Wall clock time and date at job start Sat Apr 11 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00346 * 2 1 4 4 H 1.09006 * 109.47020 * 30.00328 * 3 2 1 5 5 C 1.52997 * 109.47151 * 270.00119 * 3 2 1 6 6 C 1.50702 * 109.47321 * 149.99901 * 3 2 1 7 7 N 1.28649 * 124.72281 * 225.00560 * 6 3 2 8 8 C 1.33562 * 115.76395 * 180.02562 * 7 6 3 9 9 C 1.47269 * 123.13665 * 179.97438 * 8 7 6 10 10 O 1.21625 * 119.99942 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00236 * 0.02707 * 9 8 7 12 12 C 1.47023 * 125.64775 * 359.68842 * 11 9 8 13 13 C 1.54333 * 107.26655 * 178.85019 * 12 11 9 14 14 C 1.55159 * 103.01793 * 338.14049 * 13 12 11 15 15 H 1.08995 * 111.00990 * 277.22928 * 14 13 12 16 16 N 1.46504 * 110.99862 * 153.37820 * 14 13 12 17 17 C 1.46499 * 120.00279 * 306.35311 * 16 14 13 18 18 C 1.36945 * 119.99440 * 126.35503 * 16 14 13 19 19 H 1.07994 * 120.00223 * 23.30275 * 18 16 14 20 20 C 1.38814 * 119.99363 * 203.30680 * 18 16 14 21 21 N 1.31618 * 120.00584 * 14.00497 * 20 18 16 22 22 Si 1.86805 * 119.99519 * 193.99995 * 20 18 16 23 23 H 1.48502 * 109.46802 * 90.00243 * 22 20 18 24 24 H 1.48505 * 109.46935 * 209.99893 * 22 20 18 25 25 H 1.48494 * 109.47214 * 329.99948 * 22 20 18 26 26 C 1.47420 * 125.65145 * 180.02562 * 11 9 8 27 27 C 1.35201 * 113.71951 * 0.02562 * 8 7 6 28 28 S 1.70776 * 124.71625 * 45.02170 * 6 3 2 29 29 H 1.08996 * 109.47132 * 300.00104 * 1 2 3 30 30 H 1.09002 * 109.47138 * 59.99573 * 1 2 3 31 31 H 1.08995 * 109.47567 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47109 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.47106 * 299.99521 * 5 3 2 34 34 H 1.08995 * 109.47297 * 60.00176 * 5 3 2 35 35 H 1.08996 * 109.88452 * 298.39741 * 12 11 9 36 36 H 1.09008 * 109.88006 * 59.56031 * 12 11 9 37 37 H 1.09003 * 110.85125 * 219.68033 * 13 12 11 38 38 H 1.08996 * 110.66418 * 96.52776 * 13 12 11 39 39 H 1.09000 * 109.46958 * 95.17167 * 17 16 14 40 40 H 1.08997 * 109.46602 * 215.16748 * 17 16 14 41 41 H 1.09000 * 109.46853 * 335.16919 * 17 16 14 42 42 H 0.96996 * 120.00462 * 180.02562 * 21 20 18 43 43 H 1.09002 * 110.36467 * 322.93112 * 26 11 9 44 44 H 1.08994 * 110.37038 * 85.13804 * 26 11 9 45 45 H 1.08001 * 125.58592 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.3387 1.2638 0.7104 7 7 3.7326 2.1273 1.5788 8 6 4.9454 1.9174 2.0975 9 6 5.5555 2.8038 3.1029 10 8 6.6649 2.5585 3.5368 11 7 4.8844 3.8870 3.5423 12 6 3.5455 4.3031 3.0999 13 6 3.1757 5.5746 3.8926 14 6 4.0937 5.4878 5.1405 15 1 3.6577 4.8415 5.9022 16 7 4.3713 6.8205 5.6818 17 6 4.9116 7.8671 4.8106 18 6 4.1257 7.0879 7.0022 19 1 4.0959 6.2816 7.7200 20 6 3.9150 8.3955 7.4179 21 7 3.6765 9.3379 6.5306 22 14 3.9697 8.8175 9.2369 23 1 5.3576 9.1825 9.6187 24 1 3.0645 9.9634 9.5066 25 1 3.5306 7.6422 10.0311 26 6 5.3742 4.8546 4.5408 27 6 5.5610 0.8157 1.6126 28 16 4.5307 0.0639 0.4744 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.6616 2.7669 -1.4425 33 1 2.8831 1.0773 -1.9563 34 1 1.2570 1.8014 -1.9563 35 1 3.5588 4.5205 2.0319 36 1 2.8236 3.5140 3.3107 37 1 2.1257 5.5581 4.1846 38 1 3.3989 6.4690 3.3110 39 1 4.0948 8.4800 4.4293 40 1 5.6006 8.4924 5.3783 41 1 5.4412 7.4076 3.9761 42 1 3.5296 10.2516 6.8211 43 1 5.9437 4.3432 5.3169 44 1 5.9879 5.6170 4.0612 45 1 6.5428 0.4674 1.8978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971539121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:42 Heat of formation + Delta-G solvation = -16.737322 kcal Electronic energy + Delta-G solvation = -27327.166074 eV Core-core repulsion = 23472.283375 eV Total energy + Delta-G solvation = -3854.882699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.78746 -40.32235 -39.18274 -38.69145 -36.59208 -33.64789 -33.38368 -31.39077 -30.71306 -29.67585 -28.08005 -27.74732 -26.91444 -25.50076 -24.25622 -23.45707 -21.74562 -20.98620 -20.56945 -19.45604 -18.96474 -17.68900 -17.45760 -17.30213 -17.20666 -16.71035 -16.43464 -16.24443 -15.83577 -15.22567 -15.07867 -14.86887 -14.80318 -14.42028 -14.27770 -13.98164 -13.83825 -13.62071 -13.47895 -13.24606 -13.02619 -12.89236 -12.82805 -12.61871 -12.51509 -12.40157 -12.18027 -12.10209 -12.01481 -11.84972 -11.50029 -11.33374 -10.88215 -10.78521 -10.65964 -10.63178 -10.05620 -9.68285 -8.80794 -7.84766 -5.34576 -0.58528 0.20003 0.57595 0.78401 1.46884 1.48837 1.56949 1.88791 2.15644 2.35610 2.50955 3.18230 3.28028 3.51766 3.54880 3.85961 3.91632 4.04887 4.09106 4.11011 4.19180 4.25247 4.32604 4.41357 4.54138 4.58174 4.61750 4.69961 4.76044 4.81771 4.88150 4.93724 4.94313 4.98101 5.16312 5.20067 5.23488 5.26954 5.40160 5.63383 5.68901 6.05821 6.29055 6.30842 6.42887 6.94357 7.12205 7.81462 8.26382 9.18017 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.002554 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.385581 B =10961.116122 C =11797.639348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.163 3.837 4 H 0.096 0.904 5 C -0.166 4.166 6 C 0.003 3.997 7 N -0.446 5.446 8 C -0.008 4.008 9 C 0.597 3.403 10 O -0.578 6.578 11 N -0.597 5.597 12 C 0.135 3.865 13 C -0.142 4.142 14 C 0.169 3.831 15 H 0.073 0.927 16 N -0.600 5.600 17 C 0.177 3.823 18 C -0.270 4.270 19 H 0.070 0.930 20 C -0.046 4.046 21 N -0.932 5.932 22 Si 0.969 3.031 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.097 3.903 27 C -0.237 4.237 28 S 0.324 5.676 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.014 0.986 40 H 0.014 0.986 41 H 0.028 0.972 42 H 0.250 0.750 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.150 -20.921 -19.867 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.102 3.898 4 H 0.114 0.886 5 C -0.224 4.224 6 C -0.276 4.276 7 N -0.163 5.163 8 C -0.144 4.144 9 C 0.385 3.615 10 O -0.460 6.460 11 N -0.328 5.328 12 C 0.013 3.987 13 C -0.182 4.182 14 C 0.060 3.940 15 H 0.092 0.908 16 N -0.321 5.321 17 C 0.032 3.968 18 C -0.400 4.400 19 H 0.088 0.912 20 C -0.242 4.242 21 N -0.578 5.578 22 Si 0.797 3.203 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.194 1.194 26 C -0.028 4.028 27 C -0.380 4.380 28 S 0.582 5.418 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -5.776 -21.516 -20.110 30.012 hybrid contribution 0.514 1.678 1.986 2.650 sum -5.262 -19.838 -18.124 27.381 Atomic orbital electron populations 1.23046 0.78291 1.04360 1.01309 1.87852 1.22250 1.26266 1.95256 1.20394 0.87285 0.86389 0.95727 0.88594 1.22289 1.04451 1.02256 0.93412 1.27299 1.03359 0.96841 1.00093 1.66997 1.12363 1.27855 1.09074 1.19986 0.92641 0.98466 1.03289 1.17144 0.83910 0.79656 0.80839 1.90767 1.20720 1.74103 1.60362 1.48292 1.19361 1.24150 1.41031 1.22000 0.82089 0.95909 0.98737 1.23125 1.00986 0.96994 0.97082 1.21492 0.91792 0.86594 0.94141 0.90830 1.43959 1.73256 1.07436 1.07438 1.20522 0.95368 0.89567 0.91348 1.19526 1.42906 0.93000 0.84576 0.91240 1.25747 1.00123 0.96789 1.01505 1.70211 1.52730 1.01188 1.33681 0.85251 0.77101 0.77511 0.80460 1.21520 1.21906 1.19368 1.22728 0.98794 0.90671 0.90563 1.26994 1.07922 0.99509 1.03585 1.82592 1.03023 1.23984 1.32202 0.93511 0.91973 0.87926 0.90967 0.90998 0.89205 0.90311 0.90216 0.89857 0.91509 0.96783 0.96737 0.95392 0.94111 0.92199 0.92031 0.78684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 113.37 1.23 1.44 16 2 O -0.40 -5.45 10.17 -148.98 -1.51 -6.96 16 3 C 0.16 2.29 3.23 29.85 0.10 2.39 16 4 H 0.10 1.32 7.79 -2.38 -0.02 1.30 16 5 C -0.17 -1.65 9.51 71.98 0.68 -0.97 16 6 C 0.00 0.06 6.30 88.58 0.56 0.62 16 7 N -0.45 -11.10 7.66 -180.83 -1.38 -12.49 16 8 C -0.01 -0.24 6.62 40.56 0.27 0.03 16 9 C 0.60 21.32 7.83 86.62 0.68 22.00 16 10 O -0.58 -23.92 16.97 -4.11 -0.07 -23.99 16 11 N -0.60 -21.06 3.33 -815.79 -2.71 -23.78 16 12 C 0.14 4.09 5.46 86.73 0.47 4.56 16 13 C -0.14 -4.94 6.51 31.79 0.21 -4.73 16 14 C 0.17 7.00 3.54 46.39 0.16 7.16 16 15 H 0.07 3.10 7.95 -2.39 -0.02 3.08 16 16 N -0.60 -30.11 2.96 -694.98 -2.05 -32.17 16 17 C 0.18 8.76 7.61 127.77 0.97 9.73 16 18 C -0.27 -14.88 9.60 84.03 0.81 -14.08 16 19 H 0.07 3.75 7.86 -2.91 -0.02 3.72 16 20 C -0.05 -2.56 5.08 84.86 0.43 -2.13 16 21 N -0.93 -54.63 10.79 21.65 0.23 -54.40 16 22 Si 0.97 45.20 29.58 68.60 2.03 47.23 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 C 0.10 3.83 6.46 86.86 0.56 4.40 16 27 C -0.24 -5.27 10.62 67.12 0.71 -4.56 16 28 S 0.32 5.01 22.74 -56.49 -1.28 3.73 16 29 H 0.05 0.40 8.08 -2.39 -0.02 0.38 16 30 H 0.06 0.31 7.87 -2.39 -0.02 0.30 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.09 0.58 7.87 -2.39 -0.02 0.57 16 35 H 0.08 2.22 7.65 -2.39 -0.02 2.21 16 36 H 0.08 2.28 7.51 -2.38 -0.02 2.26 16 37 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.07 2.45 7.08 -2.39 -0.02 2.43 16 39 H 0.01 0.74 7.33 -2.39 -0.02 0.73 16 40 H 0.01 0.76 7.39 -2.39 -0.02 0.74 16 41 H 0.03 1.21 6.34 -2.39 -0.02 1.19 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.06 2.50 8.04 -2.39 -0.02 2.48 16 44 H 0.06 2.52 6.34 -2.39 -0.02 2.50 16 45 H 0.20 3.97 8.03 -2.91 -0.02 3.95 16 Total: -1.00 -69.95 378.68 2.08 -67.87 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.99 Total: 9.11 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 7.84 Total: 25.85 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -5.92 Total: -122.83 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.58 Total: -30.95 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -1.28 Total: 3.73 kcal Total: -69.95 2.08 -67.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971539121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.134 kcal (2) G-P(sol) polarization free energy of solvation -69.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds