Wall clock time and date at job start Sat Apr 11 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47450 * 2 1 4 4 C 1.53005 * 109.47381 * 120.00174 * 2 1 3 5 5 C 1.50697 * 109.47173 * 295.00226 * 4 2 1 6 6 O 1.21292 * 119.99820 * 359.97438 * 5 4 2 7 7 N 1.34767 * 120.00429 * 179.97438 * 5 4 2 8 8 C 1.47028 * 125.64560 * 0.02562 * 7 5 4 9 9 C 1.54327 * 107.27008 * 181.02200 * 8 7 5 10 10 C 1.55151 * 102.94096 * 22.19749 * 9 8 7 11 11 O 1.42898 * 111.00893 * 82.60699 * 10 9 8 12 12 C 1.50702 * 111.00254 * 206.41887 * 10 9 8 13 13 H 1.08000 * 119.99978 * 118.54693 * 12 10 9 14 14 C 1.37870 * 120.00197 * 298.54738 * 12 10 9 15 15 N 1.31518 * 120.00172 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 120.00299 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47135 * 89.99670 * 16 14 12 18 18 H 1.48497 * 109.47285 * 210.00246 * 16 14 12 19 19 H 1.48502 * 109.46807 * 330.00063 * 16 14 12 20 20 C 1.47425 * 125.65327 * 179.71524 * 7 5 4 21 21 C 1.50703 * 109.47119 * 240.00081 * 2 1 3 22 22 C 1.38228 * 119.98815 * 299.97669 * 21 2 1 23 23 C 1.38185 * 120.04921 * 180.02562 * 22 21 2 24 24 C 1.38492 * 120.02825 * 0.02562 * 23 22 21 25 25 F 1.35098 * 120.01655 * 179.97438 * 24 23 22 26 26 C 1.38399 * 119.97296 * 359.97438 * 24 23 22 27 27 C 1.38440 * 119.95071 * 359.97438 * 26 24 23 28 28 F 1.35101 * 120.01291 * 180.27612 * 27 26 24 29 29 H 1.08996 * 109.46796 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46647 * 299.99588 * 1 2 3 31 31 H 1.08999 * 109.46775 * 59.99585 * 1 2 3 32 32 H 1.09000 * 109.47053 * 54.99750 * 4 2 1 33 33 H 1.09000 * 109.47322 * 175.00095 * 4 2 1 34 34 H 1.08995 * 109.88300 * 300.44483 * 8 7 5 35 35 H 1.09006 * 109.88172 * 61.60968 * 8 7 5 36 36 H 1.09004 * 110.71764 * 140.55870 * 9 8 7 37 37 H 1.08997 * 110.72327 * 263.65384 * 9 8 7 38 38 H 0.96707 * 114.00056 * 61.44721 * 11 10 9 39 39 H 0.97002 * 120.00418 * 180.02562 * 15 14 12 40 40 H 1.09000 * 110.36332 * 274.74609 * 20 7 5 41 41 H 1.09001 * 110.36244 * 37.06474 * 20 7 5 42 42 H 1.08000 * 119.97482 * 0.02562 * 22 21 2 43 43 H 1.08003 * 119.98465 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.02520 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 8 1.0117 1.0873 2.3633 7 7 1.9845 -0.3920 3.7001 8 6 2.7438 -1.6194 3.9807 9 6 2.8738 -1.7373 5.5139 10 6 1.6952 -0.8705 6.0303 11 8 0.4733 -1.6113 6.0241 12 6 1.9867 -0.3265 7.4051 13 1 2.0371 0.7406 7.5642 14 6 2.1890 -1.1909 8.4600 15 7 2.1272 -2.4903 8.2665 16 14 2.5510 -0.5166 10.1640 17 1 1.2758 -0.3146 10.8976 18 1 3.4023 -1.4800 10.9071 19 1 3.2627 0.7810 10.0419 20 6 1.6663 0.2696 4.9786 21 6 2.0323 -0.7104 -1.2305 22 6 1.6987 -2.0339 -1.4488 23 6 2.1590 -2.6867 -2.5764 24 6 2.9558 -2.0156 -3.4889 25 9 3.4062 -2.6542 -4.5910 26 6 3.2905 -0.6904 -3.2714 27 6 2.8279 -0.0371 -2.1419 28 9 3.1493 1.2581 -1.9312 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 3.1264 -0.7995 1.2056 34 1 2.2098 -2.4839 3.5863 35 1 3.7335 -1.5545 3.5286 36 1 2.7588 -2.7735 5.8321 37 1 3.8289 -1.3353 5.8520 38 1 0.4833 -2.3913 6.5957 39 1 2.2691 -3.0985 9.0087 40 1 2.4175 1.0240 5.2126 41 1 0.6749 0.7207 4.9358 42 1 1.0777 -2.5582 -0.7375 43 1 1.8980 -3.7209 -2.7457 44 1 3.9115 -0.1661 -3.9827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:58 Heat of formation + Delta-G solvation = -175.053828 kcal Electronic energy + Delta-G solvation = -29327.423362 eV Core-core repulsion = 24879.542406 eV Total energy + Delta-G solvation = -4447.880956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -50.05488 -49.99263 -41.23930 -40.12606 -38.97017 -36.14842 -35.86334 -34.20026 -31.83506 -31.73786 -30.57241 -29.95803 -28.76453 -26.74067 -24.92939 -24.09694 -23.65217 -21.84806 -21.29240 -20.02305 -19.29485 -19.06504 -18.44543 -17.98421 -17.05566 -16.99793 -16.86409 -16.73803 -16.51109 -16.42260 -16.30519 -15.80473 -15.56493 -15.40489 -15.00695 -14.84033 -14.47523 -14.21192 -14.01587 -13.75118 -13.66414 -13.52447 -13.22414 -13.06271 -12.97613 -12.90119 -12.65548 -12.60213 -12.44935 -12.25276 -12.13920 -12.08199 -11.82920 -11.74238 -11.24378 -10.78210 -10.60640 -10.13089 -10.06068 -9.61962 -9.51727 -8.23150 -6.37377 -0.08383 0.01577 1.41962 1.45627 1.53517 1.68696 2.08284 2.36268 2.41449 2.85770 3.01854 3.35650 3.42993 3.55437 3.74168 3.83695 3.93549 3.98494 4.04393 4.10919 4.20440 4.37255 4.40503 4.44465 4.62120 4.65897 4.67324 4.75113 4.83814 4.87476 4.92633 4.93494 5.01703 5.07593 5.10889 5.20490 5.31348 5.36815 5.44612 5.47767 5.57348 5.76935 5.79097 6.10840 6.64606 6.70618 7.22007 7.32978 7.42040 8.82432 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023897 B = 0.002298 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.396325 B =12180.097229 C =12570.466624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 H 0.068 0.932 4 C -0.117 4.117 5 C 0.517 3.483 6 O -0.587 6.587 7 N -0.612 5.612 8 C 0.105 3.895 9 C -0.128 4.128 10 C 0.234 3.766 11 O -0.591 6.591 12 C -0.562 4.562 13 H 0.051 0.949 14 C 0.039 3.961 15 N -0.904 5.904 16 Si 0.956 3.044 17 H -0.280 1.280 18 H -0.277 1.277 19 H -0.274 1.274 20 C 0.125 3.875 21 C -0.118 4.118 22 C -0.051 4.051 23 C -0.148 4.148 24 C 0.115 3.885 25 F -0.137 7.137 26 C -0.192 4.192 27 C 0.114 3.886 28 F -0.142 7.142 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.378 0.622 39 H 0.271 0.729 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.168 0.832 43 H 0.169 0.831 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 -4.776 -21.105 21.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.050 4.050 3 H 0.086 0.914 4 C -0.156 4.156 5 C 0.308 3.692 6 O -0.469 6.469 7 N -0.344 5.344 8 C -0.017 4.017 9 C -0.166 4.166 10 C 0.194 3.806 11 O -0.400 6.400 12 C -0.600 4.600 13 H 0.069 0.931 14 C -0.163 4.163 15 N -0.543 5.543 16 Si 0.782 3.218 17 H -0.206 1.206 18 H -0.202 1.202 19 H -0.199 1.199 20 C 0.002 3.998 21 C -0.119 4.119 22 C -0.069 4.069 23 C -0.167 4.167 24 C 0.095 3.905 25 F -0.116 7.116 26 C -0.211 4.211 27 C 0.095 3.905 28 F -0.120 7.120 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.186 0.814 43 H 0.186 0.814 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.564 -3.899 -21.618 22.116 hybrid contribution 0.523 0.446 1.512 1.661 sum 3.087 -3.452 -20.107 20.633 Atomic orbital electron populations 1.21909 0.93181 1.02918 1.02186 1.19681 0.97114 0.98584 0.89632 0.91388 1.21741 1.04094 1.00446 0.89342 1.20995 0.78604 0.85445 0.84184 1.90630 1.42639 1.26974 1.86608 1.48726 1.54768 1.25577 1.05361 1.22239 0.96021 0.86183 0.97237 1.22952 0.99550 1.01811 0.92309 1.19786 0.81902 0.87583 0.91286 1.86123 1.38966 1.44500 1.70375 1.21671 1.50288 0.93455 0.94628 0.93055 1.25555 0.93512 0.95184 1.02062 1.69764 1.49296 1.01996 1.33239 0.85590 0.78040 0.78350 0.79805 1.20627 1.20223 1.19859 1.22130 0.99083 0.95682 0.82922 1.19964 0.99516 0.95894 0.96563 1.21044 0.97182 0.91868 0.96779 1.21496 0.98625 1.02643 0.93910 1.17450 0.97710 0.90267 0.85038 1.91524 1.87500 1.81507 1.51071 1.21103 1.05684 0.94966 0.99347 1.17354 0.98649 0.78892 0.95645 1.91501 1.91149 1.34613 1.94762 0.90665 0.92931 0.92310 0.85997 0.87138 0.90178 0.89426 0.90519 0.92226 0.77314 0.91973 0.91438 0.93706 0.81434 0.81359 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.75 71.98 0.63 -2.68 16 2 C -0.03 -0.70 2.19 -11.54 -0.03 -0.72 16 3 H 0.07 1.88 6.94 -2.39 -0.02 1.86 16 4 C -0.12 -2.62 4.11 29.85 0.12 -2.50 16 5 C 0.52 17.60 7.57 87.66 0.66 18.26 16 6 O -0.59 -24.32 14.22 -3.07 -0.04 -24.36 16 7 N -0.61 -22.40 3.32 -811.32 -2.70 -25.10 16 8 C 0.11 3.29 6.48 86.73 0.56 3.85 16 9 C -0.13 -5.13 5.37 31.78 0.17 -4.96 16 10 C 0.23 11.05 0.87 -10.07 -0.01 11.04 16 11 O -0.59 -29.36 13.17 -148.98 -1.96 -31.32 16 12 C -0.56 -29.11 8.27 25.60 0.21 -28.89 16 13 H 0.05 2.71 7.79 -2.91 -0.02 2.68 16 14 C 0.04 1.93 5.29 84.65 0.45 2.38 16 15 N -0.90 -44.97 10.76 21.45 0.23 -44.74 16 16 Si 0.96 40.62 29.54 68.60 2.03 42.65 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 C 0.12 5.54 6.10 86.93 0.53 6.07 16 21 C -0.12 -2.11 4.79 -19.81 -0.09 -2.21 16 22 C -0.05 -0.64 8.76 22.25 0.19 -0.44 16 23 C -0.15 -1.71 10.02 22.32 0.22 -1.49 16 24 C 0.11 1.72 7.30 22.37 0.16 1.89 16 25 F -0.14 -2.24 17.27 44.97 0.78 -1.47 16 26 C -0.19 -3.15 10.01 22.36 0.22 -2.92 16 27 C 0.11 2.23 7.24 22.37 0.16 2.39 16 28 F -0.14 -3.33 16.19 44.97 0.73 -2.60 16 29 H 0.07 1.33 7.39 -2.39 -0.02 1.32 16 30 H 0.05 1.58 5.95 -2.39 -0.01 1.57 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.12 2.08 7.57 -2.39 -0.02 2.07 16 33 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.08 3.22 7.55 -2.38 -0.02 3.20 16 37 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 38 H 0.38 18.67 7.56 -74.05 -0.56 18.11 16 39 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 40 H 0.07 2.97 8.03 -2.39 -0.02 2.96 16 41 H 0.04 2.17 8.03 -2.39 -0.02 2.15 16 42 H 0.17 1.34 7.16 -2.91 -0.02 1.32 16 43 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -61.79 367.91 3.71 -58.07 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.48 Total: 29.81 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 4.18 Total: -0.93 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -2.47 Total: -69.84 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -2.01 Total: -55.68 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 1.50 Total: -4.07 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -61.79 3.71 -58.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.983 kcal (2) G-P(sol) polarization free energy of solvation -61.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds