Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46791 * 2 1 4 4 N 1.46904 * 109.47169 * 119.99700 * 2 1 3 5 5 C 1.52991 * 109.47351 * 240.00042 * 2 1 3 6 6 N 1.46507 * 109.47273 * 184.99954 * 5 2 1 7 7 C 1.46500 * 119.99959 * 269.99990 * 6 5 2 8 8 C 1.34771 * 120.00260 * 89.99278 * 6 5 2 9 9 O 1.21366 * 119.99849 * 0.81669 * 8 6 5 10 10 C 1.49311 * 120.00250 * 180.80549 * 8 6 5 11 11 O 1.21391 * 119.99780 * 355.48419 * 10 8 6 12 12 N 1.34780 * 119.99823 * 175.48591 * 10 8 6 13 13 C 1.39810 * 119.99361 * 185.35353 * 12 10 8 14 14 C 1.38792 * 120.08770 * 33.10120 * 13 12 10 15 15 C 1.38150 * 120.01635 * 179.97438 * 14 13 12 16 16 C 1.38583 * 120.18569 * 0.02562 * 15 14 13 17 17 F 1.35101 * 119.91593 * 179.97438 * 16 15 14 18 18 C 1.38347 * 120.17010 * 359.97438 * 16 15 14 19 19 C 1.38730 * 119.98223 * 359.97438 * 18 16 15 20 20 O 1.35755 * 120.09392 * 180.29837 * 19 18 16 21 21 C 1.34793 * 116.99861 * 354.29104 * 20 19 18 22 22 H 1.08003 * 120.00236 * 5.08298 * 21 20 19 23 23 C 1.38655 * 120.00388 * 185.08179 * 21 20 19 24 24 N 1.31552 * 120.00347 * 179.97438 * 23 21 20 25 25 Si 1.86809 * 119.99559 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.46944 * 90.00132 * 25 23 21 27 27 H 1.48504 * 109.46756 * 209.99842 * 25 23 21 28 28 H 1.48503 * 109.46811 * 329.99721 * 25 23 21 29 29 H 1.08998 * 109.47550 * 299.99732 * 1 2 3 30 30 H 1.09003 * 109.47073 * 60.00317 * 1 2 3 31 31 H 1.09000 * 109.46464 * 179.97438 * 1 2 3 32 32 H 1.00898 * 110.99790 * 300.00510 * 4 2 1 33 33 H 1.00897 * 110.99632 * 63.95450 * 4 2 1 34 34 H 1.08999 * 109.47635 * 65.00001 * 5 2 1 35 35 H 1.08996 * 109.47698 * 304.99546 * 5 2 1 36 36 H 1.08997 * 109.47257 * 263.59736 * 7 6 5 37 37 H 1.09002 * 109.47005 * 23.59914 * 7 6 5 38 38 H 1.09001 * 109.47233 * 143.59700 * 7 6 5 39 39 H 0.96991 * 119.99930 * 5.34947 * 12 10 8 40 40 H 1.08002 * 119.99602 * 359.97160 * 14 13 12 41 41 H 1.07995 * 119.90726 * 180.02562 * 15 14 13 42 42 H 1.08003 * 120.00536 * 180.02562 * 18 16 15 43 43 H 0.97004 * 119.99866 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0400 -0.7212 -1.2492 6 7 3.5001 -0.8263 -1.1905 7 6 4.3344 0.2342 -1.7612 8 6 4.0759 -1.8985 -0.6114 9 8 3.3849 -2.7840 -0.1517 10 6 5.5638 -1.9970 -0.5355 11 8 6.2558 -1.1531 -1.0671 12 7 6.1385 -3.0229 0.1230 13 6 7.5261 -3.0563 0.2904 14 6 8.2376 -1.8741 0.4401 15 6 9.6087 -1.9088 0.6060 16 6 10.2779 -3.1222 0.6230 17 9 11.6189 -3.1498 0.7850 18 6 9.5764 -4.3053 0.4745 19 6 8.1994 -4.2787 0.3085 20 8 7.5080 -5.4386 0.1687 21 6 8.2291 -6.5740 0.0810 22 1 9.3016 -6.5436 0.2052 23 6 7.5942 -7.7811 -0.1685 24 7 8.2980 -8.8892 -0.2545 25 14 5.7393 -7.8337 -0.3839 26 1 5.4020 -7.6441 -1.8176 27 1 5.2247 -9.1486 0.0761 28 1 5.1169 -6.7502 0.4186 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6961 -0.2349 2.0385 33 1 1.7503 -1.6647 1.1910 34 1 1.7517 -0.1583 -2.1369 35 1 1.6056 -1.7198 -1.2951 36 1 4.6367 -0.0449 -2.7705 37 1 3.7667 1.1640 -1.7959 38 1 5.2205 0.3724 -1.1416 39 1 5.5894 -3.7379 0.4808 40 1 7.7193 -0.9266 0.4269 41 1 10.1604 -0.9878 0.7227 42 1 10.1007 -5.2495 0.4886 43 1 7.8537 -9.7337 -0.4287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861542561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -114.746605 kcal Electronic energy + Delta-G solvation = -29786.860207 eV Core-core repulsion = 25361.514330 eV Total energy + Delta-G solvation = -4425.345877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.87246 -42.21071 -41.04698 -39.76727 -38.17769 -37.80529 -36.14606 -35.15435 -34.50830 -31.32742 -30.43910 -30.05376 -28.43989 -27.73789 -27.31657 -25.15076 -23.79831 -22.97837 -21.78527 -20.88150 -20.18923 -19.71394 -18.88602 -18.48379 -17.79116 -17.42718 -17.21660 -16.97252 -16.69988 -16.49523 -16.34319 -15.91778 -15.70073 -15.65541 -15.41807 -15.20914 -14.88040 -14.62189 -14.29574 -14.09138 -13.95352 -13.87674 -13.69844 -13.64800 -13.35758 -13.16817 -13.00080 -12.70393 -12.59989 -12.39033 -12.21274 -12.18202 -11.95024 -11.67991 -11.27301 -10.97650 -10.42282 -9.73280 -9.66937 -9.51169 -8.91681 -8.55823 -6.29006 -0.08765 0.36409 0.55868 1.26965 1.31967 1.33519 1.49647 2.13386 2.22658 2.43651 2.57296 2.75257 2.97892 3.25956 3.33529 3.68124 3.85260 3.89784 4.12443 4.13655 4.20501 4.27155 4.43349 4.47498 4.49670 4.66105 4.74861 4.82521 4.87581 5.03168 5.06031 5.10732 5.13257 5.21650 5.25917 5.32633 5.43421 5.55630 5.76346 5.92821 6.03785 6.20282 6.32891 6.59625 6.65713 6.76751 6.94568 7.40250 8.54935 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.003837 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.930456 B = 7296.381675 C = 9495.238386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.074 3.926 3 H 0.089 0.911 4 N -0.855 5.855 5 C 0.112 3.888 6 N -0.567 5.567 7 C 0.069 3.931 8 C 0.520 3.480 9 O -0.538 6.538 10 C 0.503 3.497 11 O -0.512 6.512 12 N -0.628 5.628 13 C 0.062 3.938 14 C -0.042 4.042 15 C -0.189 4.189 16 C 0.126 3.874 17 F -0.143 7.143 18 C -0.256 4.256 19 C 0.143 3.857 20 O -0.224 6.224 21 C -0.401 4.401 22 H 0.086 0.914 23 C 0.021 3.979 24 N -0.914 5.914 25 Si 0.960 3.040 26 H -0.270 1.270 27 H -0.267 1.267 28 H -0.254 1.254 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.344 0.656 33 H 0.341 0.659 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.420 0.580 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.129 0.871 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 21.905 -0.790 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.038 4.038 3 H 0.107 0.893 4 N -0.386 5.386 5 C -0.010 4.010 6 N -0.298 5.298 7 C -0.072 4.072 8 C 0.301 3.699 9 O -0.416 6.416 10 C 0.287 3.713 11 O -0.389 6.389 12 N -0.274 5.274 13 C -0.032 4.032 14 C -0.062 4.062 15 C -0.208 4.208 16 C 0.107 3.893 17 F -0.122 7.122 18 C -0.277 4.277 19 C 0.091 3.909 20 O -0.130 6.130 21 C -0.477 4.477 22 H 0.104 0.896 23 C -0.179 4.179 24 N -0.553 5.553 25 Si 0.782 3.218 26 H -0.196 1.196 27 H -0.191 1.191 28 H -0.178 1.178 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.136 0.864 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.257 0.743 40 H 0.179 0.821 41 H 0.185 0.815 42 H 0.146 0.854 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.661 21.967 -1.250 25.898 hybrid contribution -1.027 -1.530 0.348 1.875 sum -14.688 20.436 -0.902 25.183 Atomic orbital electron populations 1.22498 0.95686 1.02154 1.03424 1.21854 0.93256 0.98518 0.90218 0.89250 1.58847 1.67976 1.07192 1.04547 1.21963 0.77567 1.02279 0.99182 1.47476 1.07788 1.19803 1.54779 1.22379 0.96060 0.89524 0.99281 1.19520 0.87231 0.83421 0.79690 1.90703 1.64129 1.39827 1.46931 1.20492 0.90010 0.82072 0.78732 1.90657 1.64807 1.38969 1.44444 1.42928 1.05539 1.25129 1.53777 1.17072 0.83084 0.91323 1.11726 1.20795 0.93144 0.96509 0.95750 1.20948 0.94278 0.96713 1.08875 1.17528 0.76736 0.94149 1.00923 1.91446 1.30338 1.97462 1.92963 1.20982 0.94138 0.98923 1.13648 1.18859 0.90068 0.85890 0.96112 1.83485 1.35208 1.12496 1.81807 1.20678 0.92952 0.82970 1.51084 0.89646 1.25179 1.04441 0.93158 0.95136 1.69710 1.38503 0.99327 1.47802 0.85371 0.78276 0.78737 0.79411 1.19568 1.19122 1.17801 0.91828 0.90470 0.93166 0.84217 0.84515 0.86410 0.91060 0.92247 0.88490 0.89372 0.74260 0.82056 0.81461 0.85354 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.48 71.98 0.68 -0.98 16 2 C 0.07 0.95 3.67 44.91 0.16 1.11 16 3 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 4 N -0.85 -14.99 7.97 -168.67 -1.34 -16.34 16 5 C 0.11 1.68 5.11 86.38 0.44 2.12 16 6 N -0.57 -11.66 2.78 -848.53 -2.35 -14.01 16 7 C 0.07 1.14 9.43 127.77 1.21 2.35 16 8 C 0.52 14.76 7.06 87.23 0.62 15.38 16 9 O -0.54 -17.43 14.49 -3.30 -0.05 -17.47 16 10 C 0.50 15.91 7.50 87.23 0.65 16.57 16 11 O -0.51 -15.86 10.85 -3.38 -0.04 -15.90 16 12 N -0.63 -22.37 5.19 -304.42 -1.58 -23.96 16 13 C 0.06 2.38 6.30 38.32 0.24 2.62 16 14 C -0.04 -1.35 8.65 22.38 0.19 -1.15 16 15 C -0.19 -5.79 10.02 22.33 0.22 -5.57 16 16 C 0.13 4.68 7.30 22.38 0.16 4.84 16 17 F -0.14 -5.15 17.26 44.97 0.78 -4.37 16 18 C -0.26 -11.21 9.14 22.41 0.20 -11.01 16 19 C 0.14 6.44 6.67 22.71 0.15 6.59 16 20 O -0.22 -11.45 8.11 -22.42 -0.18 -11.64 16 21 C -0.40 -22.75 9.95 67.92 0.68 -22.07 16 22 H 0.09 5.10 5.44 -2.91 -0.02 5.08 16 23 C 0.02 1.18 5.49 84.83 0.47 1.65 16 24 N -0.91 -53.42 13.96 21.61 0.30 -53.12 16 25 Si 0.96 44.38 28.62 68.60 1.96 46.35 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 28 H -0.25 -11.53 7.11 99.48 0.71 -10.83 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.34 4.90 9.04 -89.70 -0.81 4.09 16 33 H 0.34 7.11 7.84 -89.70 -0.70 6.40 16 34 H 0.12 1.02 8.07 -2.39 -0.02 1.00 16 35 H 0.07 1.32 7.41 -2.39 -0.02 1.31 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 0.94 8.02 -2.39 -0.02 0.92 16 38 H 0.09 1.79 5.54 -2.39 -0.01 1.78 16 39 H 0.42 15.51 8.00 -92.71 -0.74 14.77 16 40 H 0.16 4.53 6.40 -2.91 -0.02 4.51 16 41 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.13 6.16 5.64 -2.91 -0.02 6.14 16 43 H 0.29 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -65.72 364.79 2.43 -63.29 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -1.15 Total: 34.73 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 6.08 Total: 12.44 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -4.98 Total: -107.43 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.27 Total: -45.01 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.78 Total: -4.37 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.96 Total: 46.35 kcal Total: -65.72 2.43 -63.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861542561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.460 kcal (2) G-P(sol) polarization free energy of solvation -65.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds