Wall clock time and date at job start Sat Apr 11 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00007 * 2 1 4 4 H 1.08994 * 109.47396 * 329.99890 * 3 2 1 5 5 C 1.52997 * 109.46955 * 90.00285 * 3 2 1 6 6 C 1.50706 * 109.46937 * 210.00116 * 3 2 1 7 7 N 1.28646 * 124.71955 * 135.00502 * 6 3 2 8 8 C 1.33553 * 115.76625 * 179.97438 * 7 6 3 9 9 C 1.47273 * 123.14368 * 179.97438 * 8 7 6 10 10 O 1.21626 * 120.00199 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99353 * 359.97438 * 9 8 7 12 12 C 1.47419 * 125.65098 * 0.03017 * 11 9 8 13 13 C 1.54920 * 104.83230 * 155.83255 * 12 11 9 14 14 C 1.55152 * 101.57872 * 37.00762 * 13 12 11 15 15 H 1.09000 * 110.72149 * 83.03897 * 14 13 12 16 16 N 1.46500 * 110.72046 * 206.13443 * 14 13 12 17 17 C 1.46496 * 119.99862 * 57.56066 * 16 14 13 18 18 C 1.36941 * 120.00129 * 237.56070 * 16 14 13 19 19 H 1.08000 * 120.00059 * 336.20250 * 18 16 14 20 20 C 1.38810 * 120.00011 * 156.20248 * 18 16 14 21 21 N 1.31622 * 119.99870 * 330.80202 * 20 18 16 22 22 Si 1.86801 * 120.00077 * 150.80964 * 20 18 16 23 23 H 1.48500 * 109.46572 * 269.99694 * 22 20 18 24 24 H 1.48492 * 109.46926 * 29.99691 * 22 20 18 25 25 H 1.48500 * 109.46993 * 149.99833 * 22 20 18 26 26 C 1.47320 * 125.60871 * 180.16252 * 11 9 8 27 27 C 1.35215 * 113.71833 * 0.24267 * 8 7 6 28 28 S 1.70774 * 124.71879 * 314.99929 * 6 3 2 29 29 H 1.09001 * 109.47027 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47240 * 299.99673 * 1 2 3 31 31 H 1.09000 * 109.46911 * 60.00147 * 1 2 3 32 32 H 1.09006 * 109.47022 * 299.99950 * 5 3 2 33 33 H 1.08994 * 109.47391 * 59.99602 * 5 3 2 34 34 H 1.09001 * 109.46924 * 179.97438 * 5 3 2 35 35 H 1.08997 * 110.37242 * 36.99499 * 12 11 9 36 36 H 1.09000 * 110.46044 * 274.71650 * 12 11 9 37 37 H 1.08998 * 111.00208 * 278.93831 * 13 12 11 38 38 H 1.08997 * 111.03537 * 155.09203 * 13 12 11 39 39 H 1.09001 * 109.47066 * 272.88183 * 17 16 14 40 40 H 1.09000 * 109.47494 * 32.88378 * 17 16 14 41 41 H 1.08998 * 109.47352 * 152.88731 * 17 16 14 42 42 H 0.96998 * 119.99992 * 353.71520 * 21 20 18 43 43 H 1.08998 * 110.06203 * 61.76271 * 26 11 9 44 44 H 1.08997 * 109.85747 * 300.49072 * 26 11 9 45 45 H 1.07996 * 125.58670 * 179.76183 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3387 1.2638 -0.7105 7 7 3.7326 2.1275 -1.5787 8 6 4.9452 1.9176 -2.0975 9 6 5.5549 2.8036 -3.1036 10 8 6.6644 2.5583 -3.5375 11 7 4.8834 3.8862 -3.5435 12 6 3.5385 4.3001 -3.1042 13 6 3.4827 5.8236 -3.3794 14 6 4.2810 5.9299 -4.7056 15 1 3.6412 5.7079 -5.5597 16 7 4.8832 7.2583 -4.8430 17 6 5.7957 7.7591 -3.8121 18 6 4.5932 8.0320 -5.9351 19 1 4.2599 7.5686 -6.8520 20 6 4.7274 9.4117 -5.8636 21 7 4.5624 10.0303 -4.7136 22 14 5.1422 10.3906 -7.3996 23 1 6.6170 10.5029 -7.5316 24 1 4.5897 9.6987 -8.5917 25 1 4.5496 11.7483 -7.2964 26 6 5.3717 4.8500 -4.5450 27 6 5.5586 0.8126 -1.6170 28 16 4.5305 0.0637 -0.4748 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.2568 1.8013 1.9564 33 1 2.8829 1.0774 1.9563 34 1 2.6615 2.7669 1.4425 35 1 3.4091 4.1019 -2.0402 36 1 2.7728 3.7821 -3.6817 37 1 3.9730 6.3828 -2.5825 38 1 2.4546 6.1595 -3.5143 39 1 5.2219 8.2514 -3.0270 40 1 6.3545 6.9260 -3.3857 41 1 6.4897 8.4725 -4.2566 42 1 4.2582 9.5361 -3.9364 43 1 5.5384 4.3471 -5.4976 44 1 6.2980 5.3075 -4.1978 45 1 6.5381 0.4615 -1.9060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971539123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:50 Heat of formation + Delta-G solvation = 3.820057 kcal Electronic energy + Delta-G solvation = -27434.800370 eV Core-core repulsion = 23580.809105 eV Total energy + Delta-G solvation = -3853.991265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.72743 -39.23603 -38.40811 -37.36868 -35.02619 -32.90601 -31.64531 -29.97162 -29.69788 -28.16721 -27.32234 -26.29475 -25.73926 -24.29739 -22.69690 -22.14758 -20.90904 -19.65425 -19.29550 -18.37201 -17.54100 -16.82047 -16.66690 -16.26941 -15.94258 -15.75134 -15.39876 -14.82332 -14.22938 -14.05428 -13.98034 -13.59427 -13.48725 -13.37037 -13.19625 -13.05102 -12.73599 -12.64738 -12.22430 -12.15067 -11.99161 -11.88064 -11.53984 -11.36420 -10.90832 -10.76332 -10.70809 -10.56570 -10.35598 -10.20445 -10.06101 -9.98007 -9.88758 -9.76412 -9.44386 -9.17674 -8.37768 -8.31650 -6.99082 -6.09369 -3.23613 0.27660 0.97663 1.40786 1.79091 2.90424 3.23103 3.37604 3.52218 3.53809 3.70230 3.93399 4.38793 4.57986 4.59849 4.65258 4.86279 4.90349 4.95288 5.04634 5.06480 5.18896 5.23441 5.27066 5.28651 5.38026 5.46308 5.60422 5.66462 5.66799 5.82159 5.91021 6.11666 6.26686 6.40507 6.48011 6.53115 6.58540 6.63547 6.82074 6.89842 7.11745 7.17860 7.71960 7.96826 8.26030 8.54109 9.07625 9.81752 10.20013 11.18002 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002578 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.908366 B =10857.752572 C =11718.594260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.164 3.836 4 H 0.095 0.905 5 C -0.170 4.170 6 C 0.014 3.986 7 N -0.428 5.428 8 C 0.021 3.979 9 C 0.600 3.400 10 O -0.543 6.543 11 N -0.593 5.593 12 C 0.105 3.895 13 C -0.155 4.155 14 C 0.173 3.827 15 H 0.080 0.920 16 N -0.589 5.589 17 C 0.132 3.868 18 C -0.362 4.362 19 H 0.060 0.940 20 C -0.018 4.018 21 N -0.910 5.910 22 Si 1.064 2.936 23 H -0.293 1.293 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.088 3.912 27 C -0.232 4.232 28 S 0.245 5.755 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.012 0.988 40 H 0.018 0.982 41 H 0.053 0.947 42 H 0.270 0.730 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 -21.810 13.742 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.103 3.897 4 H 0.113 0.887 5 C -0.228 4.228 6 C -0.265 4.265 7 N -0.145 5.145 8 C -0.115 4.115 9 C 0.385 3.615 10 O -0.421 6.421 11 N -0.324 5.324 12 C -0.018 4.018 13 C -0.195 4.195 14 C 0.063 3.937 15 H 0.098 0.902 16 N -0.310 5.310 17 C -0.013 4.013 18 C -0.491 4.491 19 H 0.078 0.922 20 C -0.221 4.221 21 N -0.549 5.549 22 Si 0.894 3.106 23 H -0.220 1.220 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.036 4.036 27 C -0.375 4.375 28 S 0.502 5.498 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.030 0.970 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.449 -21.017 13.409 25.751 hybrid contribution -0.210 -0.714 -0.152 0.759 sum -6.659 -21.731 13.257 26.312 Atomic orbital electron populations 1.22861 0.79710 1.03296 1.00578 1.87892 1.20711 1.26388 1.95129 1.20294 0.88329 0.86107 0.95014 0.88709 1.22304 1.03395 1.02592 0.94542 1.26841 1.01969 0.96834 1.00811 1.67071 1.12884 1.26246 1.08272 1.20381 0.91263 0.97545 1.02280 1.16681 0.84270 0.79794 0.80761 1.90805 1.19147 1.73084 1.59082 1.48336 1.18613 1.24302 1.41178 1.22551 0.82825 0.94996 1.01391 1.23417 1.01832 0.93557 1.00732 1.21340 0.91159 0.85627 0.95570 0.90163 1.43914 1.49352 1.13502 1.24217 1.20966 0.92577 0.96109 0.91645 1.19994 1.48780 0.90331 0.89950 0.92188 1.25773 0.99166 0.93873 1.03319 1.70751 1.43360 1.38206 1.02548 0.83548 0.76693 0.75688 0.74720 1.22008 1.21818 1.21696 1.22818 1.00234 0.90000 0.90545 1.26733 1.07261 1.00042 1.03414 1.82848 1.05715 1.26502 1.34718 0.89094 0.93500 0.93411 0.90919 0.91312 0.90545 0.88918 0.91951 0.91062 0.90463 0.96994 0.96350 0.92842 0.91845 0.91766 0.90790 0.79255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.10 10.17 -35.23 -0.36 -3.46 16 3 C 0.16 1.34 3.23 -27.88 -0.09 1.25 16 4 H 0.10 0.74 7.79 -51.93 -0.40 0.34 16 5 C -0.17 -1.10 9.51 37.16 0.35 -0.74 16 6 C 0.01 0.15 6.30 -13.61 -0.09 0.07 16 7 N -0.43 -5.64 7.33 -8.50 -0.06 -5.70 16 8 C 0.02 0.30 6.61 -84.52 -0.56 -0.26 16 9 C 0.60 10.75 7.83 -12.59 -0.10 10.65 16 10 O -0.54 -11.11 17.04 5.25 0.09 -11.02 16 11 N -0.59 -10.54 3.33 -171.60 -0.57 -11.11 16 12 C 0.11 1.65 6.04 -2.53 -0.02 1.63 16 13 C -0.15 -2.75 6.65 -24.58 -0.16 -2.92 16 14 C 0.17 3.56 3.43 -66.10 -0.23 3.33 16 15 H 0.08 1.66 7.94 -51.93 -0.41 1.25 16 16 N -0.59 -14.55 2.81 -171.39 -0.48 -15.04 16 17 C 0.13 3.17 7.80 59.84 0.47 3.64 16 18 C -0.36 -9.97 9.41 -15.06 -0.14 -10.12 16 19 H 0.06 1.66 7.97 -52.49 -0.42 1.24 16 20 C -0.02 -0.51 4.62 -17.43 -0.08 -0.59 16 21 N -0.91 -27.01 12.71 55.49 0.71 -26.30 16 22 Si 1.06 25.26 30.01 -169.99 -5.10 20.16 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.09 1.72 6.47 -2.90 -0.02 1.70 16 27 C -0.23 -2.76 10.62 29.66 0.31 -2.45 16 28 S 0.24 2.22 22.74 -107.50 -2.44 -0.22 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.18 7.87 -51.93 -0.41 -0.23 16 31 H 0.05 0.24 8.09 -51.93 -0.42 -0.18 16 32 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.37 6.02 -51.93 -0.31 1.06 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.35 7.12 -51.93 -0.37 0.98 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.01 0.30 6.69 -51.93 -0.35 -0.05 16 40 H 0.02 0.40 6.23 -51.93 -0.32 0.07 16 41 H 0.05 1.39 7.27 -51.93 -0.38 1.01 16 42 H 0.27 8.05 6.38 -40.82 -0.26 7.79 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.57 6.08 -51.93 -0.32 1.25 16 45 H 0.19 2.04 8.03 -52.49 -0.42 1.62 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -33.01 376.99 -8.33 -41.34 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.53 Total: -0.80 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 0.75 Total: 6.47 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.41 Total: -58.15 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.27 Total: -14.48 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.10 Total: 20.16 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.44 Total: -0.22 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.01 -8.33 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971539123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.158 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds