Wall clock time and date at job start Sat Apr 11 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00007 * 2 1 4 4 H 1.08994 * 109.47396 * 329.99890 * 3 2 1 5 5 C 1.52997 * 109.46955 * 90.00285 * 3 2 1 6 6 C 1.50706 * 109.46937 * 210.00116 * 3 2 1 7 7 N 1.28646 * 124.71955 * 135.00502 * 6 3 2 8 8 C 1.33553 * 115.76625 * 179.97438 * 7 6 3 9 9 C 1.47273 * 123.14368 * 179.97438 * 8 7 6 10 10 O 1.21626 * 120.00199 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99353 * 359.97438 * 9 8 7 12 12 C 1.47419 * 125.65098 * 0.03017 * 11 9 8 13 13 C 1.54920 * 104.83230 * 155.83255 * 12 11 9 14 14 C 1.55152 * 101.57872 * 37.00762 * 13 12 11 15 15 H 1.09000 * 110.72149 * 83.03897 * 14 13 12 16 16 N 1.46500 * 110.72046 * 206.13443 * 14 13 12 17 17 C 1.46496 * 119.99862 * 57.56066 * 16 14 13 18 18 C 1.36941 * 120.00129 * 237.56070 * 16 14 13 19 19 H 1.08000 * 120.00059 * 336.20250 * 18 16 14 20 20 C 1.38810 * 120.00011 * 156.20248 * 18 16 14 21 21 N 1.31622 * 119.99870 * 330.80202 * 20 18 16 22 22 Si 1.86801 * 120.00077 * 150.80964 * 20 18 16 23 23 H 1.48500 * 109.46572 * 269.99694 * 22 20 18 24 24 H 1.48492 * 109.46926 * 29.99691 * 22 20 18 25 25 H 1.48500 * 109.46993 * 149.99833 * 22 20 18 26 26 C 1.47320 * 125.60871 * 180.16252 * 11 9 8 27 27 C 1.35215 * 113.71833 * 0.24267 * 8 7 6 28 28 S 1.70774 * 124.71879 * 314.99929 * 6 3 2 29 29 H 1.09001 * 109.47027 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47240 * 299.99673 * 1 2 3 31 31 H 1.09000 * 109.46911 * 60.00147 * 1 2 3 32 32 H 1.09006 * 109.47022 * 299.99950 * 5 3 2 33 33 H 1.08994 * 109.47391 * 59.99602 * 5 3 2 34 34 H 1.09001 * 109.46924 * 179.97438 * 5 3 2 35 35 H 1.08997 * 110.37242 * 36.99499 * 12 11 9 36 36 H 1.09000 * 110.46044 * 274.71650 * 12 11 9 37 37 H 1.08998 * 111.00208 * 278.93831 * 13 12 11 38 38 H 1.08997 * 111.03537 * 155.09203 * 13 12 11 39 39 H 1.09001 * 109.47066 * 272.88183 * 17 16 14 40 40 H 1.09000 * 109.47494 * 32.88378 * 17 16 14 41 41 H 1.08998 * 109.47352 * 152.88731 * 17 16 14 42 42 H 0.96998 * 119.99992 * 353.71520 * 21 20 18 43 43 H 1.08998 * 110.06203 * 61.76271 * 26 11 9 44 44 H 1.08997 * 109.85747 * 300.49072 * 26 11 9 45 45 H 1.07996 * 125.58670 * 179.76183 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3387 1.2638 -0.7105 7 7 3.7326 2.1275 -1.5787 8 6 4.9452 1.9176 -2.0975 9 6 5.5549 2.8036 -3.1036 10 8 6.6644 2.5583 -3.5375 11 7 4.8834 3.8862 -3.5435 12 6 3.5385 4.3001 -3.1042 13 6 3.4827 5.8236 -3.3794 14 6 4.2810 5.9299 -4.7056 15 1 3.6412 5.7079 -5.5597 16 7 4.8832 7.2583 -4.8430 17 6 5.7957 7.7591 -3.8121 18 6 4.5932 8.0320 -5.9351 19 1 4.2599 7.5686 -6.8520 20 6 4.7274 9.4117 -5.8636 21 7 4.5624 10.0303 -4.7136 22 14 5.1422 10.3906 -7.3996 23 1 6.6170 10.5029 -7.5316 24 1 4.5897 9.6987 -8.5917 25 1 4.5496 11.7483 -7.2964 26 6 5.3717 4.8500 -4.5450 27 6 5.5586 0.8126 -1.6170 28 16 4.5305 0.0637 -0.4748 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.2568 1.8013 1.9564 33 1 2.8829 1.0774 1.9563 34 1 2.6615 2.7669 1.4425 35 1 3.4091 4.1019 -2.0402 36 1 2.7728 3.7821 -3.6817 37 1 3.9730 6.3828 -2.5825 38 1 2.4546 6.1595 -3.5143 39 1 5.2219 8.2514 -3.0270 40 1 6.3545 6.9260 -3.3857 41 1 6.4897 8.4725 -4.2566 42 1 4.2582 9.5361 -3.9364 43 1 5.5384 4.3471 -5.4976 44 1 6.2980 5.3075 -4.1978 45 1 6.5381 0.4615 -1.9060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971539123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:49 Heat of formation + Delta-G solvation = -17.581315 kcal Electronic energy + Delta-G solvation = -27435.728403 eV Core-core repulsion = 23580.809105 eV Total energy + Delta-G solvation = -3854.919298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85036 -40.38230 -39.25462 -38.77408 -36.86025 -33.68650 -33.40050 -31.39740 -30.75010 -29.71622 -28.25466 -27.76599 -26.87392 -25.47420 -24.15000 -23.56317 -21.82315 -21.04550 -20.64848 -19.60350 -19.47805 -17.80641 -17.49939 -17.32393 -17.14805 -16.71470 -16.36710 -16.14276 -15.87504 -15.52815 -15.29099 -15.04552 -14.85100 -14.77725 -14.10798 -13.99448 -13.91268 -13.62020 -13.53604 -13.28152 -13.07318 -12.95036 -12.71264 -12.66936 -12.54645 -12.49784 -12.40715 -12.03613 -11.88130 -11.79269 -11.49935 -11.38765 -10.91016 -10.73933 -10.66656 -10.47983 -10.10122 -9.71936 -9.04867 -8.28268 -5.40413 -0.62098 0.16348 0.53783 0.73059 1.59742 1.65975 1.82651 1.84522 2.11422 2.31653 2.64595 3.13887 3.16461 3.41478 3.50417 3.72673 3.80617 3.99551 4.05519 4.07220 4.14078 4.20780 4.23870 4.32478 4.46130 4.52378 4.55732 4.59967 4.67598 4.73155 4.78910 4.84973 4.87268 4.92602 4.94097 5.04063 5.12638 5.18960 5.21085 5.27383 5.81463 6.03102 6.24021 6.36332 6.37626 6.88970 6.99786 7.72863 8.12298 8.97550 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002578 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.908366 B =10857.752572 C =11718.594260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.163 3.837 4 H 0.097 0.903 5 C -0.167 4.167 6 C 0.003 3.997 7 N -0.447 5.447 8 C -0.008 4.008 9 C 0.596 3.404 10 O -0.578 6.578 11 N -0.597 5.597 12 C 0.120 3.880 13 C -0.143 4.143 14 C 0.168 3.832 15 H 0.079 0.921 16 N -0.604 5.604 17 C 0.148 3.852 18 C -0.366 4.366 19 H 0.056 0.944 20 C -0.067 4.067 21 N -0.936 5.936 22 Si 1.112 2.888 23 H -0.288 1.288 24 H -0.272 1.272 25 H -0.293 1.293 26 C 0.100 3.900 27 C -0.237 4.237 28 S 0.328 5.672 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.002 0.998 40 H 0.036 0.964 41 H 0.026 0.974 42 H 0.258 0.742 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 -23.888 14.846 29.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.102 3.898 4 H 0.115 0.885 5 C -0.225 4.225 6 C -0.276 4.276 7 N -0.164 5.164 8 C -0.144 4.144 9 C 0.384 3.616 10 O -0.459 6.459 11 N -0.328 5.328 12 C -0.002 4.002 13 C -0.183 4.183 14 C 0.060 3.940 15 H 0.097 0.903 16 N -0.326 5.326 17 C 0.003 3.997 18 C -0.495 4.495 19 H 0.074 0.926 20 C -0.265 4.265 21 N -0.577 5.577 22 Si 0.937 3.063 23 H -0.214 1.214 24 H -0.197 1.197 25 H -0.220 1.220 26 C -0.025 4.025 27 C -0.380 4.380 28 S 0.587 5.413 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.758 -23.150 14.536 28.415 hybrid contribution 0.147 -0.264 -0.405 0.505 sum -7.611 -23.414 14.132 28.387 Atomic orbital electron populations 1.23053 0.78251 1.04397 1.01323 1.87855 1.22286 1.26177 1.95251 1.20391 0.87264 0.86455 0.95665 0.88509 1.22297 1.04498 1.02225 0.93499 1.27337 1.03334 0.96842 1.00062 1.66969 1.12435 1.27621 1.09401 1.19970 0.92709 0.98360 1.03330 1.17184 0.83864 0.79736 0.80853 1.90768 1.20682 1.73993 1.60492 1.48387 1.19331 1.24211 1.40886 1.22537 0.82092 0.93064 1.02487 1.23262 1.01534 0.95206 0.98339 1.21446 0.91644 0.83873 0.97061 0.90312 1.44049 1.50075 1.14551 1.23903 1.20731 0.91947 0.95968 0.91043 1.20212 1.47884 0.90784 0.90650 0.92598 1.27050 0.99086 0.95257 1.05107 1.70866 1.45633 1.38252 1.02936 0.82891 0.76650 0.74396 0.72336 1.21443 1.19746 1.21980 1.22471 0.98910 0.90086 0.91010 1.27000 1.07989 0.99451 1.03589 1.82597 1.03018 1.23940 1.31794 0.87876 0.92013 0.93440 0.89147 0.90974 0.91074 0.87526 0.90457 0.92342 0.89549 0.97958 0.94521 0.95475 0.93179 0.92119 0.92789 0.78672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 113.37 1.23 1.42 16 2 O -0.40 -5.30 10.17 -148.98 -1.51 -6.82 16 3 C 0.16 2.26 3.23 29.85 0.10 2.36 16 4 H 0.10 1.30 7.79 -2.39 -0.02 1.28 16 5 C -0.17 -1.70 9.51 71.98 0.68 -1.01 16 6 C 0.00 0.06 6.30 88.58 0.56 0.61 16 7 N -0.45 -11.08 7.33 -180.82 -1.33 -12.40 16 8 C -0.01 -0.24 6.61 40.56 0.27 0.03 16 9 C 0.60 21.41 7.83 86.62 0.68 22.09 16 10 O -0.58 -24.09 17.04 -4.11 -0.07 -24.16 16 11 N -0.60 -21.16 3.33 -815.06 -2.72 -23.88 16 12 C 0.12 3.64 6.04 86.86 0.52 4.16 16 13 C -0.14 -5.03 6.65 31.99 0.21 -4.82 16 14 C 0.17 6.97 3.43 46.18 0.16 7.12 16 15 H 0.08 3.27 7.94 -2.39 -0.02 3.25 16 16 N -0.60 -30.38 2.81 -696.16 -1.95 -32.34 16 17 C 0.15 7.33 7.80 127.77 1.00 8.32 16 18 C -0.37 -20.40 9.41 84.03 0.79 -19.61 16 19 H 0.06 3.11 7.97 -2.91 -0.02 3.09 16 20 C -0.07 -3.81 4.62 84.86 0.39 -3.42 16 21 N -0.94 -56.63 12.71 21.65 0.28 -56.35 16 22 Si 1.11 51.21 30.01 68.60 2.06 53.26 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 C 0.10 3.96 6.47 86.67 0.56 4.52 16 27 C -0.24 -5.28 10.62 67.12 0.71 -4.56 16 28 S 0.33 5.04 22.74 -56.49 -1.28 3.76 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.30 7.87 -2.39 -0.02 0.28 16 31 H 0.05 0.37 8.09 -2.39 -0.02 0.35 16 32 H 0.09 0.60 7.87 -2.38 -0.02 0.58 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.11 3.01 6.02 -2.39 -0.01 2.99 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 2.22 7.12 -2.39 -0.02 2.20 16 38 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.00 0.12 6.69 -2.39 -0.02 0.11 16 40 H 0.04 1.64 6.23 -2.39 -0.01 1.62 16 41 H 0.03 1.44 7.27 -2.39 -0.02 1.42 16 42 H 0.26 15.81 6.38 -92.71 -0.59 15.22 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 44 H 0.05 2.35 6.08 -2.39 -0.01 2.33 16 45 H 0.20 3.98 8.03 -2.91 -0.02 3.96 16 Total: -1.00 -72.08 376.99 2.51 -69.57 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.18 Total: 12.13 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 7.86 Total: 17.22 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -5.72 Total: -124.97 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -1.59 Total: -30.98 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.06 Total: 53.26 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -1.28 Total: 3.76 kcal Total: -72.08 2.51 -69.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971539123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.990 kcal (2) G-P(sol) polarization free energy of solvation -72.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds