Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47052 * 2 1 4 4 N 1.46504 * 109.47278 * 240.00047 * 2 1 3 5 5 C 1.39901 * 119.99807 * 84.99690 * 4 2 1 6 6 C 1.38891 * 119.99960 * 359.97438 * 5 4 2 7 7 C 1.38105 * 120.03075 * 180.02562 * 6 5 4 8 8 C 1.38777 * 120.03144 * 359.72421 * 7 6 5 9 9 N 1.40322 * 120.00126 * 180.27529 * 8 7 6 10 10 C 1.34780 * 120.00128 * 24.78346 * 9 8 7 11 11 O 1.21514 * 119.99865 * 5.63002 * 10 9 8 12 12 O 1.34662 * 119.99577 * 185.63621 * 10 9 8 13 13 C 1.39023 * 119.99229 * 0.55291 * 8 7 6 14 14 F 1.35099 * 120.01554 * 179.71956 * 13 8 7 15 15 C 1.38260 * 119.96406 * 359.44709 * 13 8 7 16 16 C 1.50694 * 109.47214 * 119.99921 * 2 1 3 17 17 O 1.21284 * 120.00201 * 120.00074 * 16 2 1 18 18 N 1.34774 * 120.00352 * 299.99852 * 16 2 1 19 19 C 1.46502 * 119.99832 * 0.02562 * 18 16 2 20 20 C 1.46501 * 120.00435 * 179.97438 * 18 16 2 21 21 C 1.50706 * 109.46679 * 90.00289 * 20 18 16 22 22 H 1.08001 * 119.99924 * 0.02562 * 21 20 18 23 23 C 1.37877 * 119.99741 * 179.97438 * 21 20 18 24 24 N 1.31509 * 120.00154 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99932 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46895 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47084 * 120.00390 * 25 23 21 28 28 H 1.48499 * 109.47145 * 240.00551 * 25 23 21 29 29 H 1.08995 * 109.47133 * 299.99750 * 1 2 3 30 30 H 1.08996 * 109.47008 * 60.00469 * 1 2 3 31 31 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99940 * 264.99831 * 4 2 1 33 33 H 1.07994 * 119.97809 * 0.04558 * 6 5 4 34 34 H 1.08005 * 119.98200 * 180.02562 * 7 6 5 35 35 H 0.96998 * 119.99740 * 204.77915 * 9 8 7 36 36 H 0.96705 * 116.99536 * 179.97438 * 12 10 9 37 37 H 1.07997 * 120.01248 * 180.25187 * 15 13 8 38 38 H 1.09001 * 109.47375 * 89.99193 * 19 18 16 39 39 H 1.08998 * 109.47499 * 210.00056 * 19 18 16 40 40 H 1.09009 * 109.46618 * 329.99403 * 19 18 16 41 41 H 1.08999 * 109.47285 * 209.99689 * 20 18 16 42 42 H 1.08993 * 109.46991 * 330.00532 * 20 18 16 43 43 H 0.97003 * 120.00249 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1519 0.0073 -2.4013 6 6 1.8210 1.3548 -2.4637 7 6 1.9521 2.0443 -3.6532 8 6 2.4200 1.3928 -4.7857 9 7 2.5584 2.0954 -5.9924 10 6 2.7316 3.4320 -5.9780 11 8 2.8704 4.0153 -4.9211 12 8 2.7507 4.1208 -7.1350 13 6 2.7461 0.0427 -4.7259 14 9 3.1963 -0.5933 -5.8295 15 6 2.6148 -0.6473 -3.5350 16 6 2.0323 -0.7104 1.2304 17 8 2.7296 -1.6965 1.1192 18 7 1.7068 -0.2499 2.4545 19 6 0.8641 0.9409 2.5890 20 6 2.1947 -0.9408 3.6507 21 6 3.5224 -0.3578 4.0611 22 1 3.9589 0.4472 3.4884 23 6 4.1794 -0.8513 5.1682 24 7 3.6477 -1.8311 5.8659 25 14 5.8248 -0.1281 5.6773 26 1 6.2022 0.9555 4.7347 27 1 5.7182 0.4261 7.0509 28 1 6.8619 -1.1907 5.6514 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6318 -1.1526 33 1 1.4614 1.8636 -1.5817 34 1 1.6949 3.0922 -3.7008 35 1 2.5296 1.6192 -6.8369 36 1 2.8774 5.0776 -7.0741 37 1 2.8718 -1.6952 -3.4867 38 1 -0.1838 0.6426 2.6224 39 1 1.1219 1.4665 3.5084 40 1 1.0274 1.5996 1.7359 41 1 1.4767 -0.8152 4.4612 42 1 2.3155 -2.0020 3.4335 43 1 4.1101 -2.1786 6.6446 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833526843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = -117.420409 kcal Electronic energy + Delta-G solvation = -28939.714195 eV Core-core repulsion = 24514.252373 eV Total energy + Delta-G solvation = -4425.461822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.11878 -41.04669 -39.93519 -38.92856 -36.93439 -35.86585 -35.06162 -34.46166 -32.73501 -31.29603 -30.41118 -28.14061 -27.51177 -26.22614 -24.33696 -23.80810 -23.15346 -22.04734 -21.18060 -19.70480 -18.76361 -18.14920 -17.90581 -16.92594 -16.87049 -16.63115 -16.48377 -16.09816 -15.74116 -15.69434 -15.15707 -14.86930 -14.60652 -14.06182 -13.93414 -13.89412 -13.80143 -13.38825 -13.11434 -12.87833 -12.62709 -12.37261 -12.26456 -12.20689 -11.99144 -11.93167 -11.54367 -11.34730 -11.20313 -11.12426 -10.91519 -10.70223 -10.64590 -10.21700 -9.68235 -9.53333 -9.04368 -8.97365 -8.49376 -7.78968 -7.34238 -6.10238 -4.15231 1.02578 1.19242 1.91519 2.43123 3.11448 3.19774 3.26953 3.35092 3.39709 3.56994 3.87452 4.08363 4.13488 4.40332 4.64385 4.79611 4.92684 5.06795 5.14142 5.16013 5.23146 5.25330 5.34655 5.52830 5.65082 5.67358 5.81502 5.88189 5.91886 6.01489 6.05836 6.10755 6.20616 6.31034 6.61342 6.89965 6.91289 7.16948 7.33517 7.41758 7.68375 7.85589 7.93784 8.15405 8.25249 8.77740 8.93475 9.50261 10.97912 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.002335 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.507566 B =11990.359870 C =12279.049265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.127 3.873 3 H 0.102 0.898 4 N -0.716 5.716 5 C 0.247 3.753 6 C -0.190 4.190 7 C -0.050 4.050 8 C 0.055 3.945 9 N -0.639 5.639 10 C 0.665 3.335 11 O -0.560 6.560 12 O -0.524 6.524 13 C 0.127 3.873 14 F -0.138 7.138 15 C -0.214 4.214 16 C 0.502 3.498 17 O -0.536 6.536 18 N -0.595 5.595 19 C 0.077 3.923 20 C 0.245 3.755 21 C -0.528 4.528 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.898 3.102 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.412 0.588 33 H 0.135 0.865 34 H 0.155 0.845 35 H 0.417 0.583 36 H 0.433 0.567 37 H 0.141 0.859 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.044 0.956 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.588 9.477 -22.920 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.018 3.982 3 H 0.119 0.881 4 N -0.345 5.345 5 C 0.140 3.860 6 C -0.214 4.214 7 C -0.070 4.070 8 C -0.040 4.040 9 N -0.291 5.291 10 C 0.417 3.583 11 O -0.449 6.449 12 O -0.335 6.335 13 C 0.104 3.896 14 F -0.117 7.117 15 C -0.238 4.238 16 C 0.287 3.713 17 O -0.414 6.414 18 N -0.327 5.327 19 C -0.067 4.067 20 C 0.126 3.874 21 C -0.566 4.566 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.250 0.750 33 H 0.152 0.848 34 H 0.172 0.828 35 H 0.253 0.747 36 H 0.293 0.707 37 H 0.158 0.842 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.234 8.856 -22.238 25.313 hybrid contribution 1.257 0.301 -0.153 1.301 sum -6.977 9.156 -22.391 25.177 Atomic orbital electron populations 1.22477 0.93680 1.03614 1.03606 1.20836 0.95111 0.97482 0.84822 0.88064 1.44592 1.71144 1.13181 1.05570 1.17546 0.91792 0.91064 0.85558 1.20687 1.09146 0.92631 0.98899 1.21041 0.94817 1.01066 0.90085 1.17123 1.10122 0.89806 0.86964 1.41578 1.74215 1.04229 1.09066 1.17639 0.76086 0.82718 0.81829 1.91047 1.54317 1.68970 1.30557 1.84167 1.87339 1.28006 1.33947 1.16871 1.00413 0.88918 0.83364 1.91471 1.86830 1.82046 1.51329 1.20246 1.11522 1.01515 0.90563 1.20207 0.81274 0.85336 0.84506 1.90675 1.37904 1.26845 1.85959 1.48091 1.49317 1.28157 1.07086 1.21870 0.93900 0.88036 1.02845 1.19345 0.94392 0.93699 0.79952 1.21445 1.04783 1.19156 1.11257 0.92379 1.24937 0.98008 0.94925 0.96228 1.69934 1.38975 1.26038 1.18351 0.86434 0.83631 0.79095 0.78231 1.19755 1.20906 1.20843 0.89835 0.91426 0.91751 0.74998 0.84772 0.82798 0.74671 0.70667 0.84155 0.93023 0.90489 0.92186 0.94735 0.93765 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.06 37.16 0.34 -1.55 16 2 C 0.13 1.74 1.87 -69.08 -0.13 1.61 16 3 H 0.10 1.28 5.74 -51.93 -0.30 0.98 16 4 N -0.72 -9.61 5.13 -53.25 -0.27 -9.88 16 5 C 0.25 3.02 6.64 -83.70 -0.56 2.46 16 6 C -0.19 -2.17 8.85 -39.39 -0.35 -2.51 16 7 C -0.05 -0.57 8.71 -39.43 -0.34 -0.91 16 8 C 0.05 0.61 6.44 -83.48 -0.54 0.07 16 9 N -0.64 -5.92 5.33 -14.15 -0.08 -6.00 16 10 C 0.66 6.42 8.93 54.06 0.48 6.90 16 11 O -0.56 -7.10 14.30 -19.28 -0.28 -7.38 16 12 O -0.52 -3.22 13.48 -40.38 -0.54 -3.77 16 13 C 0.13 1.43 7.30 -39.28 -0.29 1.14 16 14 F -0.14 -1.51 16.80 2.25 0.04 -1.47 16 15 C -0.21 -2.48 9.87 -39.34 -0.39 -2.87 16 16 C 0.50 9.69 7.14 -10.99 -0.08 9.61 16 17 O -0.54 -12.68 15.42 5.55 0.09 -12.59 16 18 N -0.59 -11.77 2.86 -182.95 -0.52 -12.29 16 19 C 0.08 1.10 8.80 59.85 0.53 1.62 16 20 C 0.25 6.18 5.16 -5.19 -0.03 6.15 16 21 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 22 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 25 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 29 H 0.08 0.81 4.53 -51.93 -0.24 0.57 16 30 H 0.07 0.62 7.70 -51.93 -0.40 0.22 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.41 5.86 7.80 -40.82 -0.32 5.54 16 33 H 0.13 1.35 6.10 -52.49 -0.32 1.03 16 34 H 0.15 1.79 5.78 -52.48 -0.30 1.48 16 35 H 0.42 2.95 8.55 -40.82 -0.35 2.60 16 36 H 0.43 0.73 9.11 45.56 0.42 1.15 16 37 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 39 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 40 H 0.06 0.67 6.01 -51.92 -0.31 0.36 16 41 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 42 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -35.09 365.26 -6.21 -41.31 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.10 Total: 6.94 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -1.77 Total: 8.39 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.13 Total: -53.61 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.73 Total: -23.74 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.09 -6.21 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833526843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.113 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds