Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47645 * 2 1 4 4 C 1.50699 * 109.47057 * 120.00204 * 2 1 3 5 5 N 1.28021 * 120.00078 * 239.99458 * 4 2 1 6 6 N 1.40095 * 119.99908 * 180.02562 * 5 4 2 7 7 C 1.39601 * 120.00080 * 180.02562 * 6 5 4 8 8 C 1.38990 * 120.07693 * 5.12754 * 7 6 5 9 9 C 1.38070 * 119.91612 * 180.02562 * 8 7 6 10 10 C 1.38315 * 120.08211 * 0.02562 * 9 8 7 11 11 C 1.38272 * 120.16075 * 359.97438 * 10 9 8 12 12 C 1.38105 * 120.08213 * 359.97438 * 11 10 9 13 13 S 1.76200 * 120.04498 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.39934 * 359.38198 * 13 12 11 15 15 O 1.42098 * 106.40161 * 132.29954 * 13 12 11 16 16 N 1.65590 * 107.22087 * 245.84122 * 13 12 11 17 17 C 1.46502 * 120.00167 * 83.75349 * 16 13 12 18 18 C 1.46502 * 120.00383 * 263.74928 * 16 13 12 19 19 C 1.53004 * 109.47015 * 240.00132 * 2 1 3 20 20 C 1.50702 * 109.47106 * 65.00187 * 19 2 1 21 21 H 1.07999 * 119.99784 * 359.97438 * 20 19 2 22 22 C 1.37878 * 119.99873 * 180.02562 * 20 19 2 23 23 N 1.31513 * 120.00053 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99668 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47220 * 89.99838 * 24 22 20 26 26 H 1.48502 * 109.46725 * 209.99406 * 24 22 20 27 27 H 1.48497 * 109.47349 * 329.99323 * 24 22 20 28 28 H 1.08999 * 109.46984 * 59.99454 * 1 2 3 29 29 H 1.08989 * 109.47621 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46892 * 299.99933 * 1 2 3 31 31 H 1.08003 * 120.00159 * 59.99694 * 4 2 1 32 32 H 0.97003 * 120.00473 * 0.02562 * 6 5 4 33 33 H 1.07997 * 120.04042 * 0.02562 * 8 7 6 34 34 H 1.08005 * 119.95516 * 179.72603 * 9 8 7 35 35 H 1.08004 * 119.91736 * 179.97438 * 10 9 8 36 36 H 1.08000 * 119.95989 * 179.97438 * 11 10 9 37 37 H 1.09005 * 109.47519 * 90.05998 * 17 16 13 38 38 H 1.08999 * 109.47444 * 210.06349 * 17 16 13 39 39 H 1.09004 * 109.47236 * 330.06733 * 17 16 13 40 40 H 1.09004 * 109.46426 * 89.99960 * 18 16 13 41 41 H 1.08994 * 109.47661 * 209.99906 * 18 16 13 42 42 H 1.08995 * 109.47129 * 330.00791 * 18 16 13 43 43 H 1.08997 * 109.47093 * 185.00552 * 19 2 1 44 44 H 1.08998 * 109.46982 * 305.00367 * 19 2 1 45 45 H 0.96998 * 120.00051 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7684 -0.0884 2.0731 6 7 3.2358 -0.7490 3.2167 7 6 4.0380 -0.0705 4.1359 8 6 4.2865 1.2874 3.9746 9 6 5.0809 1.9551 4.8854 10 6 5.6295 1.2741 5.9570 11 6 5.3845 -0.0769 6.1206 12 6 4.5901 -0.7511 5.2142 13 16 4.2790 -2.4728 5.4233 14 8 4.9867 -2.8695 6.5899 15 8 2.8778 -2.6492 5.2667 16 7 4.9941 -3.2580 4.1529 17 6 6.4186 -3.5956 4.2086 18 6 4.2024 -3.6152 2.9731 19 6 2.0400 -0.7212 -1.2493 20 6 1.6413 0.0571 -2.4766 21 1 1.0800 0.9742 -2.3757 22 6 1.9924 -0.4022 -3.7284 23 7 2.6755 -1.5192 -3.8513 24 14 1.4988 0.5631 -5.2496 25 1 2.5649 1.5418 -5.5824 26 1 1.3111 -0.3707 -6.3889 27 1 0.2281 1.2853 -4.9870 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7714 -1.7444 1.4014 32 1 3.0020 -1.6779 3.3699 33 1 3.8588 1.8197 3.1379 34 1 5.2780 3.0093 4.7582 35 1 6.2509 1.7989 6.6677 36 1 5.8149 -0.6055 6.9583 37 1 6.5407 -4.5846 4.6505 38 1 6.8320 -3.5948 3.2000 39 1 6.9432 -2.8587 4.8169 40 1 4.2373 -2.7990 2.2515 41 1 4.6119 -4.5182 2.5204 42 1 3.1689 -3.7940 3.2697 43 1 3.1263 -0.7996 -1.2056 44 1 1.6053 -1.7197 -1.2952 45 1 2.9227 -1.8421 -4.7319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793182154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = -26.474862 kcal Electronic energy + Delta-G solvation = -27554.432050 eV Core-core repulsion = 23699.127099 eV Total energy + Delta-G solvation = -3855.304951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65938 -38.93241 -38.45811 -37.36647 -37.14398 -36.57005 -34.55858 -33.10417 -32.22327 -29.65273 -29.13614 -28.70165 -25.93601 -25.81647 -24.57747 -23.91443 -22.49121 -20.85580 -20.22076 -19.37967 -18.88989 -18.46916 -18.08105 -18.01733 -17.22201 -16.50812 -16.03374 -15.86157 -15.61166 -15.41722 -15.25184 -15.18166 -14.83215 -14.74274 -14.40520 -14.26640 -13.76918 -13.70327 -13.59020 -13.48487 -13.29944 -13.26998 -12.87234 -12.84196 -12.76925 -12.68734 -12.53592 -12.47894 -12.22521 -11.95406 -11.76315 -11.45987 -11.29304 -10.98826 -10.77850 -10.49785 -10.43715 -10.23260 -8.78224 -8.14359 -6.22507 -0.85746 -0.19009 0.30865 1.20795 1.37974 1.45401 1.46495 1.56530 1.73779 2.41056 2.46268 2.66118 3.03739 3.20757 3.59408 3.66264 3.80996 3.87377 4.09105 4.23852 4.25829 4.33059 4.36879 4.38371 4.52115 4.57242 4.60693 4.68617 4.71893 4.82879 4.91210 4.93197 4.94692 5.12511 5.20435 5.23188 5.32689 5.35090 5.45847 5.47582 5.55059 5.64222 5.77125 5.88526 6.04990 6.28675 6.91786 7.00543 7.45666 8.97417 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.002829 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.606288 B = 9896.724954 C =10637.258859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.028 4.028 3 H 0.072 0.928 4 C 0.101 3.899 5 N -0.271 5.271 6 N -0.602 5.602 7 C 0.298 3.702 8 C -0.200 4.200 9 C -0.023 4.023 10 C -0.181 4.181 11 C 0.003 3.997 12 C -0.756 4.756 13 S 2.702 3.298 14 O -0.968 6.968 15 O -0.991 6.991 16 N -1.005 6.005 17 C 0.083 3.917 18 C 0.065 3.935 19 C 0.041 3.959 20 C -0.527 4.527 21 H 0.067 0.933 22 C 0.003 3.997 23 N -0.933 5.933 24 Si 0.957 3.043 25 H -0.278 1.278 26 H -0.287 1.287 27 H -0.261 1.261 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.387 0.613 33 H 0.132 0.868 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.113 0.887 42 H 0.081 0.919 43 H -0.012 1.012 44 H 0.007 0.993 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 0.408 19.411 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.049 4.049 3 H 0.090 0.910 4 C -0.114 4.114 5 N -0.073 5.073 6 N -0.324 5.324 7 C 0.192 3.808 8 C -0.223 4.223 9 C -0.042 4.042 10 C -0.202 4.202 11 C -0.017 4.017 12 C -0.851 4.851 13 S 2.795 3.205 14 O -0.958 6.958 15 O -0.981 6.981 16 N -0.845 5.845 17 C -0.062 4.062 18 C -0.080 4.080 19 C 0.003 3.997 20 C -0.565 4.565 21 H 0.085 0.915 22 C -0.195 4.195 23 N -0.573 5.573 24 Si 0.782 3.218 25 H -0.204 1.204 26 H -0.212 1.212 27 H -0.185 1.185 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.230 0.770 33 H 0.150 0.850 34 H 0.180 0.820 35 H 0.183 0.817 36 H 0.176 0.824 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.132 0.868 42 H 0.099 0.901 43 H 0.007 0.993 44 H 0.025 0.975 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.279 0.738 20.150 21.437 hybrid contribution -0.335 -0.504 -1.548 1.662 sum 6.944 0.234 18.602 19.857 Atomic orbital electron populations 1.21623 0.92537 1.02265 1.01770 1.20092 0.96931 0.98899 0.88962 0.90973 1.26463 0.92332 0.98739 0.93821 1.74001 1.12323 1.25677 0.95339 1.46334 1.52745 1.13121 1.20218 1.17193 0.85990 0.92589 0.84985 1.21084 1.05290 0.92412 1.03507 1.21699 0.90216 1.01203 0.91076 1.21508 1.04123 0.94099 1.00420 1.20992 0.90291 0.95518 0.94867 1.30116 1.20848 1.25796 1.08304 1.01428 0.72633 0.73640 0.72840 1.93523 1.74288 1.81848 1.46143 1.93513 1.31758 1.86535 1.86251 1.57183 1.20467 1.72739 1.34141 1.21803 0.77378 1.02312 1.04674 1.21923 0.96385 1.02913 0.86811 1.18957 0.94465 0.95226 0.91096 1.21587 1.34605 1.08720 0.91586 0.91513 1.25849 0.95274 0.95975 1.02399 1.70079 1.40192 1.22807 1.24259 0.85564 0.79037 0.78363 0.78794 1.20369 1.21244 1.18496 0.91762 0.92388 0.92185 0.86440 0.76955 0.84985 0.82036 0.81700 0.82368 0.90576 0.89159 0.90240 0.93603 0.86831 0.90072 0.99321 0.97513 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 8.99 71.98 0.65 -3.43 16 2 C -0.03 -1.05 2.75 -11.54 -0.03 -1.08 16 3 H 0.07 2.81 8.11 -2.39 -0.02 2.79 16 4 C 0.10 3.42 9.66 88.66 0.86 4.28 16 5 N -0.27 -9.28 10.23 -50.46 -0.52 -9.80 16 6 N -0.60 -19.01 5.65 -51.34 -0.29 -19.30 16 7 C 0.30 8.75 6.67 38.26 0.26 9.00 16 8 C -0.20 -5.37 9.51 22.41 0.21 -5.15 16 9 C -0.02 -0.44 10.04 22.25 0.22 -0.22 16 10 C -0.18 -3.11 10.04 22.30 0.22 -2.88 16 11 C 0.00 0.06 9.54 22.25 0.21 0.28 16 12 C -0.76 -19.50 5.93 22.41 0.13 -19.37 16 13 S 2.70 69.89 5.10 -56.49 -0.29 69.61 16 14 O -0.97 -26.57 16.27 -128.00 -2.08 -28.65 16 15 O -0.99 -30.87 14.77 -128.00 -1.89 -32.76 16 16 N -1.01 -21.40 3.58 -562.68 -2.02 -23.42 16 17 C 0.08 1.28 10.30 127.77 1.32 2.60 16 18 C 0.06 1.35 9.04 127.77 1.16 2.51 16 19 C 0.04 1.97 4.43 29.85 0.13 2.10 16 20 C -0.53 -27.66 8.41 25.60 0.22 -27.44 16 21 H 0.07 3.33 7.06 -2.91 -0.02 3.31 16 22 C 0.00 0.15 5.46 84.66 0.46 0.61 16 23 N -0.93 -54.15 13.29 21.45 0.28 -53.86 16 24 Si 0.96 42.39 29.54 68.60 2.03 44.42 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 28 H 0.06 2.25 6.95 -2.39 -0.02 2.23 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.12 3.56 8.00 -2.91 -0.02 3.54 16 32 H 0.39 11.59 3.35 -213.32 -0.71 10.88 16 33 H 0.13 3.77 7.37 -2.91 -0.02 3.74 16 34 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.16 2.65 7.33 -2.91 -0.02 2.63 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.09 1.16 8.07 -2.39 -0.02 1.14 16 39 H 0.08 1.11 7.95 -2.38 -0.02 1.09 16 40 H 0.05 1.08 7.11 -2.38 -0.02 1.07 16 41 H 0.11 1.76 8.07 -2.39 -0.02 1.74 16 42 H 0.08 1.72 6.74 -2.39 -0.02 1.70 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -69.81 381.76 1.52 -68.30 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.28 Total: 23.66 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 6.01 Total: -38.20 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -2.54 Total: -106.37 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -3.97 Total: -61.41 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 69.89 SS G_CDS: -0.29 Total: 69.61 kcal Total: -69.81 1.52 -68.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793182154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.822 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds