Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99824 * 2 1 4 4 H 1.09003 * 109.47482 * 29.99706 * 3 2 1 5 5 C 1.53007 * 109.47042 * 269.99514 * 3 2 1 6 6 C 1.50705 * 109.47294 * 149.99749 * 3 2 1 7 7 N 1.29432 * 124.79933 * 44.97034 * 6 3 2 8 8 C 1.30941 * 117.35902 * 180.02562 * 7 6 3 9 9 C 1.35660 * 114.19491 * 0.02562 * 8 7 6 10 10 C 1.46685 * 126.13412 * 179.97438 * 9 8 7 11 11 O 1.21691 * 119.99798 * 5.54985 * 10 9 8 12 12 N 1.34775 * 120.00027 * 185.55121 * 10 9 8 13 13 C 1.47021 * 125.65059 * 355.17745 * 12 10 9 14 14 C 1.54319 * 107.27110 * 181.02389 * 13 12 10 15 15 C 1.55161 * 102.94265 * 22.19893 * 14 13 12 16 16 H 1.09001 * 111.03474 * 82.58249 * 15 14 13 17 17 N 1.46497 * 111.00510 * 206.41775 * 15 14 13 18 18 C 1.46500 * 119.99810 * 53.65141 * 17 15 14 19 19 C 1.36931 * 120.00020 * 233.64704 * 17 15 14 20 20 H 1.08002 * 120.00568 * 333.21480 * 19 17 15 21 21 C 1.38817 * 119.99650 * 152.94140 * 19 17 15 22 22 N 1.31618 * 119.99928 * 350.54154 * 21 19 17 23 23 Si 1.86805 * 119.99813 * 170.54873 * 21 19 17 24 24 H 1.48503 * 109.47298 * 89.99762 * 23 21 19 25 25 H 1.48501 * 109.46841 * 209.99847 * 23 21 19 26 26 H 1.48497 * 109.47198 * 329.99560 * 23 21 19 27 27 C 1.47426 * 125.64508 * 175.14346 * 12 10 9 28 28 S 1.70949 * 124.80766 * 225.28953 * 6 3 2 29 29 H 1.09001 * 109.46901 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47345 * 300.00693 * 1 2 3 31 31 H 1.09002 * 109.46763 * 60.00494 * 1 2 3 32 32 H 1.09001 * 109.46789 * 60.00335 * 5 3 2 33 33 H 1.08999 * 109.46786 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.47139 * 300.00402 * 5 3 2 35 35 H 1.08006 * 122.90276 * 180.02562 * 8 7 6 36 36 H 1.08991 * 109.88369 * 300.45191 * 13 12 10 37 37 H 1.09004 * 109.87773 * 61.45497 * 13 12 10 38 38 H 1.08999 * 110.72363 * 263.83517 * 14 13 12 39 39 H 1.09010 * 110.71822 * 140.55575 * 14 13 12 40 40 H 1.08999 * 109.47094 * 272.40976 * 18 17 15 41 41 H 1.08998 * 109.47229 * 32.41066 * 18 17 15 42 42 H 1.09001 * 109.47271 * 152.40943 * 18 17 15 43 43 H 0.97006 * 119.99875 * 180.02562 * 22 21 19 44 44 H 1.09007 * 110.36753 * 37.06848 * 27 12 10 45 45 H 1.08997 * 110.36718 * 274.74375 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.3386 1.2640 0.7105 7 7 4.2429 0.3549 0.5336 8 6 5.3468 0.4607 1.2298 9 6 5.3817 1.5355 2.0568 10 6 6.4850 1.9037 2.9506 11 8 7.5268 1.2755 2.9219 12 7 6.3448 2.9377 3.8036 13 6 5.1861 3.8399 3.8734 14 6 5.4807 4.8796 4.9751 15 6 7.0287 4.8494 5.0765 16 1 7.4834 5.4747 4.3082 17 7 7.4755 5.2544 6.4116 18 6 6.9441 4.5791 7.5980 19 6 8.3899 6.2642 6.5504 20 1 9.0918 6.4702 5.7559 21 6 8.4110 7.0267 7.7102 22 7 7.4426 6.9078 8.5937 23 14 9.8135 8.2219 8.0168 24 1 9.4669 9.5487 7.4469 25 1 10.0400 8.3548 9.4784 26 1 11.0487 7.7123 7.3689 27 6 7.3277 3.3509 4.8217 28 16 3.8613 2.4064 1.8698 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.2569 1.8013 -1.9564 33 1 2.6615 2.7669 -1.4425 34 1 2.8830 1.0773 -1.9564 35 1 6.1593 -0.2467 1.1524 36 1 5.0495 4.3427 2.9161 37 1 4.2897 3.2732 4.1255 38 1 5.0264 4.5801 5.9196 39 1 5.1332 5.8684 4.6751 40 1 6.0245 5.0711 7.9148 41 1 6.7347 3.5364 7.3594 42 1 7.6777 4.6274 8.4028 43 1 7.4572 7.4409 9.4039 44 1 8.3421 3.2256 4.4426 45 1 7.1903 2.7756 5.7372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971540214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = -18.463873 kcal Electronic energy + Delta-G solvation = -26968.110730 eV Core-core repulsion = 23113.153162 eV Total energy + Delta-G solvation = -3854.957568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47262 -40.75998 -39.14492 -38.71611 -36.62733 -33.76618 -33.36091 -31.61906 -30.89444 -29.38972 -28.05178 -27.75412 -27.03122 -25.43623 -24.06510 -23.66590 -22.22391 -21.01338 -19.90421 -19.61974 -18.95564 -17.97513 -17.67787 -17.35294 -17.02420 -16.61856 -16.29005 -16.23405 -15.87728 -15.42805 -15.19680 -15.03786 -14.91554 -14.40380 -14.29291 -14.14671 -13.94394 -13.58210 -13.56506 -13.25128 -13.12683 -12.84738 -12.74004 -12.61700 -12.49763 -12.40539 -12.17360 -12.10944 -11.98001 -11.89370 -11.54923 -11.43828 -10.92445 -10.65604 -10.62578 -10.48437 -10.18844 -9.72918 -8.74873 -7.86417 -5.37067 -0.93155 0.00481 0.41456 1.27640 1.47795 1.49771 1.58087 1.70664 1.99705 2.50593 2.79125 2.97807 3.26223 3.39319 3.46464 3.71622 3.83788 3.94822 4.05226 4.06847 4.07975 4.16553 4.22515 4.35987 4.50110 4.52885 4.59297 4.69365 4.70610 4.81498 4.85273 4.90913 4.94580 4.95336 5.06065 5.17595 5.24194 5.28475 5.38301 5.64066 5.70366 6.12297 6.26762 6.33657 6.57080 6.82411 7.13919 7.81983 8.27742 9.17968 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.002318 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.816140 B =12077.137891 C =12529.340885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.396 6.396 3 C 0.158 3.842 4 H 0.113 0.887 5 C -0.165 4.165 6 C 0.029 3.971 7 N -0.481 5.481 8 C 0.116 3.884 9 C -0.310 4.310 10 C 0.605 3.395 11 O -0.571 6.571 12 N -0.607 5.607 13 C 0.094 3.906 14 C -0.133 4.133 15 C 0.167 3.833 16 H 0.078 0.922 17 N -0.599 5.599 18 C 0.175 3.825 19 C -0.269 4.269 20 H 0.068 0.932 21 C -0.043 4.043 22 N -0.932 5.932 23 Si 0.967 3.033 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.274 1.274 27 C 0.097 3.903 28 S 0.266 5.734 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.186 0.814 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.008 0.992 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.250 0.750 44 H 0.061 0.939 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 -8.163 -17.928 26.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.315 6.315 3 C 0.097 3.903 4 H 0.131 0.869 5 C -0.224 4.224 6 C -0.245 4.245 7 N -0.195 5.195 8 C -0.043 4.043 9 C -0.435 4.435 10 C 0.394 3.606 11 O -0.453 6.453 12 N -0.339 5.339 13 C -0.030 4.030 14 C -0.173 4.173 15 C 0.058 3.942 16 H 0.096 0.904 17 N -0.320 5.320 18 C 0.031 3.969 19 C -0.399 4.399 20 H 0.086 0.914 21 C -0.239 4.239 22 N -0.577 5.577 23 Si 0.795 3.205 24 H -0.208 1.208 25 H -0.221 1.221 26 H -0.199 1.199 27 C -0.028 4.028 28 S 0.525 5.475 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.203 0.797 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.027 0.973 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.716 -8.112 -17.741 26.351 hybrid contribution 1.627 -0.038 0.608 1.738 sum -16.088 -8.149 -17.133 24.875 Atomic orbital electron populations 1.23100 0.78721 1.04163 1.01621 1.88056 1.21798 1.26535 1.95145 1.20819 0.86559 0.86706 0.96185 0.86897 1.22264 1.04150 1.02132 0.93861 1.28180 1.00713 0.95872 0.99754 1.66242 1.01251 1.26872 1.25159 1.22278 0.95677 0.95910 0.90482 1.25612 1.01996 1.05556 1.10300 1.16616 0.85741 0.79263 0.79006 1.90811 1.29566 1.54271 1.70634 1.48303 1.21511 1.29389 1.34706 1.22341 0.88054 0.91634 1.00948 1.23017 0.97576 0.98889 0.97840 1.21539 0.93559 0.91371 0.87741 0.90426 1.43907 1.48915 1.38729 1.00468 1.20525 0.96833 0.91408 0.88150 1.19474 1.08996 1.08374 1.03084 0.91379 1.25811 0.99810 0.99754 0.98560 1.70176 1.32879 1.43362 1.11292 0.85284 0.79459 0.79183 0.76537 1.20835 1.22058 1.19904 1.22747 0.92009 0.98005 0.89992 1.83799 1.05819 1.25213 1.32652 0.88790 0.92510 0.91917 0.89025 0.89951 0.92744 0.79738 0.88776 0.89175 0.90950 0.88876 0.97323 0.95777 0.95802 0.94077 0.92085 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.40 16 2 O -0.40 -6.90 10.32 -148.98 -1.54 -8.43 16 3 C 0.16 2.19 3.23 29.85 0.10 2.28 16 4 H 0.11 0.83 7.78 -2.39 -0.02 0.81 16 5 C -0.17 -1.82 9.51 71.98 0.68 -1.14 16 6 C 0.03 0.56 6.28 88.46 0.56 1.12 16 7 N -0.48 -12.10 10.49 -190.29 -2.00 -14.09 16 8 C 0.12 3.03 11.09 84.23 0.93 3.97 16 9 C -0.31 -8.09 6.40 23.88 0.15 -7.93 16 10 C 0.61 19.67 7.81 86.45 0.68 20.35 16 11 O -0.57 -22.78 17.10 -4.32 -0.07 -22.85 16 12 N -0.61 -18.60 3.33 -816.49 -2.72 -21.32 16 13 C 0.09 2.21 5.20 86.73 0.45 2.66 16 14 C -0.13 -3.94 6.51 31.78 0.21 -3.73 16 15 C 0.17 6.27 3.55 46.39 0.16 6.44 16 16 H 0.08 2.95 7.96 -2.39 -0.02 2.93 16 17 N -0.60 -28.31 2.95 -695.02 -2.05 -30.36 16 18 C 0.18 8.22 7.73 127.77 0.99 9.21 16 19 C -0.27 -14.16 9.57 84.04 0.80 -13.36 16 20 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 21 C -0.04 -2.33 5.11 84.86 0.43 -1.90 16 22 N -0.93 -52.68 10.82 21.65 0.23 -52.45 16 23 Si 0.97 43.71 29.56 68.60 2.03 45.74 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C 0.10 3.48 6.51 86.85 0.57 4.05 16 28 S 0.27 4.62 18.68 -56.49 -1.06 3.56 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.36 8.08 -2.39 -0.02 0.34 16 31 H 0.06 0.32 7.87 -2.39 -0.02 0.31 16 32 H 0.09 0.62 7.87 -2.39 -0.02 0.60 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.19 4.70 8.06 -2.91 -0.02 4.68 16 36 H 0.09 1.80 7.05 -2.39 -0.02 1.78 16 37 H 0.09 1.77 6.85 -2.38 -0.02 1.75 16 38 H 0.07 2.30 7.00 -2.39 -0.02 2.28 16 39 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 40 H 0.01 0.42 7.55 -2.39 -0.02 0.41 16 41 H 0.02 0.98 6.29 -2.39 -0.02 0.97 16 42 H 0.02 1.23 7.02 -2.39 -0.02 1.21 16 43 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 44 H 0.06 2.37 7.99 -2.38 -0.02 2.35 16 45 H 0.06 2.40 6.26 -2.39 -0.01 2.39 16 Total: -1.00 -70.28 376.23 1.77 -68.51 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.00 Total: 8.29 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 7.94 Total: 23.40 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -6.53 Total: -118.21 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.61 Total: -31.29 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.06 Total: 3.56 kcal Total: -70.28 1.77 -68.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971540214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.045 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds