Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99891 * 2 1 4 4 H 1.08993 * 109.47134 * 330.00449 * 3 2 1 5 5 C 1.53005 * 109.46714 * 90.00247 * 3 2 1 6 6 C 1.50695 * 109.47249 * 210.00187 * 3 2 1 7 7 N 1.29428 * 124.80530 * 314.96040 * 6 3 2 8 8 C 1.30950 * 117.36442 * 179.76888 * 7 6 3 9 9 C 1.35662 * 114.18802 * 0.47833 * 8 7 6 10 10 C 1.46686 * 126.12727 * 179.82531 * 9 8 7 11 11 O 1.21692 * 119.99640 * 179.69558 * 10 9 8 12 12 N 1.34772 * 119.99979 * 359.69348 * 10 9 8 13 13 C 1.46501 * 119.99753 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47045 * 34.99976 * 13 12 10 15 15 C 1.53000 * 109.47136 * 274.99983 * 13 12 10 16 16 C 1.53004 * 109.47141 * 155.00281 * 13 12 10 17 17 C 1.53499 * 114.20194 * 295.68016 * 16 13 12 18 18 N 1.47073 * 87.98271 * 220.34656 * 17 16 13 19 19 C 1.36940 * 136.05404 * 207.09125 * 18 17 16 20 20 H 1.07994 * 120.00255 * 7.50552 * 19 18 17 21 21 C 1.38809 * 119.99403 * 187.50851 * 19 18 17 22 22 N 1.31620 * 120.00068 * 174.39899 * 21 19 18 23 23 Si 1.86807 * 120.00352 * 354.39502 * 21 19 18 24 24 H 1.48500 * 109.46966 * 174.95922 * 23 21 19 25 25 H 1.48502 * 109.46905 * 294.96117 * 23 21 19 26 26 H 1.48499 * 109.46854 * 54.95771 * 23 21 19 27 27 C 1.47068 * 87.88382 * 27.34125 * 18 17 16 28 28 S 1.70949 * 124.80524 * 135.00414 * 6 3 2 29 29 H 1.08999 * 109.46663 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47024 * 299.99303 * 1 2 3 31 31 H 1.08998 * 109.47451 * 60.00043 * 1 2 3 32 32 H 1.08997 * 109.47084 * 300.00213 * 5 3 2 33 33 H 1.09006 * 109.46874 * 60.00038 * 5 3 2 34 34 H 1.09002 * 109.46685 * 180.02562 * 5 3 2 35 35 H 1.07994 * 122.90512 * 180.31430 * 8 7 6 36 36 H 0.96998 * 119.99893 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.47162 * 304.63827 * 15 13 12 38 38 H 1.08999 * 109.47223 * 64.63874 * 15 13 12 39 39 H 1.08999 * 109.46923 * 184.63216 * 15 13 12 40 40 H 1.08999 * 113.41397 * 68.87868 * 16 13 12 41 41 H 1.08995 * 113.46790 * 105.56503 * 17 16 13 42 42 H 1.09003 * 113.52350 * 335.12944 * 17 16 13 43 43 H 0.97005 * 119.99470 * 355.00405 * 22 21 19 44 44 H 1.09002 * 113.46505 * 87.44231 * 27 18 17 45 45 H 1.08999 * 113.46808 * 217.87742 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7713 1.4426 6 6 3.3385 1.2640 -0.7104 7 7 4.2433 0.3558 -0.5326 8 6 5.3455 0.4591 -1.2321 9 6 5.3826 1.5370 -2.0551 10 6 6.4864 1.9058 -2.9480 11 8 6.3987 2.8990 -3.6456 12 7 7.5976 1.1447 -2.9957 13 6 8.7002 1.5133 -3.8871 14 1 8.7779 2.5993 -3.9390 15 6 8.4340 0.9537 -5.2860 16 6 10.0088 0.9336 -3.3465 17 6 10.4358 1.5043 -1.9870 18 7 11.8190 1.5202 -2.4865 19 6 13.0686 1.4444 -1.9316 20 1 13.1801 1.2251 -0.8800 21 6 14.1919 1.6494 -2.7208 22 7 15.3862 1.6861 -2.1688 23 14 14.0088 1.8732 -4.5663 24 1 15.3315 2.1954 -5.1595 25 1 13.4888 0.6190 -5.1678 26 1 13.0605 2.9830 -4.8386 27 6 11.2696 1.6598 -3.8436 28 16 3.8641 2.4104 -1.8644 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.2569 1.8013 1.9564 33 1 2.8830 1.0773 1.9563 34 1 2.6606 2.7673 1.4426 35 1 6.1560 -0.2508 -1.1582 36 1 7.6673 0.3528 -2.4399 37 1 8.2745 -0.1227 -5.2224 38 1 7.5465 1.4284 -5.7045 39 1 9.2913 1.1568 -5.9278 40 1 10.0604 -0.1533 -3.4110 41 1 10.2814 0.8133 -1.1583 42 1 10.0350 2.4981 -1.7872 43 1 15.4761 1.6426 -1.2039 44 1 11.0883 2.6946 -4.1341 45 1 11.8256 1.1013 -4.5965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969679049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = 0.700193 kcal Electronic energy + Delta-G solvation = -26504.772687 eV Core-core repulsion = 22650.646135 eV Total energy + Delta-G solvation = -3854.126552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51181 -40.80450 -39.91561 -38.95456 -36.36880 -34.55808 -33.70498 -32.35461 -30.40152 -29.53584 -27.78843 -27.07787 -26.85201 -25.52016 -24.10946 -23.18658 -22.11450 -21.34876 -20.56739 -19.57095 -19.42333 -18.54340 -17.54119 -17.18502 -17.05522 -16.61715 -16.40013 -16.16222 -15.85441 -15.84007 -15.22016 -15.18374 -15.10974 -14.93787 -14.43843 -14.15917 -13.69010 -13.60974 -13.37550 -13.27145 -13.14632 -13.09230 -12.72563 -12.63920 -12.58527 -12.36002 -12.04033 -12.00338 -11.70406 -11.60219 -11.27539 -11.09622 -10.93378 -10.82195 -10.65736 -10.52585 -10.23811 -10.00346 -9.24110 -8.62877 -5.49241 -0.92177 -0.03439 0.51036 1.31967 1.38742 1.49611 1.68018 2.05289 2.08404 2.54699 2.77145 2.95778 2.97245 3.17852 3.45342 3.67034 3.72405 3.82905 4.02274 4.03116 4.09554 4.18259 4.28090 4.46950 4.48391 4.57279 4.57301 4.64699 4.66079 4.73188 4.77087 4.78432 4.84042 4.88848 4.92141 5.02129 5.18291 5.21653 5.29494 5.38105 5.47036 5.93730 6.09945 6.37889 6.54853 6.68369 7.04552 7.31192 8.25862 8.88533 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024959 B = 0.002174 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.590490 B =12875.681938 C =13443.602184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.394 6.394 3 C 0.159 3.841 4 H 0.110 0.890 5 C -0.165 4.165 6 C 0.037 3.963 7 N -0.479 5.479 8 C 0.103 3.897 9 C -0.314 4.314 10 C 0.598 3.402 11 O -0.574 6.574 12 N -0.695 5.695 13 C 0.163 3.837 14 H 0.074 0.926 15 C -0.156 4.156 16 C -0.104 4.104 17 C 0.126 3.874 18 N -0.662 5.662 19 C -0.292 4.292 20 H 0.049 0.951 21 C -0.088 4.088 22 N -0.970 5.970 23 Si 1.107 2.893 24 H -0.306 1.306 25 H -0.263 1.263 26 H -0.262 1.262 27 C 0.098 3.902 28 S 0.255 5.745 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.205 0.795 36 H 0.415 0.585 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.245 0.755 44 H 0.051 0.949 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.724 -2.255 0.698 35.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.313 6.313 3 C 0.098 3.902 4 H 0.128 0.872 5 C -0.224 4.224 6 C -0.238 4.238 7 N -0.194 5.194 8 C -0.057 4.057 9 C -0.438 4.438 10 C 0.384 3.616 11 O -0.455 6.455 12 N -0.346 5.346 13 C 0.057 3.943 14 H 0.092 0.908 15 C -0.214 4.214 16 C -0.124 4.124 17 C 0.000 4.000 18 N -0.390 5.390 19 C -0.419 4.419 20 H 0.067 0.933 21 C -0.279 4.279 22 N -0.616 5.616 23 Si 0.932 3.068 24 H -0.234 1.234 25 H -0.189 1.189 26 H -0.187 1.187 27 C -0.027 4.027 28 S 0.515 5.485 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.221 0.779 36 H 0.252 0.748 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -35.205 -1.034 -1.124 35.238 hybrid contribution 0.583 -0.846 2.393 2.604 sum -34.623 -1.880 1.269 34.697 Atomic orbital electron populations 1.23099 0.78731 1.04221 1.01551 1.88051 1.21767 1.26333 1.95130 1.20763 0.86670 0.86731 0.96033 0.87230 1.22264 1.04169 1.02049 0.93963 1.27887 1.00862 0.95402 0.99602 1.66127 1.01577 1.26632 1.25048 1.22614 0.96254 0.96056 0.90758 1.25751 1.02728 1.04853 1.10512 1.16825 0.81574 0.82470 0.80770 1.90833 1.81407 1.27968 1.45258 1.45668 1.15524 1.29260 1.44155 1.20856 0.83573 0.99870 0.89972 0.90778 1.22106 1.02411 1.02114 0.94795 1.23295 0.91674 1.01323 0.96108 1.22503 0.83169 0.97978 0.96308 1.46097 1.01181 1.86910 1.04830 1.20018 0.82756 1.44508 0.94653 0.93297 1.27142 0.91069 0.99171 1.10551 1.71026 1.23611 1.55405 1.11512 0.83311 0.74560 0.78187 0.70703 1.23390 1.18898 1.18744 1.22954 0.92499 0.98404 0.88834 1.83913 1.06372 1.25162 1.33094 0.88649 0.92043 0.92545 0.89084 0.92550 0.90232 0.77855 0.74815 0.90523 0.92766 0.90603 0.86101 0.92830 0.94423 0.94579 0.93119 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.82 113.37 1.23 1.38 16 2 O -0.39 -6.23 10.32 -148.98 -1.54 -7.76 16 3 C 0.16 2.03 3.23 29.85 0.10 2.12 16 4 H 0.11 0.75 7.78 -2.39 -0.02 0.73 16 5 C -0.17 -1.73 9.51 71.98 0.68 -1.05 16 6 C 0.04 0.65 6.28 88.46 0.56 1.21 16 7 N -0.48 -10.16 10.49 -190.31 -2.00 -12.15 16 8 C 0.10 1.92 10.93 84.23 0.92 2.85 16 9 C -0.31 -6.61 6.48 23.88 0.15 -6.45 16 10 C 0.60 14.91 7.75 86.45 0.67 15.58 16 11 O -0.57 -18.39 16.63 -4.32 -0.07 -18.46 16 12 N -0.70 -14.72 4.93 -446.49 -2.20 -16.92 16 13 C 0.16 3.99 2.35 44.99 0.11 4.10 16 14 H 0.07 2.17 7.41 -2.39 -0.02 2.15 16 15 C -0.16 -3.27 9.48 71.98 0.68 -2.59 16 16 C -0.10 -3.01 3.52 -10.37 -0.04 -3.05 16 17 C 0.13 4.57 8.12 83.18 0.68 5.25 16 18 N -0.66 -31.69 3.69 -737.87 -2.72 -34.41 16 19 C -0.29 -17.17 11.08 84.03 0.93 -16.24 16 20 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 21 C -0.09 -5.32 5.50 84.86 0.47 -4.85 16 22 N -0.97 -63.61 13.70 21.65 0.30 -63.32 16 23 Si 1.11 53.40 25.16 68.60 1.73 55.12 16 24 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 25 H -0.26 -11.33 6.51 99.48 0.65 -10.68 16 26 H -0.26 -11.47 6.21 99.48 0.62 -10.85 16 27 C 0.10 3.78 5.27 83.27 0.44 4.22 16 28 S 0.26 4.50 23.01 -56.49 -1.30 3.20 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.26 7.87 -2.39 -0.02 0.24 16 31 H 0.06 0.28 8.08 -2.39 -0.02 0.26 16 32 H 0.09 0.57 7.87 -2.39 -0.02 0.55 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.20 2.64 7.15 -2.91 -0.02 2.62 16 36 H 0.41 6.49 7.31 -92.71 -0.68 5.81 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 40 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.04 1.39 8.11 -2.39 -0.02 1.37 16 43 H 0.25 16.16 8.73 -92.70 -0.81 15.35 16 44 H 0.05 1.94 7.50 -2.39 -0.02 1.92 16 45 H 0.06 2.18 4.72 -2.39 -0.01 2.17 16 Total: -1.00 -80.89 383.79 -0.09 -80.98 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.14 Total: 11.25 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 7.57 Total: 2.47 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -6.62 Total: -126.80 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -1.61 Total: -26.23 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 1.73 Total: 55.12 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.30 Total: 3.20 kcal Total: -80.89 -0.09 -80.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969679049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.678 kcal (2) G-P(sol) polarization free energy of solvation -80.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds