Wall clock time and date at job start Sat Apr 11 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09001 * 109.47377 * 330.00266 * 3 2 1 5 5 C 1.53005 * 109.47197 * 90.00111 * 3 2 1 6 6 C 1.50706 * 109.47222 * 209.99898 * 3 2 1 7 7 N 1.28650 * 124.71911 * 134.72026 * 6 3 2 8 8 C 1.33563 * 115.76481 * 179.79154 * 7 6 3 9 9 C 1.47261 * 123.14098 * 180.23930 * 8 7 6 10 10 O 1.21630 * 119.99860 * 180.26081 * 9 8 7 11 11 N 1.34776 * 120.00115 * 0.25563 * 9 8 7 12 12 C 1.46502 * 119.99772 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47128 * 35.00040 * 12 11 9 14 14 C 1.53002 * 109.46989 * 274.99844 * 12 11 9 15 15 C 1.52996 * 109.46991 * 155.00394 * 12 11 9 16 16 C 1.53953 * 113.74139 * 278.73777 * 15 12 11 17 17 N 1.47810 * 86.03852 * 222.08172 * 16 15 12 18 18 C 1.36931 * 134.45814 * 204.63959 * 17 16 15 19 19 H 1.07998 * 119.99973 * 179.86764 * 18 17 16 20 20 C 1.38808 * 120.00177 * 359.86962 * 18 17 16 21 21 N 1.31623 * 119.99786 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00137 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46816 * 90.00623 * 22 20 18 24 24 H 1.48498 * 109.46973 * 209.99965 * 22 20 18 25 25 H 1.48493 * 109.47478 * 330.00302 * 22 20 18 26 26 C 1.47582 * 91.04863 * 24.54872 * 17 16 15 27 27 C 1.35205 * 113.71502 * 0.49671 * 8 7 6 28 28 S 1.70767 * 124.72014 * 315.03232 * 6 3 2 29 29 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46899 * 179.97438 * 5 3 2 33 33 H 1.08994 * 109.46766 * 299.99641 * 5 3 2 34 34 H 1.09001 * 109.46830 * 59.99820 * 5 3 2 35 35 H 0.97000 * 119.99900 * 0.02562 * 11 9 8 36 36 H 1.09004 * 109.46929 * 60.00612 * 14 12 11 37 37 H 1.08996 * 109.47078 * 180.02562 * 14 12 11 38 38 H 1.08995 * 109.47346 * 300.00063 * 14 12 11 39 39 H 1.09000 * 112.94983 * 50.32601 * 15 12 11 40 40 H 1.08996 * 113.76709 * 336.34933 * 16 15 12 41 41 H 1.09003 * 113.76962 * 107.74331 * 16 15 12 42 42 H 0.97004 * 119.99951 * 179.97438 * 21 20 18 43 43 H 1.09000 * 113.76747 * 221.14659 * 26 17 16 44 44 H 1.09006 * 113.87463 * 89.76704 * 26 17 16 45 45 H 1.08000 * 125.58661 * 179.75912 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7104 7 7 3.7304 2.1249 -1.5825 8 6 4.9451 1.9178 -2.0977 9 6 5.5550 2.8043 -3.1031 10 8 6.6643 2.5586 -3.5375 11 7 4.8841 3.8877 -3.5419 12 6 5.4908 4.7692 -4.5425 13 1 6.0859 4.1757 -5.2365 14 6 6.3901 5.7909 -3.8438 15 6 4.3894 5.5012 -5.3119 16 6 3.7591 4.6633 -6.4392 17 7 3.8110 5.8996 -7.2477 18 6 3.1106 6.3706 -8.3259 19 1 3.3485 7.3376 -8.7439 20 6 2.0947 5.6052 -8.8817 21 7 1.8044 4.4269 -8.3720 22 14 1.1386 6.2481 -10.3522 23 1 1.8097 5.8182 -11.6052 24 1 -0.2433 5.7055 -10.3197 25 1 1.0894 7.7313 -10.3007 26 6 4.9189 6.4232 -6.4252 27 6 5.5602 0.8152 -1.6140 28 16 4.5303 0.0636 -0.4754 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.6613 2.7671 1.4425 33 1 1.2568 1.8015 1.9563 34 1 2.8829 1.0775 1.9563 35 1 3.9997 4.0837 -3.1953 36 1 7.1748 5.2694 -3.2956 37 1 6.8411 6.4471 -4.5882 38 1 5.7949 6.3844 -3.1498 39 1 3.6588 5.9775 -4.6582 40 1 4.4060 3.8684 -6.8100 41 1 2.7471 4.3225 -6.2201 42 1 1.0942 3.8922 -8.7602 43 1 4.8313 7.4851 -6.1950 44 1 5.9082 6.1475 -6.7906 45 1 6.5416 0.4665 -1.8999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969672013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:55 Heat of formation + Delta-G solvation = 16.723785 kcal Electronic energy + Delta-G solvation = -26831.166372 eV Core-core repulsion = 22977.734655 eV Total energy + Delta-G solvation = -3853.431717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.62015 -39.23989 -38.43625 -37.74959 -34.76931 -32.86634 -32.15024 -30.49230 -29.81303 -27.48065 -27.25761 -26.08231 -24.82714 -24.15695 -23.46265 -21.57233 -20.77511 -20.02569 -19.34090 -18.40894 -16.86717 -16.74024 -16.56541 -16.37395 -15.86099 -15.67494 -15.14794 -14.84830 -14.58530 -14.16641 -13.84218 -13.80405 -13.41135 -13.33277 -13.14210 -12.97263 -12.69419 -12.43963 -12.11450 -12.09806 -12.00962 -11.61858 -11.46941 -11.29612 -11.24766 -10.89111 -10.68880 -10.33239 -10.29186 -10.08478 -10.04152 -9.83281 -9.76095 -9.70580 -9.36843 -9.14945 -8.75959 -8.71243 -6.83253 -5.72476 -3.04801 0.32600 1.02206 1.45875 1.82986 2.97209 3.40510 3.41998 3.43379 3.45935 3.47941 4.00055 4.46180 4.48452 4.65687 4.73147 4.93482 5.00529 5.04751 5.08823 5.17461 5.24319 5.31780 5.32694 5.34315 5.35229 5.57235 5.65447 5.68793 5.71061 5.85626 6.00050 6.07911 6.28517 6.39951 6.44832 6.61519 6.63254 6.70592 6.84400 7.19559 7.28747 7.41557 7.60874 7.76792 8.02164 8.35520 9.08481 9.74902 10.64754 11.44490 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.002730 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.112230 B =10253.761445 C =11830.228405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.162 3.838 4 H 0.096 0.904 5 C -0.169 4.169 6 C 0.018 3.982 7 N -0.432 5.432 8 C 0.015 3.985 9 C 0.593 3.407 10 O -0.540 6.540 11 N -0.697 5.697 12 C 0.149 3.851 13 H 0.089 0.911 14 C -0.158 4.158 15 C -0.146 4.146 16 C 0.171 3.829 17 N -0.613 5.613 18 C -0.222 4.222 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.131 3.869 27 C -0.232 4.232 28 S 0.245 5.755 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.408 0.592 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.026 0.974 41 H 0.071 0.929 42 H 0.253 0.747 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 -8.539 23.833 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.101 3.899 4 H 0.114 0.886 5 C -0.227 4.227 6 C -0.261 4.261 7 N -0.149 5.149 8 C -0.121 4.121 9 C 0.376 3.624 10 O -0.417 6.417 11 N -0.346 5.346 12 C 0.045 3.955 13 H 0.107 0.893 14 C -0.216 4.216 15 C -0.166 4.166 16 C 0.046 3.954 17 N -0.339 5.339 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.004 3.996 27 C -0.374 4.374 28 S 0.502 5.498 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.244 0.756 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.234 -9.295 23.709 25.564 hybrid contribution -0.711 1.099 -1.529 2.012 sum 1.523 -8.196 22.180 23.695 Atomic orbital electron populations 1.22871 0.79647 1.03348 1.00614 1.87892 1.20774 1.26310 1.95119 1.20305 0.88393 0.86249 0.94929 0.88623 1.22296 1.03340 1.02462 0.94620 1.26718 1.02020 0.96846 1.00557 1.66841 1.12712 1.27289 1.08037 1.20465 0.91149 0.97969 1.02470 1.17020 0.84715 0.80324 0.80361 1.90801 1.19325 1.73387 1.58221 1.45925 1.21050 1.25273 1.42378 1.21165 0.94782 0.90495 0.89106 0.89339 1.22130 0.99502 0.98996 1.00981 1.23815 0.96993 0.99570 0.96239 1.22292 0.99013 0.89052 0.85081 1.45997 1.35516 1.17438 1.34939 1.19026 1.10467 1.00826 1.04677 0.90285 1.24786 0.99477 0.96568 0.99706 1.69830 1.32993 1.11499 1.42484 0.86129 0.79254 0.77962 0.82482 1.21658 1.21662 1.20636 1.22487 0.92107 0.96214 0.88774 1.26752 1.07251 0.99959 1.03469 1.82854 1.05650 1.26350 1.34952 0.93248 0.93573 0.89070 0.90644 0.90964 0.91342 0.75626 0.92772 0.91301 0.92679 0.89346 0.95645 0.91030 0.93714 0.93755 0.94745 0.79229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.29 16 2 O -0.38 -3.39 10.17 -35.23 -0.36 -3.75 16 3 C 0.16 1.41 3.23 -27.88 -0.09 1.32 16 4 H 0.10 0.82 7.79 -51.93 -0.40 0.42 16 5 C -0.17 -1.08 9.51 37.16 0.35 -0.73 16 6 C 0.02 0.20 6.30 -13.61 -0.09 0.11 16 7 N -0.43 -5.74 10.12 -8.51 -0.09 -5.82 16 8 C 0.02 0.21 6.70 -84.53 -0.57 -0.35 16 9 C 0.59 9.76 7.76 -12.59 -0.10 9.66 16 10 O -0.54 -10.17 16.37 5.25 0.09 -10.08 16 11 N -0.70 -10.96 5.07 -54.93 -0.28 -11.24 16 12 C 0.15 2.46 2.38 -67.93 -0.16 2.30 16 13 H 0.09 1.65 7.41 -51.93 -0.39 1.26 16 14 C -0.16 -2.21 9.31 37.16 0.35 -1.87 16 15 C -0.15 -2.74 3.47 -89.69 -0.31 -3.05 16 16 C 0.17 4.14 7.08 -2.84 -0.02 4.12 16 17 N -0.61 -16.12 3.70 -177.67 -0.66 -16.78 16 18 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -27.95 11.39 55.49 0.63 -27.32 16 22 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.13 2.70 7.64 -2.97 -0.02 2.67 16 27 C -0.23 -2.72 10.62 29.65 0.31 -2.41 16 28 S 0.24 2.27 22.73 -107.50 -2.44 -0.18 16 29 H 0.05 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.05 0.21 7.87 -51.93 -0.41 -0.20 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.41 6.02 8.12 -40.82 -0.33 5.69 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 41 H 0.07 1.91 7.16 -51.93 -0.37 1.54 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.19 2.00 8.03 -52.49 -0.42 1.57 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -34.48 390.54 -8.63 -43.11 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.88 Total: 2.49 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 0.49 Total: 6.16 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.39 Total: -61.15 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.27 Total: -13.83 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.44 Total: -0.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.48 -8.63 -43.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969672013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.833 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds