Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47229 * 239.99672 * 2 1 3 5 5 C 1.34777 * 119.99691 * 84.99836 * 4 2 1 6 6 O 1.21589 * 120.00286 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99578 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99640 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47243 * 180.02562 * 8 7 5 10 10 O 1.21295 * 119.99780 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00325 * 180.02562 * 9 8 7 12 12 C 1.37095 * 119.99950 * 179.97438 * 11 9 8 13 13 H 1.07994 * 119.99977 * 359.97438 * 12 11 9 14 14 C 1.38953 * 119.99798 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99813 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99767 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46898 * 60.00476 * 16 14 12 18 18 H 1.48508 * 109.46780 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47148 * 300.00033 * 16 14 12 20 20 C 1.52999 * 109.47312 * 119.99789 * 2 1 3 21 21 H 1.09000 * 109.47118 * 300.00607 * 20 2 1 22 22 O 1.42905 * 109.47166 * 59.99940 * 20 2 1 23 23 C 1.50691 * 109.47489 * 179.97438 * 20 2 1 24 24 C 1.38275 * 119.98701 * 99.99923 * 23 20 2 25 25 C 1.38217 * 120.05337 * 179.74861 * 24 23 20 26 26 C 1.38225 * 120.02811 * 359.95316 * 25 24 23 27 27 C 1.38443 * 119.96927 * 0.02781 * 26 25 24 28 28 F 1.35099 * 120.02154 * 179.97438 * 27 26 25 29 29 C 1.38176 * 119.98997 * 279.72858 * 23 20 2 30 30 H 1.09000 * 109.47545 * 60.00276 * 1 2 3 31 31 H 1.09000 * 109.47127 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47524 * 299.99853 * 1 2 3 33 33 H 0.97003 * 120.00252 * 265.00371 * 4 2 1 34 34 H 0.96997 * 120.00124 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47247 * 299.99484 * 8 7 5 36 36 H 1.09000 * 109.47778 * 59.99139 * 8 7 5 37 37 H 0.97000 * 119.99376 * 359.97438 * 11 9 8 38 38 H 0.97010 * 119.99610 * 179.97438 * 15 14 12 39 39 H 0.96701 * 113.99802 * 60.00033 * 22 20 2 40 40 H 1.07997 * 119.96974 * 359.72750 * 24 23 20 41 41 H 1.08000 * 119.99040 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.01808 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.01117 * 0.25004 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1615 -2.4117 7 7 2.5958 -0.6539 -3.4577 8 6 2.7362 0.0770 -4.7195 9 6 3.2515 -0.8553 -5.7855 10 8 3.4794 -2.0161 -5.5174 11 7 3.4599 -0.3992 -7.0365 12 6 3.9291 -1.2473 -8.0060 13 1 4.1321 -2.2807 -7.7673 14 6 4.1435 -0.7771 -9.2959 15 7 3.8970 0.4806 -9.5862 16 14 4.7836 -1.9325 -10.6168 17 1 3.8280 -3.0546 -10.7983 18 1 4.9262 -1.1915 -11.8959 19 1 6.1058 -2.4697 -10.2064 20 6 2.0400 -0.7212 1.2492 21 1 1.6766 -0.2074 2.1392 22 8 1.5637 -2.0685 1.2493 23 6 3.5469 -0.7218 1.2490 24 6 4.2385 0.1956 2.0185 25 6 5.6207 0.1929 2.0233 26 6 6.3133 -0.7276 1.2594 27 6 5.6219 -1.6468 0.4889 28 9 6.2978 -2.5467 -0.2585 29 6 4.2371 -1.6426 0.4841 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6319 -1.1526 34 1 2.8265 -1.5950 -3.4140 35 1 1.7658 0.4717 -5.0207 36 1 3.4378 0.9005 -4.5864 37 1 3.2779 0.5292 -7.2507 38 1 4.0471 0.8090 -10.4866 39 1 1.8490 -2.5866 0.4843 40 1 3.6982 0.9149 2.6160 41 1 6.1598 0.9101 2.6244 42 1 7.3932 -0.7298 1.2636 43 1 3.6967 -2.3592 -0.1166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807552250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = -161.887290 kcal Electronic energy + Delta-G solvation = -29193.523909 eV Core-core repulsion = 24766.133859 eV Total energy + Delta-G solvation = -4427.390050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -49.94609 -41.62324 -40.60458 -39.91330 -38.33426 -36.27025 -35.55463 -35.26457 -33.39129 -32.64240 -31.92319 -31.28792 -28.96662 -27.24329 -26.38728 -23.89334 -23.37536 -22.42771 -21.59740 -21.34251 -20.18170 -19.84417 -18.95568 -18.11949 -17.52689 -17.33212 -17.14542 -16.86619 -16.68448 -16.64072 -16.55653 -16.09284 -15.83185 -15.69005 -15.51470 -15.00292 -14.93037 -14.58847 -14.21556 -13.95358 -13.92827 -13.61275 -13.54627 -13.26380 -13.19100 -12.90768 -12.88050 -12.67518 -12.47840 -12.40711 -12.14343 -11.97888 -11.56967 -11.44145 -11.19208 -10.56531 -10.43957 -10.11290 -9.98990 -9.90854 -9.65881 -8.51616 -6.01903 0.11209 0.18860 1.37385 1.41399 1.50548 1.57108 1.89260 2.11450 2.27753 2.53105 2.98959 3.15128 3.15607 3.23032 3.43543 3.47622 3.69471 3.76442 4.05304 4.15752 4.19887 4.29678 4.34157 4.39849 4.42258 4.45272 4.60545 4.75595 4.83368 4.99315 5.03835 5.11736 5.28261 5.30123 5.35729 5.37820 5.38726 5.51584 5.85005 5.88263 5.91907 6.47392 6.51303 6.95793 7.02740 7.41638 7.51283 7.93852 8.65101 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.002603 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.825257 B =10752.949932 C =11909.744732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.134 3.866 3 H 0.089 0.911 4 N -0.728 5.728 5 C 0.709 3.291 6 O -0.625 6.625 7 N -0.725 5.725 8 C 0.143 3.857 9 C 0.433 3.567 10 O -0.624 6.624 11 N -0.559 5.559 12 C -0.339 4.339 13 H 0.086 0.914 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.996 3.004 17 H -0.269 1.269 18 H -0.271 1.271 19 H -0.270 1.270 20 C 0.155 3.845 21 H 0.153 0.847 22 O -0.552 6.552 23 C -0.095 4.095 24 C -0.118 4.118 25 C -0.088 4.088 26 C -0.163 4.163 27 C 0.071 3.929 28 F -0.155 7.155 29 C -0.153 4.153 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.399 0.601 34 H 0.408 0.592 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.379 0.621 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.144 0.856 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 0.720 25.936 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 H 0.107 0.893 4 N -0.386 5.386 5 C 0.408 3.592 6 O -0.506 6.506 7 N -0.383 5.383 8 C 0.014 3.986 9 C 0.220 3.780 10 O -0.512 6.512 11 N -0.194 5.194 12 C -0.468 4.468 13 H 0.104 0.896 14 C -0.210 4.210 15 N -0.556 5.556 16 Si 0.819 3.181 17 H -0.194 1.194 18 H -0.196 1.196 19 H -0.196 1.196 20 C 0.095 3.905 21 H 0.170 0.830 22 O -0.358 6.358 23 C -0.095 4.095 24 C -0.135 4.135 25 C -0.105 4.105 26 C -0.182 4.182 27 C 0.052 3.948 28 F -0.134 7.134 29 C -0.172 4.172 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.236 0.764 34 H 0.245 0.755 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.228 0.772 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.162 0.838 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.155 1.298 26.388 26.508 hybrid contribution 1.068 -1.214 -1.986 2.561 sum -1.087 0.084 24.402 24.427 Atomic orbital electron populations 1.22070 0.93686 1.02994 1.02548 1.21633 0.95205 0.97571 0.82693 0.89309 1.45025 1.71500 1.13737 1.08313 1.15874 0.77976 0.84629 0.80679 1.90884 1.58881 1.15647 1.85204 1.44703 1.70646 1.14813 1.08114 1.20564 1.02446 0.93297 0.82280 1.20431 0.84315 0.89018 0.84265 1.90470 1.59062 1.19985 1.81692 1.41820 1.56831 1.12941 1.07817 1.19699 1.42539 0.94701 0.89841 0.89617 1.26121 0.96853 0.98129 0.99941 1.69677 1.47920 1.15218 1.22766 0.84942 0.78771 0.77688 0.76675 1.19442 1.19553 1.19554 1.21286 0.87004 0.83766 0.98397 0.82953 1.86661 1.76341 1.22854 1.49963 1.20513 0.97121 0.95606 0.96307 1.21474 0.94575 0.98629 0.98860 1.21394 0.94465 0.97337 0.97330 1.21489 1.01864 0.96356 0.98504 1.18061 0.90853 0.91016 0.94912 1.91491 1.80601 1.66260 1.74998 1.20958 0.92251 1.01932 1.02044 0.94180 0.91404 0.89267 0.76413 0.75463 0.88978 0.89266 0.76704 0.91038 0.77150 0.81972 0.81932 0.83794 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.34 71.98 0.67 -1.84 16 2 C 0.13 2.24 2.40 44.99 0.11 2.35 16 3 H 0.09 1.76 7.58 -2.39 -0.02 1.74 16 4 N -0.73 -15.15 4.19 -457.81 -1.92 -17.07 16 5 C 0.71 21.58 8.53 179.05 1.53 23.11 16 6 O -0.63 -23.09 16.01 -4.00 -0.06 -23.16 16 7 N -0.73 -23.78 5.53 -482.28 -2.67 -26.44 16 8 C 0.14 5.29 6.15 85.63 0.53 5.81 16 9 C 0.43 20.12 7.85 87.66 0.69 20.81 16 10 O -0.62 -32.39 15.24 -3.08 -0.05 -32.44 16 11 N -0.56 -28.26 5.29 -306.99 -1.62 -29.88 16 12 C -0.34 -18.77 9.68 84.04 0.81 -17.96 16 13 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 14 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 15 N -0.92 -48.89 13.05 21.66 0.28 -48.61 16 16 Si 1.00 41.98 29.55 68.60 2.03 44.00 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 C 0.16 1.85 3.09 29.85 0.09 1.94 16 21 H 0.15 1.08 8.01 -2.39 -0.02 1.06 16 22 O -0.55 -7.23 12.51 -148.98 -1.86 -9.09 16 23 C -0.09 -1.39 4.88 -19.87 -0.10 -1.49 16 24 C -0.12 -1.41 9.67 22.27 0.22 -1.19 16 25 C -0.09 -1.11 10.04 22.26 0.22 -0.89 16 26 C -0.16 -2.86 10.03 22.32 0.22 -2.63 16 27 C 0.07 1.55 7.30 22.38 0.16 1.71 16 28 F -0.15 -4.10 17.27 44.97 0.78 -3.32 16 29 C -0.15 -2.82 8.30 22.31 0.19 -2.63 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.06 7.68 -2.39 -0.02 1.04 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.40 6.61 5.48 -92.71 -0.51 6.10 16 34 H 0.41 13.14 7.45 -92.71 -0.69 12.45 16 35 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 36 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 38 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 39 H 0.38 3.76 6.12 -74.06 -0.45 3.30 16 40 H 0.16 0.91 8.04 -2.91 -0.02 0.88 16 41 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 42 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 43 H 0.13 2.10 5.49 -2.91 -0.02 2.09 16 Total: -1.00 -72.52 370.61 -0.56 -73.08 By element: Atomic # 1 Polarization: 47.14 SS G_CDS: -1.27 Total: 45.87 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 5.81 Total: 27.06 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -5.93 Total: -122.01 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: -1.97 Total: -64.69 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -72.52 -0.56 -73.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807552250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.806 kcal (2) G-P(sol) polarization free energy of solvation -72.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds