Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99907 * 2 1 4 4 H 1.09005 * 109.47429 * 29.99417 * 3 2 1 5 5 C 1.53003 * 109.47132 * 269.99716 * 3 2 1 6 6 C 1.50703 * 109.47287 * 149.99572 * 3 2 1 7 7 N 1.28645 * 124.72142 * 225.00155 * 6 3 2 8 8 C 1.33558 * 115.76542 * 180.02562 * 7 6 3 9 9 C 1.47265 * 123.14169 * 180.02562 * 8 7 6 10 10 O 1.21632 * 119.99971 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99940 * 359.97132 * 9 8 7 12 12 C 1.46502 * 119.99737 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47623 * 34.99980 * 12 11 9 14 14 C 1.52999 * 109.47122 * 274.99944 * 12 11 9 15 15 C 1.52995 * 109.46970 * 155.00040 * 12 11 9 16 16 C 1.53948 * 113.74423 * 278.73853 * 15 12 11 17 17 N 1.47810 * 86.03774 * 222.08427 * 16 15 12 18 18 C 1.36933 * 134.45315 * 204.64308 * 17 16 15 19 19 H 1.08006 * 119.99940 * 179.86657 * 18 17 16 20 20 C 1.38813 * 120.00347 * 359.86506 * 18 17 16 21 21 N 1.31617 * 119.99713 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00056 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47296 * 90.00275 * 22 20 18 24 24 H 1.48502 * 109.46931 * 210.00126 * 22 20 18 25 25 H 1.48500 * 109.47276 * 329.99991 * 22 20 18 26 26 C 1.47576 * 91.05124 * 24.54900 * 17 16 15 27 27 C 1.35215 * 113.71995 * 359.97438 * 8 7 6 28 28 S 1.70773 * 124.71600 * 44.99685 * 6 3 2 29 29 H 1.09000 * 109.46722 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47504 * 300.00062 * 1 2 3 31 31 H 1.09002 * 109.47057 * 60.00313 * 1 2 3 32 32 H 1.08997 * 109.47064 * 60.00123 * 5 3 2 33 33 H 1.08999 * 109.47273 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.46808 * 300.00026 * 5 3 2 35 35 H 0.96992 * 120.00197 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.46884 * 299.99983 * 14 12 11 37 37 H 1.08997 * 109.47118 * 59.99950 * 14 12 11 38 38 H 1.09004 * 109.47324 * 180.02562 * 14 12 11 39 39 H 1.09004 * 112.94958 * 50.32842 * 15 12 11 40 40 H 1.09002 * 113.76802 * 336.35149 * 16 15 12 41 41 H 1.09006 * 113.76867 * 107.74365 * 16 15 12 42 42 H 0.97002 * 119.99655 * 179.97438 * 21 20 18 43 43 H 1.09003 * 113.77075 * 221.15171 * 26 17 16 44 44 H 1.08996 * 113.87262 * 89.77012 * 26 17 16 45 45 H 1.07993 * 125.58638 * 179.73512 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3386 1.2639 0.7105 7 7 3.7324 2.1276 1.5788 8 6 4.9451 1.9178 2.0976 9 6 5.5547 2.8037 3.1037 10 8 6.6638 2.5579 3.5384 11 7 4.8836 3.8868 3.5429 12 6 5.4903 4.7685 4.5434 13 1 6.5660 4.8217 4.3763 14 6 5.2184 4.2142 5.9434 15 6 4.8856 6.1687 4.4230 16 6 5.5099 7.0192 3.3019 17 7 5.4733 8.1362 4.2692 18 6 5.4367 9.5005 4.1578 19 1 5.4122 10.1144 5.0461 20 6 5.4311 10.0946 2.9032 21 7 5.4605 9.3464 1.8207 22 14 5.3819 11.9557 2.7513 23 1 6.7682 12.4869 2.7227 24 1 4.6819 12.3316 1.4967 25 1 4.6563 12.5283 3.9135 26 6 5.4897 7.1911 5.4026 27 6 5.5605 0.8153 1.6136 28 16 4.5305 0.0638 0.4750 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.2570 1.8014 -1.9564 33 1 2.6615 2.7669 -1.4426 34 1 2.8830 1.0774 -1.9562 35 1 3.9993 4.0831 3.1961 36 1 4.1426 4.1611 6.1105 37 1 5.6492 3.2167 6.0292 38 1 5.6694 4.8704 6.6878 39 1 3.7956 6.1615 4.4130 40 1 6.5180 6.7101 3.0256 41 1 4.8559 7.1601 2.4413 42 1 5.4562 9.7615 0.9440 43 1 4.8196 7.4691 6.2161 44 1 6.4910 6.9317 5.7462 45 1 6.5436 0.4691 1.8964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969672004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = -7.827079 kcal Electronic energy + Delta-G solvation = -26821.310418 eV Core-core repulsion = 22966.814096 eV Total energy + Delta-G solvation = -3854.496322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69176 -40.46465 -39.56916 -38.90610 -36.25398 -34.19164 -33.56744 -31.87557 -30.67630 -29.37791 -27.77727 -27.14150 -26.40880 -25.66243 -24.71517 -22.80161 -21.99365 -21.26107 -20.61056 -19.62766 -18.77713 -17.83713 -17.44417 -17.25988 -16.91507 -16.85265 -16.61441 -16.11953 -15.80127 -15.68813 -15.11043 -14.98371 -14.69910 -14.61264 -14.11938 -13.99859 -13.64630 -13.44665 -13.30066 -13.24868 -13.11476 -12.96981 -12.90465 -12.72886 -12.62675 -12.53690 -12.04977 -12.02322 -11.76348 -11.55344 -11.33255 -11.14417 -10.94966 -10.87394 -10.85475 -10.64694 -10.20934 -9.88050 -8.93459 -7.90829 -5.25029 -0.57423 0.19757 0.58131 0.79835 1.44085 1.46760 1.55321 2.11613 2.21754 2.38996 2.46711 3.23556 3.29582 3.36924 3.60681 3.73721 3.91111 4.03190 4.06022 4.10487 4.23916 4.27227 4.45102 4.52957 4.56001 4.59511 4.67112 4.72479 4.72982 4.80674 4.83993 4.85942 4.92364 4.99112 5.06516 5.20496 5.24127 5.30680 5.42861 5.53157 5.63347 5.92048 6.03189 6.23743 6.56651 6.90334 7.09944 7.59964 8.55861 9.26036 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012270 B = 0.002641 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.398834 B =10601.128397 C =11861.874955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.164 3.836 4 H 0.095 0.905 5 C -0.168 4.168 6 C 0.002 3.998 7 N -0.454 5.454 8 C -0.014 4.014 9 C 0.590 3.410 10 O -0.571 6.571 11 N -0.695 5.695 12 C 0.157 3.843 13 H 0.065 0.935 14 C -0.148 4.148 15 C -0.111 4.111 16 C 0.168 3.832 17 N -0.644 5.644 18 C -0.235 4.235 19 H 0.086 0.914 20 C -0.071 4.071 21 N -0.955 5.955 22 Si 0.981 3.019 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.265 1.265 26 C 0.133 3.867 27 C -0.238 4.238 28 S 0.322 5.678 29 H 0.105 0.895 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.003 0.997 41 H 0.039 0.961 42 H 0.247 0.753 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.276 -24.233 -4.054 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C 0.103 3.897 4 H 0.113 0.887 5 C -0.226 4.226 6 C -0.277 4.277 7 N -0.171 5.171 8 C -0.149 4.149 9 C 0.375 3.625 10 O -0.452 6.452 11 N -0.344 5.344 12 C 0.052 3.948 13 H 0.083 0.917 14 C -0.206 4.206 15 C -0.130 4.130 16 C 0.043 3.957 17 N -0.370 5.370 18 C -0.363 4.363 19 H 0.104 0.896 20 C -0.264 4.264 21 N -0.604 5.604 22 Si 0.809 3.191 23 H -0.216 1.216 24 H -0.220 1.220 25 H -0.190 1.190 26 C 0.008 3.992 27 C -0.381 4.381 28 S 0.580 5.420 29 H 0.123 0.877 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.249 0.751 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -9.714 -24.676 -4.348 26.873 hybrid contribution 0.346 2.209 0.195 2.245 sum -9.368 -22.467 -4.153 24.693 Atomic orbital electron populations 1.23061 0.78260 1.04449 1.01294 1.87853 1.22293 1.26045 1.95245 1.20361 0.87410 0.86430 0.95543 0.88699 1.22298 1.04480 1.02120 0.93716 1.27204 1.03373 0.96950 1.00134 1.66794 1.12871 1.27974 1.09489 1.20217 0.92478 0.98643 1.03569 1.17355 0.84215 0.80698 0.80254 1.90767 1.20419 1.74029 1.59942 1.45873 1.21301 1.24879 1.42361 1.20960 0.97309 0.87765 0.88734 0.91678 1.22047 1.02889 1.01001 0.94711 1.23444 1.00590 0.91187 0.97817 1.22151 0.95426 0.84675 0.93464 1.46422 1.86027 1.00797 1.03800 1.19475 1.42468 0.81444 0.92953 0.89589 1.25686 1.03042 1.02614 0.95033 1.70035 1.58268 1.35085 0.97021 0.85043 0.77406 0.79483 0.77194 1.21563 1.21983 1.18951 1.22671 0.98054 0.86844 0.91670 1.27032 1.07909 0.99706 1.03492 1.82574 1.03088 1.23888 1.32436 0.87702 0.93402 0.92156 0.89118 0.91431 0.90886 0.75053 0.90992 0.93030 0.90135 0.88067 0.97910 0.94239 0.94379 0.91508 0.93590 0.78460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -5.85 10.17 -148.98 -1.52 -7.36 16 3 C 0.16 2.64 3.23 29.85 0.10 2.74 16 4 H 0.10 1.51 7.79 -2.38 -0.02 1.49 16 5 C -0.17 -2.19 9.51 71.98 0.68 -1.51 16 6 C 0.00 0.05 6.30 88.58 0.56 0.61 16 7 N -0.45 -12.00 10.12 -180.83 -1.83 -13.83 16 8 C -0.01 -0.39 6.70 40.56 0.27 -0.11 16 9 C 0.59 19.83 7.76 86.62 0.67 20.50 16 10 O -0.57 -22.06 16.37 -4.13 -0.07 -22.13 16 11 N -0.69 -22.09 5.07 -445.95 -2.26 -24.36 16 12 C 0.16 5.16 2.38 44.99 0.11 5.26 16 13 H 0.07 2.48 7.41 -2.39 -0.02 2.46 16 14 C -0.15 -3.93 9.31 71.98 0.67 -3.26 16 15 C -0.11 -4.11 3.47 -10.13 -0.04 -4.14 16 16 C 0.17 8.41 7.08 86.44 0.61 9.02 16 17 N -0.64 -34.10 3.70 -716.09 -2.65 -36.75 16 18 C -0.24 -13.54 10.70 84.03 0.90 -12.64 16 19 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 20 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 21 N -0.96 -59.50 11.39 21.65 0.25 -59.25 16 22 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 26 C 0.13 5.31 7.64 86.49 0.66 5.97 16 27 C -0.24 -5.44 10.62 67.12 0.71 -4.73 16 28 S 0.32 5.40 22.73 -56.49 -1.28 4.12 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.42 8.08 -2.39 -0.02 0.40 16 31 H 0.06 0.37 7.87 -2.39 -0.02 0.36 16 32 H 0.09 0.84 7.87 -2.39 -0.02 0.82 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.41 12.30 8.12 -92.71 -0.75 11.55 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.95 7.52 -2.39 -0.02 1.93 16 39 H 0.10 3.54 8.14 -2.38 -0.02 3.53 16 40 H 0.00 0.17 7.99 -2.39 -0.02 0.15 16 41 H 0.04 2.20 7.16 -2.38 -0.02 2.19 16 42 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 45 H 0.20 4.05 8.03 -2.91 -0.02 4.03 16 Total: -1.00 -75.73 390.54 0.51 -75.22 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.25 Total: 20.16 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 7.60 Total: 15.45 kcal Atomic # 7 Polarization: -127.68 SS G_CDS: -6.50 Total: -134.18 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.58 Total: -29.49 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.28 Total: 4.12 kcal Total: -75.73 0.51 -75.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969672004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.389 kcal (2) G-P(sol) polarization free energy of solvation -75.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds