Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00346 * 2 1 4 4 H 1.09006 * 109.47020 * 30.00328 * 3 2 1 5 5 C 1.52997 * 109.47151 * 270.00119 * 3 2 1 6 6 C 1.50702 * 109.47321 * 149.99901 * 3 2 1 7 7 N 1.28649 * 124.72281 * 225.00560 * 6 3 2 8 8 C 1.33562 * 115.76395 * 180.02562 * 7 6 3 9 9 C 1.47269 * 123.13665 * 179.97438 * 8 7 6 10 10 O 1.21625 * 119.99942 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00236 * 0.02707 * 9 8 7 12 12 C 1.47023 * 125.64775 * 359.68842 * 11 9 8 13 13 C 1.54333 * 107.26655 * 178.85019 * 12 11 9 14 14 C 1.55159 * 103.01793 * 338.14049 * 13 12 11 15 15 H 1.08995 * 111.00990 * 277.22928 * 14 13 12 16 16 N 1.46504 * 110.99862 * 153.37820 * 14 13 12 17 17 C 1.46499 * 120.00279 * 306.35311 * 16 14 13 18 18 C 1.36945 * 119.99440 * 126.35503 * 16 14 13 19 19 H 1.07994 * 120.00223 * 23.30275 * 18 16 14 20 20 C 1.38814 * 119.99363 * 203.30680 * 18 16 14 21 21 N 1.31618 * 120.00584 * 14.00497 * 20 18 16 22 22 Si 1.86805 * 119.99519 * 193.99995 * 20 18 16 23 23 H 1.48502 * 109.46802 * 90.00243 * 22 20 18 24 24 H 1.48505 * 109.46935 * 209.99893 * 22 20 18 25 25 H 1.48494 * 109.47214 * 329.99948 * 22 20 18 26 26 C 1.47420 * 125.65145 * 180.02562 * 11 9 8 27 27 C 1.35201 * 113.71951 * 0.02562 * 8 7 6 28 28 S 1.70776 * 124.71625 * 45.02170 * 6 3 2 29 29 H 1.08996 * 109.47132 * 300.00104 * 1 2 3 30 30 H 1.09002 * 109.47138 * 59.99573 * 1 2 3 31 31 H 1.08995 * 109.47567 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47109 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.47106 * 299.99521 * 5 3 2 34 34 H 1.08995 * 109.47297 * 60.00176 * 5 3 2 35 35 H 1.08996 * 109.88452 * 298.39741 * 12 11 9 36 36 H 1.09008 * 109.88006 * 59.56031 * 12 11 9 37 37 H 1.09003 * 110.85125 * 219.68033 * 13 12 11 38 38 H 1.08996 * 110.66418 * 96.52776 * 13 12 11 39 39 H 1.09000 * 109.46958 * 95.17167 * 17 16 14 40 40 H 1.08997 * 109.46602 * 215.16748 * 17 16 14 41 41 H 1.09000 * 109.46853 * 335.16919 * 17 16 14 42 42 H 0.96996 * 120.00462 * 180.02562 * 21 20 18 43 43 H 1.09002 * 110.36467 * 322.93112 * 26 11 9 44 44 H 1.08994 * 110.37038 * 85.13804 * 26 11 9 45 45 H 1.08001 * 125.58592 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.3387 1.2638 0.7104 7 7 3.7326 2.1273 1.5788 8 6 4.9454 1.9174 2.0975 9 6 5.5555 2.8038 3.1029 10 8 6.6649 2.5585 3.5368 11 7 4.8844 3.8870 3.5423 12 6 3.5455 4.3031 3.0999 13 6 3.1757 5.5746 3.8926 14 6 4.0937 5.4878 5.1405 15 1 3.6577 4.8415 5.9022 16 7 4.3713 6.8205 5.6818 17 6 4.9116 7.8671 4.8106 18 6 4.1257 7.0879 7.0022 19 1 4.0959 6.2816 7.7200 20 6 3.9150 8.3955 7.4179 21 7 3.6765 9.3379 6.5306 22 14 3.9697 8.8175 9.2369 23 1 5.3576 9.1825 9.6187 24 1 3.0645 9.9634 9.5066 25 1 3.5306 7.6422 10.0311 26 6 5.3742 4.8546 4.5408 27 6 5.5610 0.8157 1.6126 28 16 4.5307 0.0639 0.4744 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.6616 2.7669 -1.4425 33 1 2.8831 1.0773 -1.9563 34 1 1.2570 1.8014 -1.9563 35 1 3.5588 4.5205 2.0319 36 1 2.8236 3.5140 3.3107 37 1 2.1257 5.5581 4.1846 38 1 3.3989 6.4690 3.3110 39 1 4.0948 8.4800 4.4293 40 1 5.6006 8.4924 5.3783 41 1 5.4412 7.4076 3.9761 42 1 3.5296 10.2516 6.8211 43 1 5.9437 4.3432 5.3169 44 1 5.9879 5.6170 4.0612 45 1 6.5428 0.4674 1.8978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971539121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = 3.966050 kcal Electronic energy + Delta-G solvation = -27326.268309 eV Core-core repulsion = 23472.283375 eV Total energy + Delta-G solvation = -3853.984934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.66776 -39.19047 -38.36085 -37.26742 -34.77178 -32.87093 -31.60726 -29.94640 -29.69366 -28.14412 -27.29248 -26.08415 -25.79031 -24.32651 -22.74155 -22.19742 -20.83159 -19.56343 -19.27273 -18.27750 -17.02957 -16.77528 -16.58139 -16.15600 -15.92957 -15.72242 -15.33843 -14.88333 -14.38120 -14.09962 -13.88088 -13.35985 -13.34966 -13.26272 -13.14910 -12.81774 -12.60352 -12.45139 -12.35769 -12.12089 -12.00587 -11.85271 -11.51097 -11.25155 -10.92721 -10.78555 -10.47770 -10.46576 -10.32122 -10.20582 -10.06790 -9.87845 -9.83176 -9.81386 -9.74851 -9.13690 -8.58273 -8.26662 -6.78824 -5.75297 -3.22766 0.31397 1.01519 1.44666 1.84358 2.94153 3.28513 3.38464 3.41984 3.45239 3.46384 3.97151 4.42597 4.48443 4.62918 4.68993 4.89252 4.94683 4.98655 5.08674 5.15409 5.21617 5.28750 5.29988 5.33860 5.50911 5.54093 5.67971 5.69695 5.73039 5.88301 6.02238 6.18534 6.36160 6.48079 6.56871 6.62099 6.68392 6.79467 6.93110 7.23375 7.34237 7.70143 7.78153 7.79394 8.30004 8.37152 9.19857 9.82268 10.31285 11.29167 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.002554 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.385581 B =10961.116122 C =11797.639348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.164 3.836 4 H 0.095 0.905 5 C -0.169 4.169 6 C 0.015 3.985 7 N -0.426 5.426 8 C 0.021 3.979 9 C 0.600 3.400 10 O -0.544 6.544 11 N -0.593 5.593 12 C 0.119 3.881 13 C -0.154 4.154 14 C 0.174 3.826 15 H 0.078 0.922 16 N -0.585 5.585 17 C 0.159 3.841 18 C -0.260 4.260 19 H 0.070 0.930 20 C 0.005 3.995 21 N -0.904 5.904 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.085 3.915 27 C -0.232 4.232 28 S 0.241 5.759 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.041 0.959 41 H 0.002 0.998 42 H 0.253 0.747 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 -18.858 -18.274 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.103 3.897 4 H 0.113 0.887 5 C -0.228 4.228 6 C -0.264 4.264 7 N -0.143 5.143 8 C -0.115 4.115 9 C 0.385 3.615 10 O -0.422 6.422 11 N -0.325 5.325 12 C -0.004 4.004 13 C -0.194 4.194 14 C 0.063 3.937 15 H 0.096 0.904 16 N -0.305 5.305 17 C 0.014 3.986 18 C -0.389 4.389 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.549 5.549 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.204 1.204 26 C -0.039 4.039 27 C -0.374 4.374 28 S 0.499 5.501 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.021 0.979 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.621 -19.406 -18.486 27.197 hybrid contribution 0.180 1.210 1.595 2.010 sum -4.440 -18.196 -16.891 25.221 Atomic orbital electron populations 1.22859 0.79720 1.03283 1.00582 1.87891 1.20702 1.26415 1.95127 1.20289 0.88367 0.86100 0.94979 0.88695 1.22299 1.03342 1.02549 0.94583 1.26798 1.02004 0.96828 1.00816 1.67075 1.12790 1.26488 1.07958 1.20389 0.91216 0.97640 1.02253 1.16657 0.84298 0.79758 0.80740 1.90803 1.19196 1.73265 1.58952 1.48251 1.18703 1.24198 1.41308 1.22065 0.82930 0.96881 0.98537 1.23280 1.01320 0.96204 0.98633 1.21407 0.90602 0.88565 0.93111 0.90365 1.43815 1.72769 1.06115 1.07806 1.20812 0.96601 0.89921 0.91240 1.19232 1.43643 0.92794 0.83264 0.91237 1.25022 0.99839 0.96817 0.97696 1.70069 1.51510 1.01191 1.32089 0.86232 0.77504 0.77766 0.84889 1.21430 1.21756 1.20426 1.23081 0.99779 0.90607 0.90454 1.26729 1.07193 1.00094 1.03433 1.82842 1.05684 1.26524 1.35089 0.93376 0.93532 0.89114 0.90578 0.91346 0.90964 0.91661 0.91358 0.90619 0.90714 0.94760 0.94021 0.97948 0.93687 0.90826 0.91152 0.79285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.16 10.17 -35.23 -0.36 -3.52 16 3 C 0.16 1.36 3.23 -27.88 -0.09 1.27 16 4 H 0.10 0.76 7.79 -51.93 -0.40 0.36 16 5 C -0.17 -1.08 9.51 37.16 0.35 -0.73 16 6 C 0.01 0.16 6.30 -13.61 -0.09 0.07 16 7 N -0.43 -5.66 7.66 -8.51 -0.07 -5.72 16 8 C 0.02 0.30 6.62 -84.53 -0.56 -0.26 16 9 C 0.60 10.72 7.83 -12.59 -0.10 10.62 16 10 O -0.54 -11.06 16.97 5.26 0.09 -10.97 16 11 N -0.59 -10.51 3.33 -171.83 -0.57 -11.09 16 12 C 0.12 1.87 5.46 -3.06 -0.02 1.85 16 13 C -0.15 -2.73 6.51 -24.89 -0.16 -2.89 16 14 C 0.17 3.58 3.54 -65.77 -0.23 3.34 16 15 H 0.08 1.63 7.95 -51.93 -0.41 1.22 16 16 N -0.58 -14.46 2.96 -171.02 -0.51 -14.96 16 17 C 0.16 3.85 7.61 59.85 0.46 4.30 16 18 C -0.26 -7.07 9.60 -15.05 -0.14 -7.22 16 19 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 20 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 21 N -0.90 -26.01 10.79 55.49 0.60 -25.41 16 22 Si 0.91 21.78 29.58 -169.99 -5.03 16.75 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.08 1.65 6.46 -2.52 -0.02 1.63 16 27 C -0.23 -2.77 10.62 29.65 0.31 -2.45 16 28 S 0.24 2.21 22.74 -107.50 -2.44 -0.24 16 29 H 0.05 0.25 8.08 -51.93 -0.42 -0.16 16 30 H 0.05 0.19 7.87 -51.93 -0.41 -0.22 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 35 H 0.07 0.98 7.65 -51.93 -0.40 0.58 16 36 H 0.07 1.03 7.51 -51.92 -0.39 0.64 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.39 7.08 -51.93 -0.37 1.02 16 39 H 0.03 0.89 7.33 -51.93 -0.38 0.51 16 40 H 0.04 1.09 7.39 -51.93 -0.38 0.70 16 41 H 0.00 0.04 6.34 -51.93 -0.33 -0.28 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 44 H 0.07 1.42 6.34 -51.93 -0.33 1.09 16 45 H 0.19 2.04 8.03 -52.49 -0.42 1.62 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -32.17 378.68 -8.57 -40.73 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.71 Total: -2.15 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 0.72 Total: 10.86 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.54 Total: -57.18 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.27 Total: -14.49 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.44 Total: -0.24 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.17 -8.57 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971539121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.700 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds