Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47029 * 2 1 4 4 C 1.50699 * 109.46963 * 240.00237 * 2 1 3 5 5 H 1.08004 * 120.00069 * 239.99640 * 4 2 1 6 6 C 1.37879 * 120.00438 * 59.99831 * 4 2 1 7 7 N 1.31522 * 119.99764 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00256 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46903 * 90.00597 * 8 6 4 10 10 H 1.48502 * 109.47020 * 210.00080 * 8 6 4 11 11 H 1.48495 * 109.47015 * 330.00366 * 8 6 4 12 12 N 1.46502 * 109.47190 * 120.00130 * 2 1 3 13 13 C 1.46502 * 119.99709 * 59.99955 * 12 2 1 14 14 S 1.65594 * 119.99993 * 239.99660 * 12 2 1 15 15 O 1.42103 * 106.40278 * 203.53708 * 14 12 2 16 16 O 1.42101 * 106.40351 * 336.46579 * 14 12 2 17 17 N 1.65599 * 107.21461 * 90.00225 * 14 12 2 18 18 C 1.46499 * 120.00268 * 64.99884 * 17 14 12 19 19 C 1.53002 * 109.47390 * 164.46184 * 18 17 14 20 20 C 1.50703 * 115.54877 * 304.09057 * 19 18 17 21 21 C 1.38227 * 119.61811 * 314.26548 * 20 19 18 22 22 C 1.38630 * 119.16369 * 179.97438 * 21 20 19 23 23 C 1.38677 * 118.41944 * 359.97438 * 22 21 20 24 24 C 1.38187 * 119.15939 * 0.02562 * 23 22 21 25 25 N 1.31849 * 119.61759 * 133.99283 * 20 19 18 26 26 C 1.53001 * 117.50001 * 158.41776 * 19 18 17 27 27 C 1.52994 * 117.49919 * 89.75548 * 19 18 17 28 28 H 1.09004 * 109.47105 * 59.99893 * 1 2 3 29 29 H 1.08998 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47211 * 299.99931 * 1 2 3 31 31 H 0.96999 * 119.99936 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46888 * 89.99819 * 13 12 2 33 33 H 1.08993 * 109.46964 * 209.99795 * 13 12 2 34 34 H 1.08999 * 109.46986 * 329.99975 * 13 12 2 35 35 H 0.97002 * 119.99875 * 245.00198 * 17 14 12 36 36 H 1.08997 * 109.47371 * 284.46265 * 18 17 14 37 37 H 1.09000 * 109.47145 * 44.46563 * 18 17 14 38 38 H 1.08004 * 120.42131 * 359.95520 * 21 20 19 39 39 H 1.08000 * 120.79336 * 180.02562 * 22 21 20 40 40 H 1.07991 * 120.41912 * 180.02562 * 23 22 21 41 41 H 1.08001 * 119.61180 * 179.97438 * 24 23 22 42 42 H 1.08998 * 117.49833 * 0.02562 * 26 19 18 43 43 H 1.08993 * 117.49647 * 145.02261 * 26 19 18 44 44 H 1.08998 * 117.50256 * 214.98271 * 27 19 18 45 45 H 1.09000 * 117.50083 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.3447 -2.1614 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9608 0.8089 3.3997 18 6 1.1510 -0.0354 4.2816 19 6 0.6197 0.8044 5.4450 20 6 1.6653 1.5225 6.2589 21 6 2.8030 0.8468 6.6584 22 6 3.7589 1.5167 7.4063 23 6 3.5339 2.8474 7.7254 24 6 2.3724 3.4569 7.2908 25 7 1.4866 2.7895 6.5770 26 6 -0.6175 0.2877 6.1821 27 6 -0.7292 1.5009 5.2554 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.7095 1.1619 -3.4844 32 1 2.4157 -2.7377 0.9715 33 1 1.6238 -2.2853 2.5000 34 1 0.6904 -2.3002 0.9845 35 1 1.9055 1.7749 3.4681 36 1 0.3135 -0.4492 3.7201 37 1 1.7645 -0.8480 4.6706 38 1 2.9454 -0.1900 6.3916 39 1 4.6579 1.0145 7.7320 40 1 4.2573 3.4003 8.3061 41 1 2.1895 4.4928 7.5355 42 1 -1.0527 -0.6507 5.8385 43 1 -0.6754 0.4675 7.2556 44 1 -0.8607 2.4783 5.7195 45 1 -1.2384 1.3606 4.3019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619751174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = -10.620275 kcal Electronic energy + Delta-G solvation = -28318.421031 eV Core-core repulsion = 24463.803587 eV Total energy + Delta-G solvation = -3854.617444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60658 -37.93841 -36.63095 -36.15172 -35.20656 -34.02323 -32.56908 -32.51856 -31.15438 -29.08959 -26.53686 -25.57660 -25.11452 -24.03468 -23.60093 -22.38047 -20.80316 -20.08309 -18.72777 -17.49351 -17.11656 -16.80358 -16.40998 -16.27611 -15.98552 -15.34526 -15.08249 -14.72748 -14.50599 -14.20026 -13.76142 -13.49293 -13.41858 -13.29687 -13.06219 -12.79489 -12.59944 -12.04594 -11.88558 -11.73483 -11.58102 -11.48325 -11.34909 -11.30701 -11.21270 -10.96920 -10.78034 -10.68649 -10.51850 -10.39258 -10.27735 -10.01050 -9.99649 -9.57827 -9.31299 -9.20652 -8.99065 -8.44587 -7.96837 -6.05945 -4.12425 0.93250 1.13299 1.22406 3.29107 3.31726 3.36253 3.40739 3.59525 3.76895 4.02630 4.15902 4.41426 4.44811 4.49131 4.69543 4.83355 4.88559 4.94587 5.03688 5.07012 5.25454 5.28516 5.37069 5.49752 5.53557 5.59387 5.60124 5.79164 5.87486 5.99343 6.03923 6.07218 6.11290 6.12827 6.36532 6.54445 6.62725 6.78336 6.80131 7.03148 7.17949 7.50201 7.65004 7.80582 7.84794 8.05726 8.29093 8.89789 9.53283 10.99735 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.003285 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.120277 B = 8522.342910 C = 8903.379538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.780 3.220 15 O -0.997 6.997 16 O -0.974 6.974 17 N -1.130 6.130 18 C 0.165 3.835 19 C -0.100 4.100 20 C 0.172 3.828 21 C -0.157 4.157 22 C -0.074 4.074 23 C -0.180 4.180 24 C 0.099 3.901 25 N -0.480 5.480 26 C -0.152 4.152 27 C -0.146 4.146 28 H 0.092 0.908 29 H 0.033 0.967 30 H 0.011 0.989 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.155 0.845 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.297 0.333 20.791 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.788 3.212 15 O -0.980 6.980 16 O -0.958 6.958 17 N -0.888 5.888 18 C 0.038 3.962 19 C -0.102 4.102 20 C 0.034 3.966 21 C -0.177 4.177 22 C -0.100 4.100 23 C -0.200 4.200 24 C -0.058 4.058 25 N -0.188 5.188 26 C -0.190 4.190 27 C -0.183 4.183 28 H 0.111 0.889 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.246 0.754 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.172 0.828 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.138 0.727 20.355 20.479 hybrid contribution 0.758 -0.427 -0.558 1.034 sum -1.379 0.300 19.797 19.847 Atomic orbital electron populations 1.22113 0.98261 0.99644 1.00670 1.18726 0.91277 0.92993 0.80460 0.92378 1.21339 1.31560 1.12969 0.90064 0.91977 1.24912 0.95005 0.95002 0.99000 1.69863 1.36624 1.22641 1.23754 0.86496 0.79284 0.79272 0.82353 1.20671 1.21138 1.19851 1.57693 1.70019 1.19738 1.35822 1.21163 1.01778 0.82221 0.98625 1.01924 0.73659 0.73149 0.72424 1.93526 1.69147 1.60789 1.74586 1.93614 1.74353 1.55991 1.71870 1.56162 1.62406 1.17532 1.52739 1.20654 0.95132 0.91816 0.88582 1.20172 0.88268 1.03190 0.98599 1.20074 0.92987 0.89566 0.93947 1.21958 0.94688 1.02041 0.99017 1.21615 0.98623 0.94479 0.95328 1.22135 0.99391 0.95971 1.02511 1.22715 0.89954 0.99810 0.93329 1.67371 1.31549 1.08002 1.11897 1.23054 0.98003 0.99355 0.98629 1.23073 0.96301 0.97548 1.01390 0.88915 0.94802 0.96975 0.92720 0.93263 0.93443 0.90928 0.75368 0.90779 0.90242 0.84504 0.84746 0.84907 0.82791 0.87743 0.88640 0.87349 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.95 37.16 0.33 -2.96 16 2 C 0.27 6.54 2.62 -69.08 -0.18 6.36 16 3 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 4 C -0.52 -14.02 8.37 -34.44 -0.29 -14.31 16 5 H 0.06 1.67 7.65 -52.48 -0.40 1.27 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.99 -20.27 3.12 -115.85 -0.36 -20.64 16 13 C 0.11 1.88 9.53 59.85 0.57 2.45 16 14 S 2.78 54.64 6.09 -107.50 -0.66 53.99 16 15 O -1.00 -20.32 16.67 -57.17 -0.95 -21.27 16 16 O -0.97 -23.23 16.70 -57.17 -0.95 -24.19 16 17 N -1.13 -17.19 5.80 -10.61 -0.06 -17.25 16 18 C 0.17 2.03 5.74 -4.04 -0.02 2.01 16 19 C -0.10 -1.11 2.01 -155.66 -0.31 -1.42 16 20 C 0.17 2.08 5.83 -82.59 -0.48 1.60 16 21 C -0.16 -1.80 9.40 -39.44 -0.37 -2.17 16 22 C -0.07 -0.73 10.18 -39.27 -0.40 -1.13 16 23 C -0.18 -1.63 10.11 -39.44 -0.40 -2.03 16 24 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16 25 N -0.48 -5.85 9.36 -9.47 -0.09 -5.94 16 26 C -0.15 -1.35 9.96 -26.69 -0.27 -1.61 16 27 C -0.15 -1.50 9.71 -26.70 -0.26 -1.76 16 28 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 29 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.67 7.79 -51.93 -0.40 0.26 16 34 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 35 H 0.41 6.16 8.54 -34.47 -0.29 5.87 16 36 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.08 0.93 7.05 -51.93 -0.37 0.57 16 38 H 0.14 1.47 7.32 -52.48 -0.38 1.08 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.11 1.17 7.59 -51.93 -0.39 0.78 16 45 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 382.12 15.07 5.76 5.76 Total: -1.00 -33.31 382.12 -10.62 -43.93 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.54 Total: 6.19 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -2.37 Total: -12.56 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: 0.12 Total: -68.03 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -1.91 Total: -45.46 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 54.64 SS G_CDS: -0.66 Total: 53.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.31 -10.62 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.309 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds