 7.112 26 C -0.211 4.211 27 C 0.113 3.887 28 F -0.105 7.105 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.230 0.770 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.843 -1.765 -20.277 20.437 hybrid contribution 0.783 -0.231 1.124 1.389 sum 2.627 -1.996 -19.154 19.436 Atomic orbital electron populations 1.21968 0.92962 1.01927 1.03647 1.19847 0.97326 0.99619 0.88788 0.88826 1.21697 1.02750 1.00168 0.92171 1.20046 0.79667 0.85592 0.83514 1.90636 1.41212 1.25162 1.86135 1.48640 1.54184 1.25106 1.05951 1.22201 0.94110 0.86339 0.99838 1.23178 1.01441 1.03339 0.89558 1.19642 0.81375 0.86673 0.91566 1.86136 1.37894 1.44519 1.70525 1.21444 1.49226 0.93807 0.92853 0.91739 1.24983 0.93717 0.94823 0.99454 1.69711 1.49639 1.01620 1.32497 0.86422 0.78419 0.78895 0.83289 1.20394 1.21066 1.19711 1.22415 1.00567 0.95996 0.81205 1.20123 0.98920 0.95125 0.97392 1.20823 0.97509 0.92855 0.96296 1.21219 1.00107 1.01626 0.94935 1.17291 0.97385 0.90311 0.84836 1.91528 1.87389 1.81525 1.50805 1.21007 1.05794 0.94637 0.99630 1.17161 0.97559 0.79220 0.94716 1.91538 1.90857 1.33532 1.94585 0.92934 0.89516 0.92840 0.88853 0.89119 0.92378 0.92881 0.89527 0.91362 0.76991 0.92231 0.91067 0.91133 0.83701 0.83942 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.75 37.16 0.33 -1.45 16 2 C -0.04 -0.44 2.19 -91.77 -0.20 -0.64 16 3 H 0.09 1.28 6.94 -51.93 -0.36 0.92 16 4 C -0.13 -1.61 4.11 -27.88 -0.11 -1.72 16 5 C 0.52 9.14 7.57 -10.99 -0.08 9.05 16 6 O -0.55 -11.19 14.22 5.55 0.08 -11.11 16 7 N -0.61 -11.39 3.32 -170.37 -0.57 -11.96 16 8 C 0.10 1.66 6.48 -3.06 -0.02 1.64 16 9 C -0.14 -2.80 5.37 -24.90 -0.13 -2.94 16 10 C 0.25 5.77 0.87 -89.50 -0.08 5.70 16 11 O -0.58 -14.30 13.17 -35.23 -0.46 -14.76 16 12 C -0.53 -13.60 8.27 -34.44 -0.28 -13.88 16 13 H 0.06 1.65 7.79 -52.49 -0.41 1.24 16 14 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 15 N -0.90 -22.41 10.76 55.43 0.60 -21.81 16 16 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 C 0.12 2.60 6.10 -2.41 -0.01 2.58 16 21 C -0.11 -1.16 4.79 -104.54 -0.50 -1.66 16 22 C -0.06 -0.47 8.76 -39.60 -0.35 -0.81 16 23 C -0.16 -1.24 10.02 -39.51 -0.40 -1.64 16 24 C 0.12 1.08 7.30 -39.43 -0.29 0.79 16 25 F -0.13 -1.26 17.27 2.25 0.04 -1.22 16 26 C -0.19 -1.74 10.01 -39.45 -0.39 -2.13 16 27 C 0.13 1.39 7.24 -39.43 -0.29 1.10 16 28 F -0.13 -1.49 16.19 2.25 0.04 -1.46 16 29 H 0.05 0.54 7.39 -51.93 -0.38 0.15 16 30 H 0.09 1.30 5.95 -51.93 -0.31 0.99 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.01 7.57 -51.93 -0.39 0.62 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.86 7.55 -51.93 -0.39 1.47 16 37 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 38 H 0.38 9.31 7.56 45.56 0.34 9.65 16 39 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 40 H 0.07 1.51 8.03 -51.93 -0.42 1.10 16 41 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 42 H 0.15 0.96 7.16 -52.49 -0.38 0.59 16 43 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 44 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -27.79 367.91 -7.87 -35.66 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.20 Total: 10.59 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -2.91 Total: -4.28 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.03 Total: -33.76 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.39 Total: -25.88 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.08 Total: -2.67 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.79 -7.87 -35.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.720 kcal (2) G-P(sol) polarization free energy of solvation -27.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds