Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47645 * 2 1 4 4 C 1.50699 * 109.47057 * 120.00204 * 2 1 3 5 5 N 1.28021 * 120.00078 * 239.99458 * 4 2 1 6 6 N 1.40095 * 119.99908 * 180.02562 * 5 4 2 7 7 C 1.39601 * 120.00080 * 180.02562 * 6 5 4 8 8 C 1.38990 * 120.07693 * 5.12754 * 7 6 5 9 9 C 1.38070 * 119.91612 * 180.02562 * 8 7 6 10 10 C 1.38315 * 120.08211 * 0.02562 * 9 8 7 11 11 C 1.38272 * 120.16075 * 359.97438 * 10 9 8 12 12 C 1.38105 * 120.08213 * 359.97438 * 11 10 9 13 13 S 1.76200 * 120.04498 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.39934 * 359.38198 * 13 12 11 15 15 O 1.42098 * 106.40161 * 132.29954 * 13 12 11 16 16 N 1.65590 * 107.22087 * 245.84122 * 13 12 11 17 17 C 1.46502 * 120.00167 * 83.75349 * 16 13 12 18 18 C 1.46502 * 120.00383 * 263.74928 * 16 13 12 19 19 C 1.53004 * 109.47015 * 240.00132 * 2 1 3 20 20 C 1.50702 * 109.47106 * 65.00187 * 19 2 1 21 21 H 1.07999 * 119.99784 * 359.97438 * 20 19 2 22 22 C 1.37878 * 119.99873 * 180.02562 * 20 19 2 23 23 N 1.31513 * 120.00053 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99668 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47220 * 89.99838 * 24 22 20 26 26 H 1.48502 * 109.46725 * 209.99406 * 24 22 20 27 27 H 1.48497 * 109.47349 * 329.99323 * 24 22 20 28 28 H 1.08999 * 109.46984 * 59.99454 * 1 2 3 29 29 H 1.08989 * 109.47621 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46892 * 299.99933 * 1 2 3 31 31 H 1.08003 * 120.00159 * 59.99694 * 4 2 1 32 32 H 0.97003 * 120.00473 * 0.02562 * 6 5 4 33 33 H 1.07997 * 120.04042 * 0.02562 * 8 7 6 34 34 H 1.08005 * 119.95516 * 179.72603 * 9 8 7 35 35 H 1.08004 * 119.91736 * 179.97438 * 10 9 8 36 36 H 1.08000 * 119.95989 * 179.97438 * 11 10 9 37 37 H 1.09005 * 109.47519 * 90.05998 * 17 16 13 38 38 H 1.08999 * 109.47444 * 210.06349 * 17 16 13 39 39 H 1.09004 * 109.47236 * 330.06733 * 17 16 13 40 40 H 1.09004 * 109.46426 * 89.99960 * 18 16 13 41 41 H 1.08994 * 109.47661 * 209.99906 * 18 16 13 42 42 H 1.08995 * 109.47129 * 330.00791 * 18 16 13 43 43 H 1.08997 * 109.47093 * 185.00552 * 19 2 1 44 44 H 1.08998 * 109.46982 * 305.00367 * 19 2 1 45 45 H 0.96998 * 120.00051 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7684 -0.0884 2.0731 6 7 3.2358 -0.7490 3.2167 7 6 4.0380 -0.0705 4.1359 8 6 4.2865 1.2874 3.9746 9 6 5.0809 1.9551 4.8854 10 6 5.6295 1.2741 5.9570 11 6 5.3845 -0.0769 6.1206 12 6 4.5901 -0.7511 5.2142 13 16 4.2790 -2.4728 5.4233 14 8 4.9867 -2.8695 6.5899 15 8 2.8778 -2.6492 5.2667 16 7 4.9941 -3.2580 4.1529 17 6 6.4186 -3.5956 4.2086 18 6 4.2024 -3.6152 2.9731 19 6 2.0400 -0.7212 -1.2493 20 6 1.6413 0.0571 -2.4766 21 1 1.0800 0.9742 -2.3757 22 6 1.9924 -0.4022 -3.7284 23 7 2.6755 -1.5192 -3.8513 24 14 1.4988 0.5631 -5.2496 25 1 2.5649 1.5418 -5.5824 26 1 1.3111 -0.3707 -6.3889 27 1 0.2281 1.2853 -4.9870 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7714 -1.7444 1.4014 32 1 3.0020 -1.6779 3.3699 33 1 3.8588 1.8197 3.1379 34 1 5.2780 3.0093 4.7582 35 1 6.2509 1.7989 6.6677 36 1 5.8149 -0.6055 6.9583 37 1 6.5407 -4.5846 4.6505 38 1 6.8320 -3.5948 3.2000 39 1 6.9432 -2.8587 4.8169 40 1 4.2373 -2.7990 2.2515 41 1 4.6119 -4.5182 2.5204 42 1 3.1689 -3.7940 3.2697 43 1 3.1263 -0.7996 -1.2056 44 1 1.6053 -1.7197 -1.2952 45 1 2.9227 -1.8421 -4.7319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793182154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = -6.339094 kcal Electronic energy + Delta-G solvation = -27553.558897 eV Core-core repulsion = 23699.127099 eV Total energy + Delta-G solvation = -3854.431798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -39.65100 -37.81658 -37.22715 -36.46830 -36.07328 -35.15400 -32.87970 -31.68775 -31.23381 -28.65621 -28.14912 -27.01833 -24.99551 -24.36766 -23.52683 -22.60466 -21.21942 -19.52064 -19.17113 -18.32354 -17.69830 -17.25819 -17.06538 -16.37324 -16.09926 -15.17502 -14.94474 -14.71282 -14.56218 -14.44776 -14.16636 -14.06163 -13.40579 -13.38271 -13.20869 -12.93416 -12.81391 -12.64305 -12.58624 -12.25678 -12.14821 -11.98416 -11.81313 -11.77040 -11.64124 -11.24146 -10.99073 -10.96805 -10.79338 -10.51039 -10.19895 -10.00589 -9.82597 -9.54478 -9.38890 -9.29365 -9.17360 -8.43772 -7.68319 -6.08711 -4.10855 0.12780 0.77547 1.30172 2.47059 2.52523 2.68633 3.27619 3.34617 3.37072 3.40493 3.61855 4.03670 4.39277 4.43929 4.63957 4.76711 4.98224 5.00846 5.06105 5.14030 5.19414 5.28137 5.29658 5.40177 5.43809 5.47398 5.51244 5.64009 5.76500 5.85706 5.95598 6.03331 6.05822 6.14573 6.24489 6.35422 6.41437 6.59521 6.74340 6.87614 6.90633 7.08080 7.52590 7.62474 7.88967 8.23564 8.30330 8.94224 9.53405 11.02653 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.002829 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.606288 B = 9896.724954 C =10637.258859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.039 4.039 3 H 0.080 0.920 4 C 0.110 3.890 5 N -0.267 5.267 6 N -0.598 5.598 7 C 0.328 3.672 8 C -0.179 4.179 9 C -0.029 4.029 10 C -0.193 4.193 11 C 0.011 3.989 12 C -0.752 4.752 13 S 2.693 3.307 14 O -0.955 6.955 15 O -0.963 6.963 16 N -1.007 6.007 17 C 0.094 3.906 18 C 0.070 3.930 19 C 0.034 3.966 20 C -0.517 4.517 21 H 0.060 0.940 22 C 0.058 3.942 23 N -0.895 5.895 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.273 1.273 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.384 0.616 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.018 0.982 44 H 0.022 0.978 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.554 -0.755 18.210 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.061 4.061 3 H 0.098 0.902 4 C -0.104 4.104 5 N -0.069 5.069 6 N -0.318 5.318 7 C 0.221 3.779 8 C -0.201 4.201 9 C -0.049 4.049 10 C -0.213 4.213 11 C -0.009 4.009 12 C -0.847 4.847 13 S 2.785 3.215 14 O -0.945 6.945 15 O -0.952 6.952 16 N -0.846 5.846 17 C -0.051 4.051 18 C -0.076 4.076 19 C -0.005 4.005 20 C -0.555 4.555 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.534 5.534 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.198 1.198 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.120 0.880 32 H 0.228 0.772 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.592 -0.440 18.917 20.038 hybrid contribution -0.257 -0.181 -1.311 1.348 sum 6.336 -0.621 17.606 18.722 Atomic orbital electron populations 1.21686 0.94181 1.01650 1.01238 1.20404 0.95620 0.99990 0.90055 0.90193 1.26728 0.91430 0.98123 0.94091 1.74159 1.13119 1.24781 0.94889 1.46397 1.52052 1.12921 1.20404 1.16904 0.84888 0.91852 0.84296 1.20958 1.03914 0.92544 1.02691 1.21301 0.91833 0.99712 0.92019 1.21040 1.05142 0.94612 1.00551 1.20594 0.90783 0.94619 0.94856 1.30062 1.20536 1.25760 1.08294 1.01863 0.73304 0.73614 0.72730 1.93548 1.74246 1.81569 1.45181 1.93556 1.29819 1.86102 1.85767 1.57301 1.19428 1.73172 1.34711 1.21518 0.78798 1.01330 1.03433 1.21831 0.96157 1.02394 0.87176 1.19133 0.96455 0.95655 0.89223 1.21147 1.35268 1.08498 0.90595 0.92216 1.24995 0.95134 0.95034 0.99153 1.69951 1.38709 1.21101 1.23631 0.86590 0.78986 0.79779 0.82634 1.20688 1.21280 1.19782 0.90632 0.93005 0.94499 0.87992 0.77239 0.83813 0.85193 0.85426 0.84186 0.91912 0.90499 0.90969 0.92243 0.89247 0.89822 0.96340 0.95984 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.99 37.16 0.33 -1.83 16 2 C -0.04 -0.74 2.75 -91.77 -0.25 -0.99 16 3 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 4 C 0.11 1.84 9.66 -13.87 -0.13 1.71 16 5 N -0.27 -4.50 10.23 32.67 0.33 -4.16 16 6 N -0.60 -9.30 5.65 32.42 0.18 -9.11 16 7 C 0.33 4.85 6.67 -83.78 -0.56 4.29 16 8 C -0.18 -2.45 9.51 -39.36 -0.37 -2.82 16 9 C -0.03 -0.32 10.04 -39.61 -0.40 -0.72 16 10 C -0.19 -1.98 10.04 -39.54 -0.40 -2.37 16 11 C 0.01 0.13 9.54 -39.62 -0.38 -0.25 16 12 C -0.75 -10.00 5.93 -39.37 -0.23 -10.24 16 13 S 2.69 35.34 5.10 -107.50 -0.55 34.79 16 14 O -0.96 -13.55 16.27 -57.17 -0.93 -14.48 16 15 O -0.96 -14.83 14.77 -57.17 -0.84 -15.67 16 16 N -1.01 -11.01 3.58 -129.20 -0.46 -11.47 16 17 C 0.09 0.80 10.30 59.85 0.62 1.41 16 18 C 0.07 0.73 9.04 59.85 0.54 1.27 16 19 C 0.03 0.78 4.43 -27.88 -0.12 0.66 16 20 C -0.52 -13.40 8.41 -34.44 -0.29 -13.68 16 21 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 22 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 23 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 24 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.07 1.34 6.95 -51.93 -0.36 0.98 16 29 H 0.05 0.82 8.14 -51.94 -0.42 0.40 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 1.52 8.00 -52.48 -0.42 1.10 16 32 H 0.38 5.63 3.35 -182.60 -0.61 5.02 16 33 H 0.14 2.03 7.37 -52.49 -0.39 1.64 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 35 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.14 1.36 7.33 -52.49 -0.38 0.97 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 39 H 0.07 0.56 7.95 -51.93 -0.41 0.14 16 40 H 0.06 0.68 7.11 -51.93 -0.37 0.32 16 41 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 42 H 0.08 0.87 6.74 -51.93 -0.35 0.52 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -32.09 381.76 -9.57 -41.65 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.02 Total: 3.89 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -1.75 Total: -22.09 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.79 Total: -49.44 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.77 Total: -30.16 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 35.34 SS G_CDS: -0.55 Total: 34.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.09 -9.57 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793182154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.313 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds