Wall clock time and date at job start Sat Apr 11 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99578 * 4 2 1 6 6 C 1.37879 * 119.99967 * 60.00074 * 4 2 1 7 7 N 1.31518 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46773 * 90.00022 * 8 6 4 10 10 H 1.48503 * 109.47070 * 209.99659 * 8 6 4 11 11 H 1.48490 * 109.47290 * 330.00043 * 8 6 4 12 12 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 13 13 C 1.46499 * 120.00062 * 60.00143 * 12 2 1 14 14 S 1.65606 * 119.99935 * 239.99645 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.46500 * 120.00079 * 64.99962 * 17 14 12 19 19 H 1.08994 * 109.47331 * 335.00017 * 18 17 14 20 20 C 1.50700 * 109.47110 * 214.99843 * 18 17 14 21 21 C 1.38232 * 119.61711 * 4.72753 * 20 18 17 22 22 C 1.38631 * 119.15946 * 179.75041 * 21 20 18 23 23 C 1.38676 * 118.41658 * 0.51704 * 22 21 20 24 24 C 1.38175 * 119.16772 * 359.72630 * 23 22 21 25 25 N 1.31848 * 119.61763 * 185.00342 * 20 18 17 26 26 C 1.53002 * 109.47024 * 94.99721 * 18 17 14 27 27 C 1.52990 * 117.50005 * 248.74581 * 26 18 17 28 28 C 1.52997 * 117.49974 * 180.08315 * 26 18 17 29 29 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 30 30 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 31 31 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 32 32 H 0.97008 * 119.99487 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 34 34 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 35 35 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 36 36 H 0.97004 * 119.99793 * 244.99782 * 17 14 12 37 37 H 1.07993 * 120.41923 * 359.97438 * 21 20 18 38 38 H 1.07996 * 120.79138 * 180.26261 * 22 21 20 39 39 H 1.08003 * 120.41045 * 179.71173 * 23 22 21 40 40 H 1.07995 * 119.61927 * 180.02562 * 24 23 22 41 41 H 1.09004 * 115.54517 * 34.41846 * 26 18 17 42 42 H 1.08996 * 117.50187 * 0.02562 * 27 26 18 43 43 H 1.09006 * 117.49915 * 145.02610 * 27 26 18 44 44 H 1.08997 * 117.50294 * 214.98510 * 28 26 18 45 45 H 1.09003 * 117.49589 * 359.97438 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 1.3446 -2.1611 -4.4126 10 1 2.4871 -0.1397 -5.1121 11 1 3.6307 -1.7562 -3.7122 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1140 2.2862 15 8 2.6904 1.4970 2.1194 16 8 2.8229 -0.5649 3.5257 17 7 4.5438 -0.1044 1.8179 18 6 5.0139 0.4530 0.5472 19 1 4.1700 0.5698 -0.1327 20 6 6.0275 -0.4788 -0.0657 21 6 6.2915 -1.6938 0.5384 22 6 7.2218 -2.5458 -0.0364 23 6 7.8626 -2.1374 -1.1964 24 6 7.5506 -0.9061 -1.7403 25 7 6.6561 -0.1233 -1.1688 26 6 5.6604 1.8171 0.7967 27 6 4.9323 3.0522 0.2628 28 6 6.2163 2.5676 -0.4151 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7080 1.1612 -3.4843 33 1 2.4158 -2.7378 0.9713 34 1 0.6905 -2.3003 0.9844 35 1 1.6239 -2.2855 2.5000 36 1 5.1541 -0.6013 2.3849 37 1 5.7769 -1.9772 1.4445 38 1 7.4453 -3.5030 0.4110 39 1 8.5964 -2.7738 -1.6687 40 1 8.0449 -0.5809 -2.6437 41 1 6.1966 1.9175 1.7404 42 1 3.9925 2.8931 -0.2658 43 1 4.9898 3.9655 0.8551 44 1 7.1180 3.1623 -0.2686 45 1 6.1219 2.0894 -1.3900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921429394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:38 Heat of formation + Delta-G solvation = -1.930440 kcal Electronic energy + Delta-G solvation = -29648.513118 eV Core-core repulsion = 25794.272493 eV Total energy + Delta-G solvation = -3854.240625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25595 -37.46510 -36.59844 -36.17089 -35.22831 -34.32695 -32.61869 -32.35358 -30.69515 -29.08258 -26.41262 -25.60132 -25.15398 -23.39976 -22.45884 -21.72760 -20.75377 -20.21788 -18.97905 -17.49417 -17.10530 -16.65414 -16.41819 -15.98250 -15.58109 -15.43921 -14.99809 -14.58920 -14.37469 -14.07194 -13.54947 -13.46119 -13.20418 -13.00090 -12.83965 -12.50146 -12.00052 -11.87676 -11.80368 -11.58962 -11.47422 -11.39770 -11.36091 -11.15941 -10.99824 -10.91434 -10.82937 -10.47248 -10.29022 -10.10526 -10.01215 -9.82249 -9.69353 -9.50429 -9.18661 -9.01937 -8.73176 -8.50452 -7.98936 -6.11659 -4.20345 1.21523 1.24567 1.41260 3.23444 3.31407 3.33119 3.43723 3.92339 4.04690 4.20777 4.34315 4.57455 4.83189 4.91495 5.02018 5.16457 5.18230 5.19382 5.27123 5.37595 5.44704 5.62678 5.65771 5.71123 5.76505 5.85839 6.13318 6.16270 6.18123 6.24561 6.27320 6.32597 6.49409 6.61859 6.69662 6.75158 6.83564 6.86061 6.86511 7.08989 7.17468 7.49123 7.61396 7.75413 8.01962 8.16637 8.23291 8.83406 9.47112 10.92839 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008368 B = 0.007127 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.248769 B = 3927.595373 C = 5210.395783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.060 0.940 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.070 3.930 7 N -0.883 5.883 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.990 5.990 13 C 0.100 3.900 14 S 2.780 3.220 15 O -0.969 6.969 16 O -1.000 7.000 17 N -1.125 6.125 18 C 0.234 3.766 19 H 0.131 0.869 20 C 0.150 3.850 21 C -0.169 4.169 22 C -0.074 4.074 23 C -0.186 4.186 24 C 0.103 3.897 25 N -0.466 5.466 26 C -0.166 4.166 27 C -0.163 4.163 28 C -0.164 4.164 29 H 0.013 0.987 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.406 0.594 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.553 -4.131 4.312 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.077 0.923 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.833 5.833 13 C -0.046 4.046 14 S 2.789 3.211 15 O -0.952 6.952 16 O -0.984 6.984 17 N -0.882 5.882 18 C 0.126 3.874 19 H 0.148 0.852 20 C 0.011 3.989 21 C -0.189 4.189 22 C -0.100 4.100 23 C -0.206 4.206 24 C -0.054 4.054 25 N -0.175 5.175 26 C -0.186 4.186 27 C -0.200 4.200 28 C -0.201 4.201 29 H 0.032 0.968 30 H 0.112 0.888 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.240 0.760 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.837 -2.590 4.456 12.000 hybrid contribution 0.966 -2.006 -0.660 2.322 sum 11.803 -4.596 3.796 13.223 Atomic orbital electron populations 1.22063 0.98009 0.99617 1.00852 1.18770 0.92003 0.92634 0.80240 0.92266 1.21334 1.32035 1.13136 0.90062 0.92120 1.24868 0.94816 0.94851 0.98823 1.69872 1.35971 1.22421 1.23834 0.86602 0.79186 0.79443 0.82840 1.20793 1.21080 1.19992 1.57695 1.64288 1.21486 1.39859 1.21242 1.01828 0.81741 0.99787 1.01918 0.72511 0.73952 0.72727 1.93608 1.83541 1.31804 1.86268 1.93537 1.85867 1.76331 1.42709 1.56310 1.30930 1.70522 1.30461 1.19065 0.96008 0.88499 0.83861 0.85185 1.21202 0.94059 0.92739 0.90925 1.21871 0.99541 0.95369 1.02150 1.21512 0.94513 0.99026 0.94924 1.22062 1.02259 0.98498 0.97747 1.22733 0.93648 0.90597 0.98465 1.67400 1.06729 1.34347 1.08985 1.22459 1.05220 0.92118 0.98814 1.23027 0.97133 0.96678 1.03175 1.23033 0.96772 1.02325 0.98008 0.96814 0.88834 0.94849 0.92607 0.93948 0.90593 0.92131 0.76003 0.84838 0.85158 0.85254 0.82943 0.88249 0.87711 0.89330 0.89916 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.95 37.16 0.33 -3.05 16 2 C 0.27 6.23 1.92 -69.08 -0.13 6.10 16 3 H 0.06 1.53 6.74 -51.93 -0.35 1.18 16 4 C -0.53 -13.01 7.71 -34.44 -0.27 -13.28 16 5 H 0.06 1.50 7.65 -52.49 -0.40 1.10 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -23.57 11.32 55.43 0.63 -22.94 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.99 -19.84 3.12 -115.85 -0.36 -20.20 16 13 C 0.10 1.75 9.90 59.85 0.59 2.34 16 14 S 2.78 52.94 6.05 -107.50 -0.65 52.29 16 15 O -0.97 -21.13 16.46 -57.18 -0.94 -22.07 16 16 O -1.00 -19.90 16.74 -57.18 -0.96 -20.86 16 17 N -1.13 -17.82 4.93 -5.88 -0.03 -17.85 16 18 C 0.23 4.00 2.93 -69.08 -0.20 3.80 16 19 H 0.13 2.67 6.15 -51.93 -0.32 2.35 16 20 C 0.15 2.41 6.17 -82.59 -0.51 1.90 16 21 C -0.17 -2.32 9.20 -39.44 -0.36 -2.68 16 22 C -0.07 -0.86 10.18 -39.27 -0.40 -1.26 16 23 C -0.19 -2.12 10.11 -39.44 -0.40 -2.52 16 24 C 0.10 1.36 11.18 -17.55 -0.20 1.16 16 25 N -0.47 -7.46 7.81 -9.47 -0.07 -7.53 16 26 C -0.17 -2.67 5.44 -90.63 -0.49 -3.16 16 27 C -0.16 -2.73 10.18 -26.70 -0.27 -3.00 16 28 C -0.16 -2.49 9.28 -26.70 -0.25 -2.74 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 31 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 32 H 0.26 6.78 8.31 -40.82 -0.34 6.45 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.32 6.43 -51.93 -0.33 0.99 16 35 H 0.06 0.96 7.02 -51.93 -0.36 0.60 16 36 H 0.41 5.24 7.00 -34.47 -0.24 5.00 16 37 H 0.13 1.60 6.13 -52.49 -0.32 1.28 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.10 2.01 8.05 -51.93 -0.42 1.59 16 43 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.11 1.90 6.75 -51.93 -0.35 1.55 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -30.47 373.59 -10.71 -41.18 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.28 Total: 11.64 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -2.65 Total: -14.69 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: 0.16 Total: -68.52 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -1.90 Total: -42.94 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 52.94 SS G_CDS: -0.65 Total: 52.29 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.47 -10.71 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921429394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.245 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds