Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47229 * 239.99672 * 2 1 3 5 5 C 1.34777 * 119.99691 * 84.99836 * 4 2 1 6 6 O 1.21589 * 120.00286 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99578 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99640 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47243 * 180.02562 * 8 7 5 10 10 O 1.21295 * 119.99780 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00325 * 180.02562 * 9 8 7 12 12 C 1.37095 * 119.99950 * 179.97438 * 11 9 8 13 13 H 1.07994 * 119.99977 * 359.97438 * 12 11 9 14 14 C 1.38953 * 119.99798 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99813 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99767 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46898 * 60.00476 * 16 14 12 18 18 H 1.48508 * 109.46780 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47148 * 300.00033 * 16 14 12 20 20 C 1.52999 * 109.47312 * 119.99789 * 2 1 3 21 21 H 1.09000 * 109.47118 * 300.00607 * 20 2 1 22 22 O 1.42905 * 109.47166 * 59.99940 * 20 2 1 23 23 C 1.50691 * 109.47489 * 179.97438 * 20 2 1 24 24 C 1.38275 * 119.98701 * 99.99923 * 23 20 2 25 25 C 1.38217 * 120.05337 * 179.74861 * 24 23 20 26 26 C 1.38225 * 120.02811 * 359.95316 * 25 24 23 27 27 C 1.38443 * 119.96927 * 0.02781 * 26 25 24 28 28 F 1.35099 * 120.02154 * 179.97438 * 27 26 25 29 29 C 1.38176 * 119.98997 * 279.72858 * 23 20 2 30 30 H 1.09000 * 109.47545 * 60.00276 * 1 2 3 31 31 H 1.09000 * 109.47127 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47524 * 299.99853 * 1 2 3 33 33 H 0.97003 * 120.00252 * 265.00371 * 4 2 1 34 34 H 0.96997 * 120.00124 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47247 * 299.99484 * 8 7 5 36 36 H 1.09000 * 109.47778 * 59.99139 * 8 7 5 37 37 H 0.97000 * 119.99376 * 359.97438 * 11 9 8 38 38 H 0.97010 * 119.99610 * 179.97438 * 15 14 12 39 39 H 0.96701 * 113.99802 * 60.00033 * 22 20 2 40 40 H 1.07997 * 119.96974 * 359.72750 * 24 23 20 41 41 H 1.08000 * 119.99040 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.01808 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.01117 * 0.25004 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1615 -2.4117 7 7 2.5958 -0.6539 -3.4577 8 6 2.7362 0.0770 -4.7195 9 6 3.2515 -0.8553 -5.7855 10 8 3.4794 -2.0161 -5.5174 11 7 3.4599 -0.3992 -7.0365 12 6 3.9291 -1.2473 -8.0060 13 1 4.1321 -2.2807 -7.7673 14 6 4.1435 -0.7771 -9.2959 15 7 3.8970 0.4806 -9.5862 16 14 4.7836 -1.9325 -10.6168 17 1 3.8280 -3.0546 -10.7983 18 1 4.9262 -1.1915 -11.8959 19 1 6.1058 -2.4697 -10.2064 20 6 2.0400 -0.7212 1.2492 21 1 1.6766 -0.2074 2.1392 22 8 1.5637 -2.0685 1.2493 23 6 3.5469 -0.7218 1.2490 24 6 4.2385 0.1956 2.0185 25 6 5.6207 0.1929 2.0233 26 6 6.3133 -0.7276 1.2594 27 6 5.6219 -1.6468 0.4889 28 9 6.2978 -2.5467 -0.2585 29 6 4.2371 -1.6426 0.4841 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6319 -1.1526 34 1 2.8265 -1.5950 -3.4140 35 1 1.7658 0.4717 -5.0207 36 1 3.4378 0.9005 -4.5864 37 1 3.2779 0.5292 -7.2507 38 1 4.0471 0.8090 -10.4866 39 1 1.8490 -2.5866 0.4843 40 1 3.6982 0.9149 2.6160 41 1 6.1598 0.9101 2.6244 42 1 7.3932 -0.7298 1.2636 43 1 3.6967 -2.3592 -0.1166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807552250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = -136.284562 kcal Electronic energy + Delta-G solvation = -29192.413692 eV Core-core repulsion = 24766.133859 eV Total energy + Delta-G solvation = -4426.279833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.09443 -40.68857 -39.49356 -38.28033 -37.54889 -34.76378 -34.34954 -33.67607 -31.93312 -31.40182 -31.17206 -30.49266 -27.39286 -26.58570 -24.53192 -23.16500 -22.60647 -21.55765 -20.58314 -19.59771 -18.80489 -18.25328 -18.00627 -17.22379 -16.55118 -16.52014 -15.91928 -15.79988 -15.58538 -15.46510 -15.12710 -14.86742 -14.51277 -14.34481 -14.18061 -14.09577 -13.74004 -13.45551 -13.33816 -13.18640 -12.61029 -12.52128 -12.21745 -12.18812 -12.05565 -11.92271 -11.74563 -11.62813 -11.28708 -11.10295 -10.54111 -10.50772 -10.31823 -10.08724 -9.62587 -9.34593 -9.29531 -8.98592 -8.66874 -8.62908 -8.10029 -6.51333 -3.93388 0.76888 0.84201 2.66987 3.13787 3.17493 3.21576 3.25574 3.34509 3.74954 3.81272 3.93190 4.07471 4.11695 4.30370 4.35127 4.43919 4.64969 4.77664 4.88545 4.89276 5.02664 5.10865 5.17340 5.22168 5.39077 5.52620 5.65560 5.74865 5.75983 5.89321 5.92139 5.99058 6.01985 6.07419 6.09531 6.39350 6.51744 6.71396 6.95615 7.04039 7.45903 7.92154 8.15067 8.45145 8.73404 9.04613 9.39371 9.87326 10.65487 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.002603 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.825257 B =10752.949932 C =11909.744732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 H 0.100 0.900 4 N -0.745 5.745 5 C 0.709 3.291 6 O -0.594 6.594 7 N -0.723 5.723 8 C 0.129 3.871 9 C 0.428 3.572 10 O -0.598 6.598 11 N -0.548 5.548 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.142 3.858 21 H 0.127 0.873 22 O -0.545 6.545 23 C -0.086 4.086 24 C -0.120 4.120 25 C -0.087 4.087 26 C -0.154 4.154 27 C 0.107 3.893 28 F -0.135 7.135 29 C -0.142 4.142 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.388 0.612 34 H 0.406 0.594 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.372 0.628 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.390 0.258 24.364 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.118 0.882 4 N -0.403 5.403 5 C 0.408 3.592 6 O -0.472 6.472 7 N -0.380 5.380 8 C 0.000 4.000 9 C 0.214 3.786 10 O -0.484 6.484 11 N -0.183 5.183 12 C -0.435 4.435 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.760 3.240 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C 0.082 3.918 21 H 0.144 0.856 22 O -0.351 6.351 23 C -0.087 4.087 24 C -0.138 4.138 25 C -0.105 4.105 26 C -0.173 4.173 27 C 0.088 3.912 28 F -0.113 7.113 29 C -0.161 4.161 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.222 0.778 34 H 0.243 0.757 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.221 0.779 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.725 0.851 24.774 24.849 hybrid contribution 0.958 -1.094 -1.615 2.173 sum -0.767 -0.243 23.159 23.173 Atomic orbital electron populations 1.22120 0.94168 1.02846 1.02690 1.21461 0.94913 0.97939 0.82765 0.88197 1.45103 1.72784 1.13235 1.09168 1.15783 0.78337 0.84959 0.80098 1.90906 1.57485 1.14215 1.84605 1.44769 1.70077 1.14848 1.08338 1.20785 1.02101 0.94287 0.82777 1.19755 0.85907 0.88878 0.84093 1.90492 1.58338 1.18462 1.81150 1.41775 1.56176 1.13003 1.07372 1.19679 1.40492 0.94900 0.88435 0.87742 1.25322 0.97252 0.96597 0.98497 1.69611 1.47773 1.14085 1.22027 0.85877 0.79477 0.79529 0.79107 1.19770 1.20844 1.19772 1.21281 0.87779 0.83966 0.98787 0.85562 1.86667 1.76293 1.22683 1.49437 1.20312 0.96536 0.95594 0.96260 1.21029 0.94348 0.98905 0.99542 1.21010 0.94085 0.97570 0.97811 1.21223 1.01123 0.96364 0.98571 1.17655 0.90007 0.90022 0.93501 1.91551 1.80144 1.65394 1.74248 1.20779 0.92534 1.01233 1.01530 0.91511 0.91747 0.91653 0.77774 0.75696 0.89993 0.90059 0.77025 0.91533 0.77936 0.85022 0.84770 0.84611 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.34 37.16 0.35 -1.10 16 2 C 0.14 1.26 2.40 -67.93 -0.16 1.09 16 3 H 0.10 1.08 7.58 -51.93 -0.39 0.69 16 4 N -0.74 -8.14 4.19 -58.68 -0.25 -8.38 16 5 C 0.71 10.99 8.53 -86.91 -0.74 10.25 16 6 O -0.59 -11.10 16.01 5.29 0.08 -11.02 16 7 N -0.72 -11.93 5.53 -66.41 -0.37 -12.30 16 8 C 0.13 2.39 6.15 -5.19 -0.03 2.36 16 9 C 0.43 9.82 7.85 -10.99 -0.09 9.74 16 10 O -0.60 -15.25 15.24 5.54 0.08 -15.17 16 11 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 12 C -0.31 -8.33 9.68 -14.93 -0.14 -8.47 16 13 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 14 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 15 N -0.89 -23.94 13.05 55.50 0.72 -23.22 16 16 Si 0.93 20.60 29.55 -169.99 -5.02 15.57 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 20 C 0.14 1.04 3.09 -27.89 -0.09 0.95 16 21 H 0.13 0.71 8.01 -51.93 -0.42 0.30 16 22 O -0.55 -4.23 12.51 -35.23 -0.44 -4.67 16 23 C -0.09 -0.72 4.88 -104.64 -0.51 -1.23 16 24 C -0.12 -0.89 9.67 -39.58 -0.38 -1.28 16 25 C -0.09 -0.65 10.04 -39.59 -0.40 -1.05 16 26 C -0.15 -1.40 10.03 -39.51 -0.40 -1.79 16 27 C 0.11 1.16 7.30 -39.42 -0.29 0.88 16 28 F -0.13 -1.70 17.27 2.25 0.04 -1.66 16 29 C -0.14 -1.35 8.30 -39.51 -0.33 -1.68 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.39 3.41 5.48 -40.82 -0.22 3.18 16 34 H 0.41 6.54 7.45 -40.82 -0.30 6.23 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.37 2.17 6.12 45.56 0.28 2.45 16 40 H 0.13 0.65 8.04 -52.49 -0.42 0.23 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.02 5.49 -52.49 -0.29 0.73 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -33.42 370.61 -7.46 -40.88 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -4.54 Total: 18.81 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -3.31 Total: 9.25 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.05 Total: -57.59 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.27 Total: -30.86 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.42 -7.46 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807552250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.402 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds