Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47227 * 2 1 4 4 N 1.46496 * 109.47532 * 120.00751 * 2 1 3 5 5 C 1.34776 * 119.99761 * 275.00023 * 4 2 1 6 6 O 1.21584 * 120.00085 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00183 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00165 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.47167 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99744 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99952 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99973 * 179.97438 * 11 9 8 13 13 H 1.07995 * 119.99503 * 0.02562 * 12 11 9 14 14 C 1.38948 * 119.99722 * 179.97438 * 12 11 9 15 15 N 1.31411 * 120.00319 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99724 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46715 * 60.00213 * 16 14 12 18 18 H 1.48497 * 109.47022 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47264 * 300.00581 * 16 14 12 20 20 C 1.53008 * 109.46633 * 240.00196 * 2 1 3 21 21 H 1.08999 * 109.46885 * 65.00555 * 20 2 1 22 22 O 1.42900 * 109.47272 * 305.00182 * 20 2 1 23 23 C 1.50702 * 109.46908 * 185.00081 * 20 2 1 24 24 C 1.38264 * 119.98681 * 85.02375 * 23 20 2 25 25 C 1.38229 * 120.04919 * 180.02562 * 24 23 20 26 26 C 1.38222 * 120.02563 * 359.97438 * 25 24 23 27 27 C 1.38435 * 119.97557 * 359.97438 * 26 25 24 28 28 F 1.35093 * 120.02480 * 180.02562 * 27 26 25 29 29 C 1.38175 * 119.98427 * 265.00100 * 23 20 2 30 30 H 1.08996 * 109.47715 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46562 * 299.99752 * 1 2 3 32 32 H 1.09005 * 109.47446 * 59.99396 * 1 2 3 33 33 H 0.97000 * 120.00245 * 94.99274 * 4 2 1 34 34 H 0.97000 * 119.99823 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47011 * 299.99156 * 8 7 5 36 36 H 1.08994 * 109.47645 * 59.99707 * 8 7 5 37 37 H 0.96998 * 119.99951 * 0.02562 * 11 9 8 38 38 H 0.97000 * 120.00083 * 179.97438 * 15 14 12 39 39 H 0.96695 * 113.99513 * 299.99896 * 22 20 2 40 40 H 1.08001 * 119.97634 * 359.97438 * 24 23 20 41 41 H 1.07995 * 119.98318 * 180.02562 * 25 24 23 42 42 H 1.07997 * 120.01105 * 180.02562 * 26 25 24 43 43 H 1.08001 * 120.01835 * 359.72954 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0185 2.3570 6 8 1.8584 1.1613 2.4117 7 7 2.5960 -0.6540 3.4575 8 6 2.7364 0.0769 4.7194 9 6 3.2518 -0.8556 5.7854 10 8 3.4788 -2.0165 5.5174 11 7 3.4603 -0.3994 7.0363 12 6 3.9286 -1.2479 8.0061 13 1 4.1307 -2.2815 7.7675 14 6 4.1440 -0.7774 9.2957 15 7 3.8985 0.4805 9.5858 16 14 4.7814 -1.9335 10.6173 17 1 6.1024 -2.4739 10.2071 18 1 4.9246 -1.1925 11.8961 19 1 3.8234 -3.0535 10.7992 20 6 2.0399 -0.7213 -1.2494 21 1 1.7515 -0.1582 -2.1370 22 8 1.4700 -2.0303 -1.3096 23 6 3.5418 -0.8295 -1.1891 24 6 4.1323 -1.8764 -0.5058 25 6 5.5098 -1.9766 -0.4492 26 6 6.2985 -1.0304 -1.0762 27 6 5.7083 0.0177 -1.7616 28 9 6.4781 0.9428 -2.3752 29 6 4.3281 0.1174 -1.8171 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 2.2490 -1.6319 1.1524 34 1 2.8260 -1.5953 3.4140 35 1 3.4383 0.9002 4.5863 36 1 1.7662 0.4717 5.0207 37 1 3.2783 0.5289 7.2506 38 1 4.0485 0.8088 10.4862 39 1 1.6856 -2.5884 -0.5500 40 1 3.5169 -2.6160 -0.0152 41 1 5.9699 -2.7950 0.0845 42 1 7.3747 -1.1091 -1.0322 43 1 3.8666 0.9325 -2.3547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807552249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = -137.503839 kcal Electronic energy + Delta-G solvation = -29017.874508 eV Core-core repulsion = 24591.541803 eV Total energy + Delta-G solvation = -4426.332705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -49.17249 -40.70124 -39.49935 -38.28687 -37.53411 -34.78280 -34.36592 -33.68950 -32.12829 -31.41175 -30.79422 -30.64738 -27.40068 -26.62306 -24.54072 -23.19974 -22.65653 -21.49584 -20.57441 -19.61392 -18.78341 -18.28015 -18.03646 -17.12671 -16.71203 -16.51201 -15.94347 -15.86836 -15.61400 -15.48199 -15.14373 -14.90830 -14.52611 -14.27419 -14.16757 -14.08310 -13.83402 -13.46998 -13.31136 -13.23440 -12.61529 -12.45740 -12.23067 -12.20054 -12.10395 -11.96055 -11.71081 -11.64634 -11.26209 -11.12035 -10.56657 -10.52617 -10.33759 -10.09149 -9.64500 -9.39460 -9.20990 -9.02107 -8.67975 -8.65020 -8.12028 -6.53119 -3.95407 0.76707 0.84633 2.67283 3.11988 3.17931 3.20182 3.23819 3.34360 3.73002 3.77231 3.90950 4.05876 4.14640 4.34412 4.37133 4.41166 4.64336 4.73361 4.87372 4.92323 5.02893 5.09760 5.15555 5.21796 5.43394 5.53372 5.63887 5.74144 5.76214 5.89365 5.92587 5.97809 6.02784 6.05710 6.09477 6.40114 6.51394 6.70440 6.96110 7.04118 7.43903 7.90150 8.15104 8.43024 8.73337 9.02581 9.37473 9.85159 10.63667 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.002464 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.545289 B =11360.099018 C =12363.775379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 H 0.099 0.901 4 N -0.744 5.744 5 C 0.708 3.292 6 O -0.594 6.594 7 N -0.723 5.723 8 C 0.129 3.871 9 C 0.428 3.572 10 O -0.599 6.599 11 N -0.548 5.548 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.141 3.859 21 H 0.125 0.875 22 O -0.544 6.544 23 C -0.085 4.085 24 C -0.120 4.120 25 C -0.081 4.081 26 C -0.153 4.153 27 C 0.102 3.898 28 F -0.139 7.139 29 C -0.144 4.144 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.389 0.611 34 H 0.406 0.594 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.373 0.627 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 -2.219 -22.585 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.117 0.883 4 N -0.402 5.402 5 C 0.408 3.592 6 O -0.472 6.472 7 N -0.380 5.380 8 C 0.000 4.000 9 C 0.214 3.786 10 O -0.486 6.486 11 N -0.183 5.183 12 C -0.436 4.436 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.760 3.240 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C 0.082 3.918 21 H 0.143 0.857 22 O -0.350 6.350 23 C -0.085 4.085 24 C -0.139 4.139 25 C -0.099 4.099 26 C -0.172 4.172 27 C 0.083 3.917 28 F -0.118 7.118 29 C -0.163 4.163 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.223 0.777 34 H 0.243 0.757 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.221 0.779 40 H 0.142 0.858 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.844 -1.509 -23.057 23.180 hybrid contribution 0.943 -0.744 1.338 1.798 sum -0.901 -2.253 -21.719 21.854 Atomic orbital electron populations 1.22107 0.94123 1.02843 1.02679 1.21461 0.94933 0.97930 0.82751 0.88264 1.45081 1.72737 1.13292 1.09079 1.15790 0.78347 0.84964 0.80125 1.90909 1.57452 1.14270 1.84610 1.44752 1.70155 1.14796 1.08314 1.20784 1.02103 0.94296 0.82792 1.19748 0.85906 0.88863 0.84085 1.90483 1.58460 1.18449 1.81178 1.41782 1.56133 1.13011 1.07371 1.19674 1.40578 0.94854 0.88449 0.87739 1.25324 0.97235 0.96590 0.98512 1.69605 1.47694 1.14083 1.22058 0.85876 0.79454 0.79530 0.79126 1.19772 1.20841 1.19774 1.21244 0.86938 0.84919 0.98739 0.85713 1.86671 1.75421 1.24380 1.48528 1.20283 0.96396 0.94933 0.96897 1.20872 0.95138 0.98234 0.99622 1.21025 0.93308 0.98249 0.97299 1.21213 1.01345 0.94908 0.99711 1.17668 0.88762 0.88708 0.96535 1.91510 1.75156 1.64308 1.80811 1.20900 0.91788 1.00919 1.02693 0.91732 0.91535 0.91656 0.77689 0.75720 0.90067 0.90018 0.77014 0.91507 0.77903 0.85789 0.84526 0.84601 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.29 37.16 0.35 -1.09 16 2 C 0.14 1.25 2.47 -67.93 -0.17 1.08 16 3 H 0.10 1.09 7.58 -51.93 -0.39 0.70 16 4 N -0.74 -7.79 4.27 -58.68 -0.25 -8.04 16 5 C 0.71 10.72 8.53 -86.92 -0.74 9.98 16 6 O -0.59 -11.05 16.00 5.29 0.08 -10.96 16 7 N -0.72 -11.51 5.53 -66.41 -0.37 -11.88 16 8 C 0.13 2.34 6.15 -5.19 -0.03 2.30 16 9 C 0.43 9.61 7.85 -10.98 -0.09 9.52 16 10 O -0.60 -14.86 15.24 5.55 0.08 -14.78 16 11 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16 12 C -0.31 -8.21 9.68 -14.93 -0.14 -8.36 16 13 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 15 N -0.89 -23.70 13.05 55.50 0.72 -22.98 16 16 Si 0.93 20.31 29.55 -169.99 -5.02 15.29 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 C 0.14 1.03 3.12 -27.88 -0.09 0.94 16 21 H 0.13 0.75 8.05 -51.93 -0.42 0.34 16 22 O -0.54 -3.94 12.26 -35.23 -0.43 -4.37 16 23 C -0.08 -0.70 4.77 -104.63 -0.50 -1.20 16 24 C -0.12 -0.95 8.17 -39.57 -0.32 -1.27 16 25 C -0.08 -0.67 10.04 -39.59 -0.40 -1.07 16 26 C -0.15 -1.40 10.03 -39.51 -0.40 -1.80 16 27 C 0.10 1.04 7.30 -39.42 -0.29 0.75 16 28 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 29 C -0.14 -1.30 9.66 -39.51 -0.38 -1.68 16 30 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.39 3.12 5.64 -40.82 -0.23 2.88 16 34 H 0.41 6.20 7.45 -40.82 -0.30 5.89 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.37 1.82 6.25 45.56 0.28 2.11 16 40 H 0.12 0.68 5.63 -52.49 -0.30 0.38 16 41 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -32.87 370.62 -7.45 -40.33 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -4.54 Total: 18.07 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -3.30 Total: 8.70 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.05 Total: -56.37 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.26 Total: -30.11 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.87 -7.45 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807552249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.178 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds