Wall clock time and date at job start Sat Apr 11 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47227 * 2 1 4 4 N 1.46496 * 109.47532 * 120.00751 * 2 1 3 5 5 C 1.34776 * 119.99761 * 275.00023 * 4 2 1 6 6 O 1.21584 * 120.00085 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00183 * 179.97438 * 5 4 2 8 8 C 1.46503 * 120.00165 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.47167 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99744 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99952 * 179.97438 * 9 8 7 12 12 C 1.37105 * 119.99973 * 179.97438 * 11 9 8 13 13 H 1.07995 * 119.99503 * 0.02562 * 12 11 9 14 14 C 1.38948 * 119.99722 * 179.97438 * 12 11 9 15 15 N 1.31411 * 120.00319 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99724 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46715 * 60.00213 * 16 14 12 18 18 H 1.48497 * 109.47022 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47264 * 300.00581 * 16 14 12 20 20 C 1.53008 * 109.46633 * 240.00196 * 2 1 3 21 21 H 1.08999 * 109.46885 * 65.00555 * 20 2 1 22 22 O 1.42900 * 109.47272 * 305.00182 * 20 2 1 23 23 C 1.50702 * 109.46908 * 185.00081 * 20 2 1 24 24 C 1.38264 * 119.98681 * 85.02375 * 23 20 2 25 25 C 1.38229 * 120.04919 * 180.02562 * 24 23 20 26 26 C 1.38222 * 120.02563 * 359.97438 * 25 24 23 27 27 C 1.38435 * 119.97557 * 359.97438 * 26 25 24 28 28 F 1.35093 * 120.02480 * 180.02562 * 27 26 25 29 29 C 1.38175 * 119.98427 * 265.00100 * 23 20 2 30 30 H 1.08996 * 109.47715 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46562 * 299.99752 * 1 2 3 32 32 H 1.09005 * 109.47446 * 59.99396 * 1 2 3 33 33 H 0.97000 * 120.00245 * 94.99274 * 4 2 1 34 34 H 0.97000 * 119.99823 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47011 * 299.99156 * 8 7 5 36 36 H 1.08994 * 109.47645 * 59.99707 * 8 7 5 37 37 H 0.96998 * 119.99951 * 0.02562 * 11 9 8 38 38 H 0.97000 * 120.00083 * 179.97438 * 15 14 12 39 39 H 0.96695 * 113.99513 * 299.99896 * 22 20 2 40 40 H 1.08001 * 119.97634 * 359.97438 * 24 23 20 41 41 H 1.07995 * 119.98318 * 180.02562 * 25 24 23 42 42 H 1.07997 * 120.01105 * 180.02562 * 26 25 24 43 43 H 1.08001 * 120.01835 * 359.72954 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0185 2.3570 6 8 1.8584 1.1613 2.4117 7 7 2.5960 -0.6540 3.4575 8 6 2.7364 0.0769 4.7194 9 6 3.2518 -0.8556 5.7854 10 8 3.4788 -2.0165 5.5174 11 7 3.4603 -0.3994 7.0363 12 6 3.9286 -1.2479 8.0061 13 1 4.1307 -2.2815 7.7675 14 6 4.1440 -0.7774 9.2957 15 7 3.8985 0.4805 9.5858 16 14 4.7814 -1.9335 10.6173 17 1 6.1024 -2.4739 10.2071 18 1 4.9246 -1.1925 11.8961 19 1 3.8234 -3.0535 10.7992 20 6 2.0399 -0.7213 -1.2494 21 1 1.7515 -0.1582 -2.1370 22 8 1.4700 -2.0303 -1.3096 23 6 3.5418 -0.8295 -1.1891 24 6 4.1323 -1.8764 -0.5058 25 6 5.5098 -1.9766 -0.4492 26 6 6.2985 -1.0304 -1.0762 27 6 5.7083 0.0177 -1.7616 28 9 6.4781 0.9428 -2.3752 29 6 4.3281 0.1174 -1.8171 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 2.2490 -1.6319 1.1524 34 1 2.8260 -1.5953 3.4140 35 1 3.4383 0.9002 4.5863 36 1 1.7662 0.4717 5.0207 37 1 3.2783 0.5289 7.2506 38 1 4.0485 0.8088 10.4862 39 1 1.6856 -2.5884 -0.5500 40 1 3.5169 -2.6160 -0.0152 41 1 5.9699 -2.7950 0.0845 42 1 7.3747 -1.1091 -1.0322 43 1 3.8666 0.9325 -2.3547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807552249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:49 Heat of formation + Delta-G solvation = -162.431002 kcal Electronic energy + Delta-G solvation = -29018.955431 eV Core-core repulsion = 24591.541803 eV Total energy + Delta-G solvation = -4427.413627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.95122 -41.61236 -40.60122 -39.89222 -38.30445 -36.24529 -35.54925 -35.24188 -33.36885 -32.81741 -31.62023 -31.37659 -28.93639 -27.28401 -26.36236 -23.86149 -23.50245 -22.34643 -21.57614 -21.31518 -20.15195 -19.80655 -18.94422 -18.03005 -17.57673 -17.33708 -17.15559 -16.83871 -16.70587 -16.64299 -16.54080 -16.09995 -15.81208 -15.66714 -15.51247 -14.97837 -14.88195 -14.61292 -14.20819 -13.94019 -13.91674 -13.60118 -13.52666 -13.26300 -13.16164 -12.88942 -12.83683 -12.77381 -12.45712 -12.39706 -12.13439 -11.94070 -11.54456 -11.41655 -11.20585 -10.53390 -10.42679 -10.09415 -10.00514 -9.82203 -9.70379 -8.49696 -5.99917 0.09412 0.18801 1.39082 1.43082 1.52458 1.59032 1.91712 2.14770 2.29252 2.51927 3.01236 3.12325 3.17791 3.30130 3.37441 3.52718 3.72194 3.78050 4.04294 4.10814 4.22183 4.28065 4.34664 4.40247 4.44606 4.47718 4.55065 4.78542 4.85248 4.99701 5.01044 5.10161 5.28052 5.31275 5.36775 5.36975 5.40161 5.52738 5.86300 5.90277 5.94515 6.49299 6.58836 7.02033 7.04698 7.44460 7.55229 7.95732 8.67028 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.002464 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.545289 B =11360.099018 C =12363.775379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.083 0.917 4 N -0.725 5.725 5 C 0.708 3.292 6 O -0.629 6.629 7 N -0.722 5.722 8 C 0.142 3.858 9 C 0.435 3.565 10 O -0.622 6.622 11 N -0.560 5.560 12 C -0.337 4.337 13 H 0.088 0.912 14 C -0.011 4.011 15 N -0.917 5.917 16 Si 0.996 3.004 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.269 1.269 20 C 0.157 3.843 21 H 0.142 0.858 22 O -0.548 6.548 23 C -0.091 4.091 24 C -0.124 4.124 25 C -0.089 4.089 26 C -0.163 4.163 27 C 0.076 3.924 28 F -0.151 7.151 29 C -0.151 4.151 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.403 0.597 34 H 0.410 0.590 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.398 0.602 38 H 0.279 0.721 39 H 0.383 0.617 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 -3.307 -23.165 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.030 3.970 3 H 0.101 0.899 4 N -0.383 5.383 5 C 0.408 3.592 6 O -0.510 6.510 7 N -0.380 5.380 8 C 0.013 3.987 9 C 0.222 3.778 10 O -0.510 6.510 11 N -0.196 5.196 12 C -0.466 4.466 13 H 0.106 0.894 14 C -0.211 4.211 15 N -0.557 5.557 16 Si 0.819 3.181 17 H -0.194 1.194 18 H -0.198 1.198 19 H -0.194 1.194 20 C 0.097 3.903 21 H 0.160 0.840 22 O -0.355 6.355 23 C -0.092 4.092 24 C -0.142 4.142 25 C -0.107 4.107 26 C -0.182 4.182 27 C 0.057 3.943 28 F -0.129 7.129 29 C -0.170 4.170 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.240 0.760 34 H 0.248 0.752 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.232 0.768 38 H 0.089 0.911 39 H 0.233 0.767 40 H 0.167 0.833 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.302 -2.627 -23.679 23.936 hybrid contribution 1.060 -0.431 1.429 1.830 sum -1.242 -3.057 -22.251 22.494 Atomic orbital electron populations 1.22055 0.93643 1.03214 1.02317 1.21571 0.95214 0.97373 0.82820 0.89908 1.44942 1.71449 1.13878 1.08001 1.15890 0.77989 0.84586 0.80766 1.90891 1.58940 1.15938 1.85247 1.44644 1.70625 1.14837 1.07896 1.20556 1.02345 0.93361 0.82411 1.20391 0.84223 0.89008 0.84178 1.90460 1.59013 1.19809 1.81669 1.41839 1.56920 1.12934 1.07876 1.19708 1.42416 0.94695 0.89784 0.89420 1.26121 0.96920 0.98086 1.00011 1.69677 1.48053 1.15273 1.22732 0.84941 0.78825 0.77679 0.76641 1.19431 1.19800 1.19423 1.21135 0.86107 0.85033 0.98053 0.84038 1.86675 1.75323 1.24234 1.49250 1.20451 0.96904 0.94921 0.96885 1.21238 0.95405 0.98479 0.99090 1.21316 0.93673 0.98487 0.97203 1.21446 1.02129 0.94934 0.99666 1.17962 0.89376 0.89254 0.97675 1.91474 1.75499 1.64795 1.81180 1.21132 0.91540 1.01520 1.02798 0.90925 0.94168 0.89776 0.75972 0.75194 0.89401 0.89189 0.76783 0.91111 0.76699 0.83349 0.82804 0.83801 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.29 71.98 0.67 -1.82 16 2 C 0.14 2.25 2.47 44.99 0.11 2.36 16 3 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16 4 N -0.72 -13.84 4.27 -457.82 -1.96 -15.80 16 5 C 0.71 20.62 8.53 179.06 1.53 22.14 16 6 O -0.63 -23.04 16.00 -3.98 -0.06 -23.10 16 7 N -0.72 -22.17 5.53 -482.29 -2.67 -24.84 16 8 C 0.14 5.06 6.15 85.63 0.53 5.59 16 9 C 0.43 19.46 7.85 87.66 0.69 20.15 16 10 O -0.62 -30.73 15.24 -3.07 -0.05 -30.78 16 11 N -0.56 -27.63 5.29 -306.98 -1.62 -29.26 16 12 C -0.34 -18.23 9.68 84.04 0.81 -17.42 16 13 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 14 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 15 N -0.92 -48.43 13.05 21.66 0.28 -48.15 16 16 Si 1.00 41.15 29.55 68.60 2.03 43.18 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 C 0.16 1.88 3.12 29.85 0.09 1.97 16 21 H 0.14 1.29 8.05 -2.39 -0.02 1.27 16 22 O -0.55 -6.17 12.26 -148.98 -1.83 -8.00 16 23 C -0.09 -1.34 4.77 -19.87 -0.09 -1.43 16 24 C -0.12 -1.68 8.17 22.27 0.18 -1.49 16 25 C -0.09 -1.33 10.04 22.26 0.22 -1.11 16 26 C -0.16 -2.88 10.03 22.31 0.22 -2.66 16 27 C 0.08 1.53 7.30 22.38 0.16 1.69 16 28 F -0.15 -3.38 17.27 44.97 0.78 -2.60 16 29 C -0.15 -2.58 9.66 22.31 0.22 -2.36 16 30 H 0.07 1.06 7.56 -2.39 -0.02 1.04 16 31 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.40 5.41 5.64 -92.71 -0.52 4.89 16 34 H 0.41 11.94 7.45 -92.71 -0.69 11.25 16 35 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 38 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 39 H 0.38 2.42 6.25 -74.06 -0.46 1.95 16 40 H 0.15 1.15 5.63 -2.91 -0.02 1.13 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 43 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -70.38 370.62 -0.59 -70.97 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -1.30 Total: 42.84 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 5.81 Total: 25.53 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -5.97 Total: -118.04 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -1.94 Total: -61.88 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -70.38 -0.59 -70.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807552249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.459 kcal (2) G-P(sol) polarization free energy of solvation -70.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds