Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46956 * 2 1 4 4 N 1.46899 * 109.47270 * 239.99786 * 2 1 3 5 5 C 1.53004 * 109.47034 * 119.99709 * 2 1 3 6 6 N 1.46494 * 109.47207 * 175.00052 * 5 2 1 7 7 C 1.46500 * 120.00496 * 270.00223 * 6 5 2 8 8 C 1.34780 * 120.00213 * 89.99976 * 6 5 2 9 9 O 1.21370 * 119.99648 * 0.83704 * 8 6 5 10 10 C 1.49301 * 120.00281 * 180.84019 * 8 6 5 11 11 O 1.21399 * 120.00029 * 3.23138 * 10 8 6 12 12 N 1.34780 * 120.00208 * 183.23079 * 10 8 6 13 13 C 1.39807 * 120.00265 * 176.98025 * 12 10 8 14 14 C 1.38792 * 120.08437 * 27.32156 * 13 12 10 15 15 C 1.38150 * 120.01771 * 180.25300 * 14 13 12 16 16 C 1.38587 * 120.18537 * 0.04386 * 15 14 13 17 17 F 1.35098 * 119.91502 * 179.97438 * 16 15 14 18 18 C 1.38339 * 120.16836 * 359.95125 * 16 15 14 19 19 C 1.38737 * 119.98392 * 0.02708 * 18 16 15 20 20 O 1.35760 * 120.09298 * 180.02562 * 19 18 16 21 21 C 1.34795 * 116.99812 * 6.54889 * 20 19 18 22 22 H 1.08003 * 120.00066 * 5.98341 * 21 20 19 23 23 C 1.38659 * 119.99858 * 185.99300 * 21 20 19 24 24 N 1.31558 * 119.99824 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00052 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.47082 * 89.99462 * 25 23 21 27 27 H 1.48497 * 109.47318 * 209.99224 * 25 23 21 28 28 H 1.48496 * 109.47282 * 329.99693 * 25 23 21 29 29 H 1.08996 * 109.47477 * 300.00481 * 1 2 3 30 30 H 1.08996 * 109.46742 * 60.00758 * 1 2 3 31 31 H 1.09004 * 109.46990 * 179.97438 * 1 2 3 32 32 H 1.00905 * 110.99934 * 176.05080 * 4 2 1 33 33 H 1.00899 * 110.99794 * 300.00038 * 4 2 1 34 34 H 1.08998 * 109.47024 * 55.00231 * 5 2 1 35 35 H 1.08998 * 109.46842 * 295.00124 * 5 2 1 36 36 H 1.08998 * 109.47129 * 263.50710 * 7 6 5 37 37 H 1.08998 * 109.46924 * 23.49942 * 7 6 5 38 38 H 1.08991 * 109.47659 * 143.50220 * 7 6 5 39 39 H 0.97011 * 119.99738 * 356.97966 * 12 10 8 40 40 H 1.08006 * 119.99617 * 0.25125 * 14 13 12 41 41 H 1.07991 * 119.90703 * 180.02562 * 15 14 13 42 42 H 1.07999 * 120.00926 * 180.02562 * 18 16 15 43 43 H 0.97003 * 119.99573 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 7 3.5000 -0.8263 1.1907 7 6 4.1259 -1.9919 0.5614 8 6 4.2676 0.1493 1.7157 9 8 3.7492 1.1076 2.2505 10 6 5.7554 0.0512 1.6393 11 8 6.2732 -0.8773 1.0532 12 7 6.5236 0.9935 2.2210 13 6 7.9160 0.8686 2.2041 14 6 8.5393 0.1681 1.1808 15 6 9.9149 0.0412 1.1683 16 6 10.6765 0.6110 2.1762 17 9 12.0213 0.4831 2.1588 18 6 10.0633 1.3110 3.1998 19 6 8.6823 1.4432 3.2191 20 8 8.0782 2.1301 4.2222 21 6 8.8810 2.7736 5.0931 22 1 9.9465 2.8090 4.9206 23 6 8.3387 3.3898 6.2106 24 7 7.0407 3.3469 6.4206 25 14 9.4511 4.2810 7.4179 26 1 9.5888 5.7018 7.0082 27 1 8.8600 4.2133 8.7785 28 1 10.7889 3.6365 7.4268 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.0263 -0.6502 -1.2558 33 1 1.6962 -1.6480 -1.2226 34 1 1.6054 -1.7197 1.2952 35 1 1.7516 -0.1582 2.1370 36 1 4.3874 -2.7218 1.3275 37 1 3.4285 -2.4413 -0.1456 38 1 5.0273 -1.6799 0.0341 39 1 6.1104 1.7584 2.6515 40 1 7.9489 -0.2779 0.3941 41 1 10.3981 -0.5039 0.3710 42 1 10.6593 1.7544 3.9837 43 1 6.6613 3.7783 7.2021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861542562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -112.968403 kcal Electronic energy + Delta-G solvation = -29549.556676 eV Core-core repulsion = 25124.287908 eV Total energy + Delta-G solvation = -4425.268768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.85521 -42.35205 -41.06639 -39.85861 -38.23316 -38.05436 -36.08962 -35.04708 -34.35557 -31.22229 -30.50618 -30.28552 -28.47833 -27.83894 -27.39882 -25.07017 -23.95680 -22.93312 -21.97896 -20.95923 -20.22314 -19.61168 -18.87804 -18.57513 -17.61705 -17.54983 -17.32421 -17.03305 -16.75988 -16.66050 -16.35713 -16.00270 -15.76082 -15.55342 -15.39434 -15.32896 -15.14899 -14.85227 -14.53874 -14.15315 -14.04255 -13.86252 -13.54832 -13.41397 -13.10399 -12.99950 -12.85966 -12.70537 -12.64386 -12.44107 -12.27530 -12.15603 -11.92894 -11.72921 -11.37474 -10.86664 -10.53874 -10.24900 -9.62239 -9.41896 -8.85265 -8.53925 -6.21915 -0.15001 0.39730 0.49244 1.12509 1.35052 1.42731 1.51387 1.95802 2.10891 2.31744 2.62434 2.99138 3.07767 3.16790 3.40765 3.58067 3.82291 3.90571 4.02416 4.14297 4.15752 4.27267 4.32442 4.45053 4.53976 4.58017 4.72208 4.80569 4.91305 4.94911 5.02760 5.12109 5.18411 5.19817 5.23168 5.29621 5.33179 5.42369 5.76508 5.88426 5.96210 6.10983 6.16731 6.50359 6.56761 6.76625 6.89609 7.57207 8.66399 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.003278 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.515858 B = 8539.360321 C =10733.977728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.077 3.923 3 H 0.056 0.944 4 N -0.842 5.842 5 C 0.074 3.926 6 N -0.576 5.576 7 C 0.055 3.945 8 C 0.505 3.495 9 O -0.544 6.544 10 C 0.504 3.496 11 O -0.506 6.506 12 N -0.620 5.620 13 C 0.047 3.953 14 C -0.050 4.050 15 C -0.201 4.201 16 C 0.129 3.871 17 F -0.143 7.143 18 C -0.264 4.264 19 C 0.132 3.868 20 O -0.206 6.206 21 C -0.417 4.417 22 H 0.103 0.897 23 C -0.011 4.011 24 N -0.906 5.906 25 Si 1.015 2.985 26 H -0.263 1.263 27 H -0.272 1.272 28 H -0.254 1.254 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.342 0.658 33 H 0.350 0.650 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.420 0.580 40 H 0.173 0.827 41 H 0.165 0.835 42 H 0.136 0.864 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 -10.689 -12.865 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.036 4.036 3 H 0.074 0.926 4 N -0.373 5.373 5 C -0.050 4.050 6 N -0.309 5.309 7 C -0.086 4.086 8 C 0.287 3.713 9 O -0.421 6.421 10 C 0.287 3.713 11 O -0.384 6.384 12 N -0.264 5.264 13 C -0.047 4.047 14 C -0.070 4.070 15 C -0.220 4.220 16 C 0.109 3.891 17 F -0.121 7.121 18 C -0.284 4.284 19 C 0.079 3.921 20 O -0.111 6.111 21 C -0.492 4.492 22 H 0.120 0.880 23 C -0.211 4.211 24 N -0.543 5.543 25 Si 0.834 3.166 26 H -0.188 1.188 27 H -0.196 1.196 28 H -0.178 1.178 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.257 0.743 40 H 0.190 0.810 41 H 0.183 0.817 42 H 0.154 0.846 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.174 -10.219 -13.188 18.579 hybrid contribution 1.069 0.436 2.017 2.324 sum -7.105 -9.784 -11.172 16.462 Atomic orbital electron populations 1.21690 0.92007 1.03251 1.02471 1.21723 0.97015 0.97451 0.87437 0.92599 1.58920 1.16686 1.21923 1.39805 1.22724 0.77408 1.03885 1.00968 1.47770 1.07033 1.20658 1.55420 1.22704 1.00766 0.86286 0.98879 1.19938 0.87469 0.83845 0.80056 1.90811 1.74709 1.32803 1.43808 1.20213 0.88444 0.82152 0.80453 1.90542 1.74251 1.32200 1.41431 1.42930 1.04608 1.24959 1.53861 1.17237 0.81718 1.08829 0.96939 1.21187 0.93948 0.95973 0.95882 1.20953 0.93194 1.06920 1.00961 1.17533 0.76651 0.98724 0.96172 1.91440 1.29965 1.94283 1.96452 1.20916 0.94213 1.10032 1.03284 1.19181 0.91193 0.93033 0.88727 1.83928 1.35667 1.57148 1.34320 1.21780 0.91903 1.32004 1.03518 0.87964 1.26494 0.98147 0.97890 0.98584 1.70159 1.12552 1.42634 1.28905 0.84635 0.77453 0.78295 0.76212 1.18763 1.19642 1.17816 0.91834 0.91813 0.90750 0.84481 0.83551 0.86679 0.90689 0.91995 0.88377 0.87601 0.74342 0.81031 0.81742 0.84608 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.49 71.98 0.68 -1.09 16 2 C 0.08 1.30 3.70 44.92 0.17 1.47 16 3 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 4 N -0.84 -12.03 8.55 -168.68 -1.44 -13.47 16 5 C 0.07 1.30 5.09 86.38 0.44 1.74 16 6 N -0.58 -12.51 2.50 -848.55 -2.12 -14.63 16 7 C 0.05 0.87 8.35 127.77 1.07 1.94 16 8 C 0.50 15.63 7.74 87.22 0.67 16.31 16 9 O -0.54 -20.52 16.05 -3.31 -0.05 -20.58 16 10 C 0.50 16.70 7.67 87.22 0.67 17.37 16 11 O -0.51 -15.39 10.12 -3.40 -0.03 -15.43 16 12 N -0.62 -24.07 5.25 -304.43 -1.60 -25.67 16 13 C 0.05 1.92 6.44 38.32 0.25 2.16 16 14 C -0.05 -1.68 8.75 22.38 0.20 -1.49 16 15 C -0.20 -6.31 10.02 22.33 0.22 -6.09 16 16 C 0.13 4.71 7.29 22.38 0.16 4.87 16 17 F -0.14 -4.92 17.26 44.97 0.78 -4.15 16 18 C -0.26 -11.29 9.10 22.41 0.20 -11.08 16 19 C 0.13 6.19 6.66 22.71 0.15 6.34 16 20 O -0.21 -11.38 9.21 -22.49 -0.21 -11.58 16 21 C -0.42 -22.89 9.43 67.92 0.64 -22.25 16 22 H 0.10 5.21 5.33 -2.91 -0.02 5.19 16 23 C -0.01 -0.62 5.49 84.83 0.47 -0.15 16 24 N -0.91 -53.00 13.67 21.61 0.30 -52.70 16 25 Si 1.01 41.35 29.55 68.60 2.03 43.38 16 26 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 27 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 28 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.34 5.25 7.17 -89.69 -0.64 4.61 16 33 H 0.35 3.31 8.48 -89.69 -0.76 2.55 16 34 H 0.12 1.28 8.07 -2.39 -0.02 1.27 16 35 H 0.07 1.65 7.41 -2.39 -0.02 1.63 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 0.88 6.61 -2.39 -0.02 0.86 16 38 H 0.11 1.98 5.31 -3.10 -0.02 1.97 16 39 H 0.42 17.82 7.87 -92.70 -0.73 17.09 16 40 H 0.17 5.10 5.69 -2.91 -0.02 5.09 16 41 H 0.17 3.95 8.06 -2.92 -0.02 3.93 16 42 H 0.14 5.95 5.74 -2.91 -0.02 5.93 16 43 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -67.12 363.46 2.61 -64.51 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: -1.02 Total: 40.28 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 5.99 Total: 10.04 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.87 Total: -106.48 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -0.29 Total: -47.59 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.78 Total: -4.15 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -67.12 2.61 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861542562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.459 kcal (2) G-P(sol) polarization free energy of solvation -67.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds