Wall clock time and date at job start Sat Apr 11 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99578 * 4 2 1 6 6 C 1.37879 * 119.99967 * 60.00074 * 4 2 1 7 7 N 1.31518 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46773 * 90.00022 * 8 6 4 10 10 H 1.48503 * 109.47070 * 209.99659 * 8 6 4 11 11 H 1.48490 * 109.47290 * 330.00043 * 8 6 4 12 12 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 13 13 C 1.46499 * 120.00062 * 60.00143 * 12 2 1 14 14 S 1.65606 * 119.99935 * 239.99645 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.46500 * 120.00079 * 64.99962 * 17 14 12 19 19 H 1.08994 * 109.47331 * 335.00017 * 18 17 14 20 20 C 1.50700 * 109.47110 * 214.99843 * 18 17 14 21 21 C 1.38232 * 119.61711 * 4.72753 * 20 18 17 22 22 C 1.38631 * 119.15946 * 179.75041 * 21 20 18 23 23 C 1.38676 * 118.41658 * 0.51704 * 22 21 20 24 24 C 1.38175 * 119.16772 * 359.72630 * 23 22 21 25 25 N 1.31848 * 119.61763 * 185.00342 * 20 18 17 26 26 C 1.53002 * 109.47024 * 94.99721 * 18 17 14 27 27 C 1.52990 * 117.50005 * 248.74581 * 26 18 17 28 28 C 1.52997 * 117.49974 * 180.08315 * 26 18 17 29 29 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 30 30 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 31 31 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 32 32 H 0.97008 * 119.99487 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 34 34 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 35 35 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 36 36 H 0.97004 * 119.99793 * 244.99782 * 17 14 12 37 37 H 1.07993 * 120.41923 * 359.97438 * 21 20 18 38 38 H 1.07996 * 120.79138 * 180.26261 * 22 21 20 39 39 H 1.08003 * 120.41045 * 179.71173 * 23 22 21 40 40 H 1.07995 * 119.61927 * 180.02562 * 24 23 22 41 41 H 1.09004 * 115.54517 * 34.41846 * 26 18 17 42 42 H 1.08996 * 117.50187 * 0.02562 * 27 26 18 43 43 H 1.09006 * 117.49915 * 145.02610 * 27 26 18 44 44 H 1.08997 * 117.50294 * 214.98510 * 28 26 18 45 45 H 1.09003 * 117.49589 * 359.97438 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 1.3446 -2.1611 -4.4126 10 1 2.4871 -0.1397 -5.1121 11 1 3.6307 -1.7562 -3.7122 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1140 2.2862 15 8 2.6904 1.4970 2.1194 16 8 2.8229 -0.5649 3.5257 17 7 4.5438 -0.1044 1.8179 18 6 5.0139 0.4530 0.5472 19 1 4.1700 0.5698 -0.1327 20 6 6.0275 -0.4788 -0.0657 21 6 6.2915 -1.6938 0.5384 22 6 7.2218 -2.5458 -0.0364 23 6 7.8626 -2.1374 -1.1964 24 6 7.5506 -0.9061 -1.7403 25 7 6.6561 -0.1233 -1.1688 26 6 5.6604 1.8171 0.7967 27 6 4.9323 3.0522 0.2628 28 6 6.2163 2.5676 -0.4151 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7080 1.1612 -3.4843 33 1 2.4158 -2.7378 0.9713 34 1 0.6905 -2.3003 0.9844 35 1 1.6239 -2.2855 2.5000 36 1 5.1541 -0.6013 2.3849 37 1 5.7769 -1.9772 1.4445 38 1 7.4453 -3.5030 0.4110 39 1 8.5964 -2.7738 -1.6687 40 1 8.0449 -0.5809 -2.6437 41 1 6.1966 1.9175 1.7404 42 1 3.9925 2.8931 -0.2658 43 1 4.9898 3.9655 0.8551 44 1 7.1180 3.1623 -0.2686 45 1 6.1219 2.0894 -1.3900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921429394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:37 Heat of formation + Delta-G solvation = -21.696065 kcal Electronic energy + Delta-G solvation = -29649.370219 eV Core-core repulsion = 25794.272493 eV Total energy + Delta-G solvation = -3855.097727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30932 -38.75527 -38.16736 -37.88806 -36.86807 -35.62681 -34.50274 -33.33536 -31.77036 -30.89839 -27.65756 -27.29537 -26.96426 -24.38795 -23.55861 -23.01417 -22.56238 -21.48833 -20.46525 -18.89779 -18.59011 -18.29974 -18.04251 -17.14583 -16.95687 -16.63219 -16.43813 -16.05781 -15.73054 -15.31779 -15.20511 -14.82370 -14.60652 -14.51085 -13.98383 -13.74224 -13.62462 -13.41827 -13.29261 -13.19203 -13.07697 -12.97387 -12.79702 -12.75483 -12.60829 -12.58079 -12.24918 -12.22512 -12.17765 -11.86894 -11.33408 -11.17440 -11.04362 -10.71876 -10.66457 -10.48934 -10.09596 -9.79754 -9.66495 -8.08875 -6.21843 -0.31974 0.23694 0.46128 1.39790 1.42995 1.50081 1.93862 2.43339 2.58117 2.85511 2.97499 3.20081 3.34384 3.60711 3.76051 3.92260 4.04634 4.05897 4.15694 4.19560 4.26130 4.31696 4.39507 4.49064 4.73188 4.75488 4.81366 4.85657 4.87459 4.93514 4.97964 5.04827 5.11111 5.17073 5.19015 5.28453 5.32806 5.39705 5.49119 5.62149 5.71540 5.85373 5.87370 6.03458 6.15129 6.30689 6.86310 7.14792 7.47489 8.95190 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008368 B = 0.007127 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.248769 B = 3927.595373 C = 5210.395783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.275 3.725 3 H 0.028 0.972 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.026 3.974 7 N -0.911 5.911 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.996 5.996 13 C 0.095 3.905 14 S 2.796 3.204 15 O -1.000 7.000 16 O -1.005 7.005 17 N -1.108 6.108 18 C 0.238 3.762 19 H 0.089 0.911 20 C 0.122 3.878 21 C -0.178 4.178 22 C -0.073 4.073 23 C -0.175 4.175 24 C 0.085 3.915 25 N -0.496 5.496 26 C -0.167 4.167 27 C -0.180 4.180 28 C -0.144 4.144 29 H 0.020 0.980 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.262 0.738 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.422 0.578 37 H 0.146 0.854 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.175 0.825 41 H 0.116 0.884 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.870 -6.446 4.624 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.175 4.175 7 N -0.550 5.550 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.838 5.838 13 C -0.051 4.051 14 S 2.805 3.195 15 O -0.984 6.984 16 O -0.989 6.989 17 N -0.869 5.869 18 C 0.129 3.871 19 H 0.107 0.893 20 C -0.017 4.017 21 C -0.198 4.198 22 C -0.099 4.099 23 C -0.194 4.194 24 C -0.072 4.072 25 N -0.206 5.206 26 C -0.187 4.187 27 C -0.217 4.217 28 C -0.182 4.182 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.259 0.741 37 H 0.163 0.837 38 H 0.183 0.817 39 H 0.183 0.817 40 H 0.192 0.808 41 H 0.134 0.866 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.154 -4.936 4.793 14.845 hybrid contribution 0.321 -1.329 -0.745 1.557 sum 13.475 -6.265 4.048 15.402 Atomic orbital electron populations 1.21959 0.97965 1.00077 1.00037 1.18399 0.91933 0.91340 0.81223 0.95423 1.21464 1.31188 1.12671 0.90519 0.92121 1.25501 0.95226 0.95482 1.01242 1.69993 1.37263 1.23684 1.24102 0.85753 0.78648 0.78404 0.79977 1.20193 1.21445 1.19911 1.57588 1.64979 1.22562 1.38716 1.21436 1.02219 0.80313 1.01099 1.01280 0.72873 0.73081 0.72257 1.93572 1.84323 1.33875 1.86614 1.93523 1.86287 1.76253 1.42880 1.55862 1.29999 1.70570 1.30502 1.18818 0.95220 0.89727 0.83288 0.89278 1.21032 0.94987 0.93677 0.91993 1.22069 1.00258 0.94818 1.02672 1.21957 0.93287 0.99862 0.94774 1.22480 1.01897 0.97872 0.97171 1.23238 0.93324 0.91375 0.99274 1.67305 1.07883 1.35942 1.09437 1.22553 1.04925 0.91332 0.99862 1.22946 0.96455 0.98016 1.04305 1.22991 0.96626 1.01530 0.97035 0.96134 0.91142 0.93645 0.92827 0.92587 0.90691 0.90387 0.74074 0.83686 0.81728 0.81681 0.80842 0.86570 0.91291 0.87931 0.87340 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.65 8.95 71.98 0.64 -6.01 16 2 C 0.28 13.22 1.92 44.24 0.09 13.31 16 3 H 0.03 1.52 6.74 -2.39 -0.02 1.50 16 4 C -0.52 -26.03 7.71 25.60 0.20 -25.83 16 5 H 0.06 2.99 7.65 -2.91 -0.02 2.97 16 6 C 0.03 1.35 5.30 84.65 0.45 1.79 16 7 N -0.91 -50.20 11.32 21.45 0.24 -49.96 16 8 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 N -1.00 -39.96 3.12 -520.44 -1.62 -41.59 16 13 C 0.09 3.17 9.90 127.77 1.27 4.43 16 14 S 2.80 106.62 6.05 -56.49 -0.34 106.28 16 15 O -1.00 -45.03 16.46 -128.00 -2.11 -47.14 16 16 O -1.01 -38.84 16.74 -128.00 -2.14 -40.98 16 17 N -1.11 -34.64 4.93 -172.52 -0.85 -35.49 16 18 C 0.24 8.25 2.93 44.25 0.13 8.38 16 19 H 0.09 3.86 6.15 -2.39 -0.01 3.84 16 20 C 0.12 3.81 6.17 42.55 0.26 4.08 16 21 C -0.18 -4.48 9.20 22.36 0.21 -4.27 16 22 C -0.07 -1.43 10.18 22.47 0.23 -1.21 16 23 C -0.17 -3.32 10.11 22.36 0.23 -3.10 16 24 C 0.09 2.05 11.18 84.67 0.95 3.00 16 25 N -0.50 -15.52 7.81 -183.89 -1.44 -16.95 16 26 C -0.17 -5.39 5.44 -10.80 -0.06 -5.45 16 27 C -0.18 -6.29 10.18 30.61 0.31 -5.98 16 28 C -0.14 -4.41 9.28 30.62 0.28 -4.12 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 31 H 0.04 1.98 6.66 -2.39 -0.02 1.96 16 32 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 2.51 6.43 -2.39 -0.02 2.49 16 35 H 0.08 2.33 7.02 -2.38 -0.02 2.31 16 36 H 0.42 10.29 7.00 -96.74 -0.68 9.61 16 37 H 0.15 3.12 6.13 -2.91 -0.02 3.10 16 38 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 41 H 0.12 3.32 8.14 -2.38 -0.02 3.30 16 42 H 0.07 2.89 8.05 -2.39 -0.02 2.88 16 43 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 44 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 45 H 0.10 3.40 6.75 -2.39 -0.02 3.39 16 Total: -1.00 -67.08 373.59 -0.72 -67.80 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: 0.34 Total: 34.72 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 5.18 Total: -20.98 kcal Atomic # 7 Polarization: -140.32 SS G_CDS: -3.67 Total: -143.99 kcal Atomic # 8 Polarization: -83.87 SS G_CDS: -4.25 Total: -88.12 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 106.62 SS G_CDS: -0.34 Total: 106.28 kcal Total: -67.08 -0.72 -67.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921429394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.099 kcal (2) G-P(sol) polarization free energy of solvation -67.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds