Wall clock time and date at job start Sat Apr 11 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47029 * 2 1 4 4 C 1.50699 * 109.46963 * 240.00237 * 2 1 3 5 5 H 1.08004 * 120.00069 * 239.99640 * 4 2 1 6 6 C 1.37879 * 120.00438 * 59.99831 * 4 2 1 7 7 N 1.31522 * 119.99764 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00256 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46903 * 90.00597 * 8 6 4 10 10 H 1.48502 * 109.47020 * 210.00080 * 8 6 4 11 11 H 1.48495 * 109.47015 * 330.00366 * 8 6 4 12 12 N 1.46502 * 109.47190 * 120.00130 * 2 1 3 13 13 C 1.46502 * 119.99709 * 59.99955 * 12 2 1 14 14 S 1.65594 * 119.99993 * 239.99660 * 12 2 1 15 15 O 1.42103 * 106.40278 * 203.53708 * 14 12 2 16 16 O 1.42101 * 106.40351 * 336.46579 * 14 12 2 17 17 N 1.65599 * 107.21461 * 90.00225 * 14 12 2 18 18 C 1.46499 * 120.00268 * 64.99884 * 17 14 12 19 19 C 1.53002 * 109.47390 * 164.46184 * 18 17 14 20 20 C 1.50703 * 115.54877 * 304.09057 * 19 18 17 21 21 C 1.38227 * 119.61811 * 314.26548 * 20 19 18 22 22 C 1.38630 * 119.16369 * 179.97438 * 21 20 19 23 23 C 1.38677 * 118.41944 * 359.97438 * 22 21 20 24 24 C 1.38187 * 119.15939 * 0.02562 * 23 22 21 25 25 N 1.31849 * 119.61759 * 133.99283 * 20 19 18 26 26 C 1.53001 * 117.50001 * 158.41776 * 19 18 17 27 27 C 1.52994 * 117.49919 * 89.75548 * 19 18 17 28 28 H 1.09004 * 109.47105 * 59.99893 * 1 2 3 29 29 H 1.08998 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47211 * 299.99931 * 1 2 3 31 31 H 0.96999 * 119.99936 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46888 * 89.99819 * 13 12 2 33 33 H 1.08993 * 109.46964 * 209.99795 * 13 12 2 34 34 H 1.08999 * 109.46986 * 329.99975 * 13 12 2 35 35 H 0.97002 * 119.99875 * 245.00198 * 17 14 12 36 36 H 1.08997 * 109.47371 * 284.46265 * 18 17 14 37 37 H 1.09000 * 109.47145 * 44.46563 * 18 17 14 38 38 H 1.08004 * 120.42131 * 359.95520 * 21 20 19 39 39 H 1.08000 * 120.79336 * 180.02562 * 22 21 20 40 40 H 1.07991 * 120.41912 * 180.02562 * 23 22 21 41 41 H 1.08001 * 119.61180 * 179.97438 * 24 23 22 42 42 H 1.08998 * 117.49833 * 0.02562 * 26 19 18 43 43 H 1.08993 * 117.49647 * 145.02261 * 26 19 18 44 44 H 1.08998 * 117.50256 * 214.98271 * 27 19 18 45 45 H 1.09000 * 117.50083 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.3447 -2.1614 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9608 0.8089 3.3997 18 6 1.1510 -0.0354 4.2816 19 6 0.6197 0.8044 5.4450 20 6 1.6653 1.5225 6.2589 21 6 2.8030 0.8468 6.6584 22 6 3.7589 1.5167 7.4063 23 6 3.5339 2.8474 7.7254 24 6 2.3724 3.4569 7.2908 25 7 1.4866 2.7895 6.5770 26 6 -0.6175 0.2877 6.1821 27 6 -0.7292 1.5009 5.2554 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.7095 1.1619 -3.4844 32 1 2.4157 -2.7377 0.9715 33 1 1.6238 -2.2853 2.5000 34 1 0.6904 -2.3002 0.9845 35 1 1.9055 1.7749 3.4681 36 1 0.3135 -0.4492 3.7201 37 1 1.7645 -0.8480 4.6706 38 1 2.9454 -0.1900 6.3916 39 1 4.6579 1.0145 7.7320 40 1 4.2573 3.4003 8.3061 41 1 2.1895 4.4928 7.5355 42 1 -1.0527 -0.6507 5.8385 43 1 -0.6754 0.4675 7.2556 44 1 -0.8607 2.4783 5.7195 45 1 -1.2384 1.3606 4.3019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619751174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:16 Heat of formation + Delta-G solvation = -33.571005 kcal Electronic energy + Delta-G solvation = -28319.416250 eV Core-core repulsion = 24463.803587 eV Total energy + Delta-G solvation = -3855.612663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.38435 -38.78910 -38.29574 -37.87508 -36.89461 -35.15488 -34.51515 -33.29480 -31.90984 -30.90097 -27.56249 -27.26958 -26.93812 -24.83167 -24.37534 -23.12389 -22.59244 -20.95560 -20.22736 -18.83065 -18.56478 -18.38735 -17.83392 -17.22302 -17.07177 -16.84078 -16.29519 -15.92147 -15.55178 -15.31907 -15.10698 -14.86827 -14.62206 -14.50003 -14.20949 -14.02055 -13.74793 -13.54013 -13.39981 -13.18454 -13.14033 -13.05034 -12.97035 -12.77306 -12.57082 -12.30573 -12.28923 -12.20019 -12.14390 -11.89022 -11.52850 -11.24780 -11.12707 -10.78756 -10.55570 -10.48587 -10.27618 -9.77190 -9.65682 -8.11054 -6.24633 -0.33467 0.16999 0.36929 1.42106 1.44414 1.53794 2.02422 2.43404 2.58290 2.72887 2.96888 3.17151 3.27562 3.40922 3.66449 3.73622 3.99264 4.04436 4.09382 4.14352 4.23424 4.28240 4.46792 4.55358 4.67990 4.72168 4.81811 4.82987 4.85438 4.91804 5.01920 5.04840 5.07648 5.12138 5.18254 5.21971 5.25212 5.31603 5.35238 5.62686 5.70871 5.81056 5.89000 6.00342 6.18351 6.31775 6.83124 7.06876 7.44345 8.92986 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.003285 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.120277 B = 8522.342910 C = 8903.379538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.021 0.979 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.995 5.995 13 C 0.101 3.899 14 S 2.797 3.203 15 O -1.005 7.005 16 O -1.023 7.023 17 N -1.117 6.117 18 C 0.158 3.842 19 C -0.110 4.110 20 C 0.154 3.846 21 C -0.177 4.177 22 C -0.083 4.083 23 C -0.177 4.177 24 C 0.085 3.915 25 N -0.503 5.503 26 C -0.129 4.129 27 C -0.151 4.151 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.416 0.584 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.163 0.837 41 H 0.177 0.823 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.783 -0.679 22.225 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.039 0.961 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.837 5.837 13 C -0.045 4.045 14 S 2.806 3.194 15 O -0.988 6.988 16 O -1.007 7.007 17 N -0.878 5.878 18 C 0.032 3.968 19 C -0.113 4.113 20 C 0.017 3.983 21 C -0.197 4.197 22 C -0.109 4.109 23 C -0.197 4.197 24 C -0.071 4.071 25 N -0.212 5.212 26 C -0.167 4.167 27 C -0.188 4.188 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.156 0.844 39 H 0.173 0.827 40 H 0.180 0.820 41 H 0.194 0.806 42 H 0.143 0.857 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.628 -0.311 21.801 21.961 hybrid contribution 0.940 -0.071 -0.873 1.285 sum -1.688 -0.383 20.928 20.999 Atomic orbital electron populations 1.21897 0.96577 1.00365 1.00509 1.18389 0.92413 0.91150 0.81157 0.96140 1.21662 1.31638 1.13001 0.91522 0.92579 1.25642 0.95257 0.95707 1.01666 1.69983 1.37358 1.23616 1.24310 0.85603 0.78792 0.78441 0.79069 1.19328 1.21020 1.20035 1.57549 1.69958 1.21092 1.35116 1.21405 1.01846 0.80170 1.01055 1.01184 0.73627 0.72280 0.72308 1.93507 1.69725 1.61057 1.74528 1.93544 1.76020 1.57662 1.73451 1.55757 1.62301 1.17801 1.51964 1.20945 0.95327 0.91768 0.88725 1.20123 0.88585 1.03877 0.98703 1.20253 0.93595 0.89829 0.94611 1.22122 0.95222 1.02377 0.99945 1.21980 0.99038 0.95043 0.94819 1.22476 0.99455 0.95816 1.01940 1.23219 0.90112 1.00870 0.92923 1.67377 1.32649 1.08302 1.12892 1.23144 0.95591 0.99434 0.98576 1.23051 0.95951 0.97876 1.01952 0.91689 0.93517 0.94449 0.92674 0.94142 0.89855 0.90069 0.75047 0.89172 0.89514 0.84403 0.82666 0.81987 0.80604 0.85702 0.88279 0.88264 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.95 71.98 0.64 -5.26 16 2 C 0.27 13.44 2.62 44.25 0.12 13.55 16 3 H 0.02 1.17 6.91 -2.39 -0.02 1.15 16 4 C -0.54 -29.31 8.37 25.60 0.21 -29.10 16 5 H 0.06 3.04 7.65 -2.91 -0.02 3.01 16 6 C 0.02 0.94 5.30 84.65 0.45 1.38 16 7 N -0.91 -51.59 11.32 21.45 0.24 -51.35 16 8 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 N -1.00 -40.23 3.12 -520.44 -1.62 -41.86 16 13 C 0.10 3.30 9.53 127.77 1.22 4.52 16 14 S 2.80 109.58 6.09 -56.49 -0.34 109.24 16 15 O -1.00 -40.11 16.67 -128.00 -2.13 -42.24 16 16 O -1.02 -50.13 16.70 -128.00 -2.14 -52.27 16 17 N -1.12 -33.16 5.80 -187.49 -1.09 -34.25 16 18 C 0.16 3.59 5.74 86.38 0.50 4.08 16 19 C -0.11 -2.28 2.01 -52.93 -0.11 -2.39 16 20 C 0.15 3.59 5.83 42.55 0.25 3.84 16 21 C -0.18 -3.86 9.40 22.36 0.21 -3.65 16 22 C -0.08 -1.51 10.18 22.47 0.23 -1.28 16 23 C -0.18 -2.87 10.11 22.36 0.23 -2.64 16 24 C 0.09 1.61 11.18 84.67 0.95 2.56 16 25 N -0.50 -11.91 9.36 -183.88 -1.72 -13.63 16 26 C -0.13 -1.99 9.96 30.62 0.30 -1.69 16 27 C -0.15 -2.90 9.71 30.62 0.30 -2.60 16 28 H 0.06 3.26 6.07 -2.38 -0.01 3.24 16 29 H 0.05 1.89 6.66 -2.39 -0.02 1.87 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 2.11 7.79 -2.39 -0.02 2.09 16 34 H 0.08 2.51 6.43 -2.39 -0.02 2.50 16 35 H 0.42 12.36 8.54 -96.74 -0.83 11.53 16 36 H 0.09 1.77 8.10 -2.39 -0.02 1.75 16 37 H 0.09 1.85 7.05 -2.39 -0.02 1.83 16 38 H 0.14 2.83 7.32 -2.91 -0.02 2.81 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.16 1.56 8.06 -2.92 -0.02 1.54 16 41 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.10 2.09 7.59 -2.39 -0.02 2.07 16 45 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -72.57 382.12 -1.11 -73.68 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.18 Total: 25.83 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 5.49 Total: -18.67 kcal Atomic # 7 Polarization: -136.90 SS G_CDS: -4.19 Total: -141.08 kcal Atomic # 8 Polarization: -90.24 SS G_CDS: -4.27 Total: -94.51 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 109.58 SS G_CDS: -0.34 Total: 109.24 kcal Total: -72.57 -1.11 -73.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.105 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds