Wall clock time and date at job start Sat Apr 11 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99737 * 2 1 4 4 H 1.08998 * 109.46900 * 30.00549 * 3 2 1 5 5 C 1.52996 * 109.47433 * 270.00148 * 3 2 1 6 6 C 1.50697 * 109.46730 * 149.99990 * 3 2 1 7 7 N 1.28652 * 124.72267 * 225.29265 * 6 3 2 8 8 C 1.33556 * 115.76935 * 180.19395 * 7 6 3 9 9 C 1.47273 * 123.14135 * 179.83285 * 8 7 6 10 10 O 1.21626 * 119.99798 * 179.72621 * 9 8 7 11 11 N 1.34779 * 119.99850 * 359.72195 * 9 8 7 12 12 C 1.46498 * 119.99683 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47037 * 325.00179 * 12 11 9 14 14 C 1.52997 * 109.47442 * 85.00303 * 12 11 9 15 15 C 1.53004 * 109.47052 * 205.00617 * 12 11 9 16 16 C 1.53497 * 114.20756 * 180.02562 * 15 12 11 17 17 N 1.47070 * 87.98301 * 220.34168 * 16 15 12 18 18 C 1.36932 * 136.05620 * 207.08686 * 17 16 15 19 19 H 1.08006 * 120.00205 * 7.81892 * 18 17 16 20 20 C 1.38809 * 120.00281 * 187.82655 * 18 17 16 21 21 N 1.31616 * 120.00068 * 195.17204 * 20 18 17 22 22 Si 1.86802 * 119.99918 * 15.16359 * 20 18 17 23 23 H 1.48504 * 109.47042 * 270.00682 * 22 20 18 24 24 H 1.48499 * 109.47021 * 30.00157 * 22 20 18 25 25 H 1.48492 * 109.47106 * 150.00508 * 22 20 18 26 26 C 1.47068 * 87.88415 * 27.33811 * 17 16 15 27 27 C 1.35204 * 113.71672 * 359.55890 * 8 7 6 28 28 S 1.70766 * 124.72252 * 45.03030 * 6 3 2 29 29 H 1.08998 * 109.46940 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46937 * 299.99652 * 1 2 3 31 31 H 1.09001 * 109.46983 * 59.99598 * 1 2 3 32 32 H 1.09005 * 109.47191 * 59.99647 * 5 3 2 33 33 H 1.08993 * 109.47416 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.46723 * 300.00249 * 5 3 2 35 35 H 0.96997 * 120.00003 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.46904 * 59.99183 * 14 12 11 37 37 H 1.08993 * 109.47359 * 180.02562 * 14 12 11 38 38 H 1.08999 * 109.46774 * 299.99974 * 14 12 11 39 39 H 1.09005 * 113.40728 * 313.19431 * 15 12 11 40 40 H 1.08996 * 113.46841 * 105.55693 * 16 15 12 41 41 H 1.08998 * 113.51535 * 335.12668 * 16 15 12 42 42 H 0.96995 * 120.00585 * 354.89801 * 21 20 18 43 43 H 1.09005 * 113.46482 * 87.44223 * 26 17 16 44 44 H 1.09000 * 113.46807 * 217.87726 * 26 17 16 45 45 H 1.08004 * 125.58719 * 180.20682 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7715 -1.4424 6 6 3.3386 1.2639 0.7104 7 7 3.7304 2.1246 1.5827 8 6 4.9449 1.9172 2.0981 9 6 5.5542 2.8027 3.1050 10 8 6.6632 2.5567 3.5397 11 7 4.8828 3.8855 3.5446 12 6 5.4892 4.7666 4.5457 13 1 6.0847 4.1729 5.2393 14 6 6.3880 5.7892 3.8478 15 6 4.3875 5.4975 5.3159 16 6 4.9053 6.4553 6.3979 17 7 3.8100 5.9889 7.2615 18 6 3.0837 6.5081 8.2997 19 1 3.1968 7.5472 8.5716 20 6 2.2020 5.6988 9.0030 21 7 1.2953 6.2404 9.7884 22 14 2.3025 3.8411 8.8348 23 1 1.4296 3.3973 7.7182 24 1 3.7057 3.4447 8.5537 25 1 1.8519 3.2046 10.0984 26 6 3.8424 4.7173 6.5233 27 6 5.5605 0.8153 1.6136 28 16 4.5308 0.0643 0.4743 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.2568 1.8015 -1.9563 33 1 2.6614 2.7671 -1.4424 34 1 2.8829 1.0776 -1.9563 35 1 3.9983 4.0814 3.1981 36 1 5.7925 6.3828 3.1542 37 1 6.8395 6.4444 4.5926 38 1 7.1728 5.2684 3.2991 39 1 3.6192 5.9250 4.6716 40 1 4.8233 7.5066 6.1223 41 1 5.8949 6.1939 6.7727 42 1 1.2898 7.1994 9.9337 43 1 4.5518 3.9969 6.9308 44 1 2.8548 4.2880 6.3547 45 1 6.5420 0.4669 1.8991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969672012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:53 Heat of formation + Delta-G solvation = 23.063822 kcal Electronic energy + Delta-G solvation = -26932.383126 eV Core-core repulsion = 23079.226334 eV Total energy + Delta-G solvation = -3853.156792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.75443 -39.46829 -38.68259 -38.06950 -35.02917 -32.95989 -32.39625 -30.77409 -29.93520 -27.72961 -27.33333 -26.22718 -25.25143 -24.30330 -23.31632 -21.55191 -20.75114 -20.17702 -19.54319 -18.69320 -17.44028 -16.84624 -16.82020 -16.55077 -15.99766 -15.82297 -15.28217 -15.10722 -14.76564 -14.30071 -14.07476 -13.79590 -13.59083 -13.43629 -13.24833 -13.20204 -12.97833 -12.75386 -12.25339 -12.20311 -12.14010 -11.87367 -11.77373 -11.55026 -11.47250 -10.91218 -10.68922 -10.39753 -10.36127 -10.18329 -10.09957 -9.95229 -9.92871 -9.46155 -9.26791 -9.14324 -8.92366 -8.66008 -7.15248 -6.28431 -3.20110 0.21895 0.91870 1.35695 1.70342 2.87571 3.25516 3.28637 3.44452 3.52088 3.65601 3.90348 4.35696 4.57028 4.61579 4.63740 4.72844 4.86594 4.89901 4.96219 4.97524 5.01618 5.14981 5.16717 5.24967 5.28322 5.45573 5.49299 5.54173 5.61641 5.63388 5.78692 5.90157 6.04274 6.20135 6.27568 6.31236 6.37955 6.43522 6.53504 6.61985 6.96352 7.07233 7.16476 7.59868 8.19339 8.25957 8.99774 9.53306 10.40571 11.21653 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.002952 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.852565 B = 9481.843123 C =10772.639962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.162 3.838 4 H 0.096 0.904 5 C -0.169 4.169 6 C 0.018 3.982 7 N -0.434 5.434 8 C 0.013 3.987 9 C 0.594 3.406 10 O -0.537 6.537 11 N -0.701 5.701 12 C 0.151 3.849 13 H 0.091 0.909 14 C -0.158 4.158 15 C -0.138 4.138 16 C 0.131 3.869 17 N -0.625 5.625 18 C -0.304 4.304 19 H 0.082 0.918 20 C -0.023 4.023 21 N -0.933 5.933 22 Si 1.061 2.939 23 H -0.294 1.294 24 H -0.282 1.282 25 H -0.295 1.295 26 C 0.108 3.892 27 C -0.232 4.232 28 S 0.250 5.750 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.409 0.591 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.047 0.953 41 H 0.038 0.962 42 H 0.261 0.739 43 H 0.045 0.955 44 H 0.050 0.950 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.873 -12.641 -27.292 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.101 3.899 4 H 0.114 0.886 5 C -0.227 4.227 6 C -0.261 4.261 7 N -0.151 5.151 8 C -0.123 4.123 9 C 0.377 3.623 10 O -0.414 6.414 11 N -0.351 5.351 12 C 0.046 3.954 13 H 0.109 0.891 14 C -0.216 4.216 15 C -0.158 4.158 16 C 0.004 3.996 17 N -0.353 5.353 18 C -0.430 4.430 19 H 0.100 0.900 20 C -0.222 4.222 21 N -0.575 5.575 22 Si 0.892 3.108 23 H -0.222 1.222 24 H -0.208 1.208 25 H -0.222 1.222 26 C -0.018 4.018 27 C -0.374 4.374 28 S 0.507 5.493 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.244 0.756 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.608 -14.689 -26.739 30.721 hybrid contribution 0.562 2.318 0.253 2.399 sum 4.170 -12.371 -26.487 29.529 Atomic orbital electron populations 1.22875 0.79586 1.03398 1.00626 1.87895 1.20819 1.26268 1.95124 1.20306 0.88340 0.86274 0.94973 0.88649 1.22297 1.03407 1.02470 0.94572 1.26728 1.02061 0.96849 1.00504 1.66834 1.12756 1.27281 1.08195 1.20431 0.91252 0.98014 1.02587 1.17028 0.84693 0.80257 0.80355 1.90809 1.19223 1.73293 1.58122 1.45947 1.21156 1.25437 1.42520 1.21088 0.94469 0.90608 0.89236 0.89109 1.22116 0.99484 0.98911 1.01084 1.23531 0.97608 0.99179 0.95525 1.22284 0.92159 0.96602 0.88554 1.46188 1.37112 1.12739 1.39228 1.20137 1.18848 0.95462 1.08586 0.90038 1.25748 0.94313 1.05942 0.96243 1.70899 1.31715 1.13472 1.41426 0.83792 0.75790 0.75695 0.75484 1.22176 1.20803 1.22243 1.22736 0.98790 0.90910 0.89335 1.26768 1.07275 0.99947 1.03401 1.82898 1.05477 1.26207 1.34733 0.89021 0.93283 0.93516 0.90907 0.90636 0.91312 0.75575 0.92482 0.91131 0.92542 0.88341 0.93476 0.94482 0.92880 0.93737 0.93181 0.79182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.10 10.17 -35.23 -0.36 -3.46 16 3 C 0.16 1.28 3.23 -27.89 -0.09 1.19 16 4 H 0.10 0.74 7.79 -51.93 -0.40 0.33 16 5 C -0.17 -0.97 9.51 37.16 0.35 -0.62 16 6 C 0.02 0.18 6.30 -13.61 -0.09 0.09 16 7 N -0.43 -5.28 10.12 -8.51 -0.09 -5.36 16 8 C 0.01 0.17 6.70 -84.53 -0.57 -0.40 16 9 C 0.59 8.97 7.76 -12.59 -0.10 8.87 16 10 O -0.54 -9.41 16.37 5.25 0.09 -9.32 16 11 N -0.70 -9.98 5.07 -54.93 -0.28 -10.26 16 12 C 0.15 2.26 2.47 -67.93 -0.17 2.09 16 13 H 0.09 1.52 7.32 -51.93 -0.38 1.14 16 14 C -0.16 -2.03 9.29 37.16 0.35 -1.69 16 15 C -0.14 -2.38 3.67 -89.97 -0.33 -2.71 16 16 C 0.13 2.58 7.33 -8.50 -0.06 2.52 16 17 N -0.63 -15.72 3.62 -184.59 -0.67 -16.39 16 18 C -0.30 -8.95 11.03 -15.06 -0.17 -9.11 16 19 H 0.08 2.51 8.06 -52.48 -0.42 2.08 16 20 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 21 N -0.93 -29.95 13.70 55.49 0.76 -29.19 16 22 Si 1.06 27.59 25.50 -169.99 -4.34 23.26 16 23 H -0.29 -7.35 6.97 56.52 0.39 -6.96 16 24 H -0.28 -6.92 5.66 56.52 0.32 -6.60 16 25 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 26 C 0.11 2.35 5.18 -8.37 -0.04 2.31 16 27 C -0.23 -2.48 10.62 29.65 0.31 -2.16 16 28 S 0.25 2.09 22.73 -107.50 -2.44 -0.35 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.05 0.19 7.87 -51.93 -0.41 -0.22 16 32 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.41 5.36 8.12 -40.82 -0.33 5.03 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 43 H 0.05 0.99 6.81 -51.93 -0.35 0.63 16 44 H 0.05 1.13 6.22 -51.93 -0.32 0.81 16 45 H 0.19 1.81 8.03 -52.48 -0.42 1.39 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -35.53 383.94 -8.02 -43.56 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.89 Total: 0.91 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 0.40 Total: 0.83 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.27 Total: -61.21 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.27 Total: -12.78 kcal Atomic # 14 Polarization: 27.59 SS G_CDS: -4.34 Total: 23.26 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.44 Total: -0.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.53 -8.02 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969672012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.620 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds