Wall clock time and date at job start Sat Apr 11 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99836 * 2 1 4 4 H 1.09000 * 109.47056 * 30.00033 * 3 2 1 5 5 C 1.52997 * 109.46973 * 269.99716 * 3 2 1 6 6 C 1.50705 * 109.46874 * 149.99839 * 3 2 1 7 7 N 1.29430 * 124.80492 * 45.02563 * 6 3 2 8 8 C 1.30938 * 117.36455 * 179.97438 * 7 6 3 9 9 C 1.35665 * 114.19167 * 359.97438 * 8 7 6 10 10 C 1.46682 * 126.13285 * 179.97438 * 9 8 7 11 11 O 1.21689 * 119.99986 * 353.66107 * 10 9 8 12 12 N 1.34772 * 120.00561 * 173.66161 * 10 9 8 13 13 C 1.47472 * 125.62401 * 354.29577 * 12 10 9 14 14 C 1.54908 * 104.80966 * 204.13860 * 13 12 10 15 15 C 1.55149 * 101.61793 * 323.04157 * 14 13 12 16 16 H 1.09002 * 110.72390 * 276.94577 * 15 14 13 17 17 N 1.46505 * 110.72228 * 153.84502 * 15 14 13 18 18 C 1.46505 * 119.99869 * 300.00412 * 17 15 14 19 19 C 1.36931 * 119.99776 * 120.00110 * 17 15 14 20 20 H 1.08001 * 120.00678 * 20.65729 * 19 17 15 21 21 C 1.38816 * 119.99977 * 200.65521 * 19 17 15 22 22 N 1.31620 * 119.99720 * 12.10467 * 21 19 17 23 23 Si 1.86804 * 120.00194 * 192.10523 * 21 19 17 24 24 H 1.48499 * 109.47020 * 60.00083 * 23 21 19 25 25 H 1.48500 * 109.46949 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47079 * 299.99980 * 23 21 19 27 27 C 1.47021 * 125.65316 * 174.37770 * 12 10 9 28 28 S 1.70952 * 124.80414 * 225.29774 * 6 3 2 29 29 H 1.09002 * 109.47253 * 300.00428 * 1 2 3 30 30 H 1.09001 * 109.47375 * 59.99978 * 1 2 3 31 31 H 1.09004 * 109.47226 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46900 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.46982 * 300.00198 * 5 3 2 34 34 H 1.08993 * 109.47484 * 60.00194 * 5 3 2 35 35 H 1.08002 * 122.90842 * 180.02562 * 8 7 6 36 36 H 1.08996 * 110.35083 * 85.31751 * 13 12 10 37 37 H 1.09001 * 110.40721 * 322.98562 * 13 12 10 38 38 H 1.09000 * 111.00186 * 204.94848 * 14 13 12 39 39 H 1.09004 * 111.00526 * 81.13608 * 14 13 12 40 40 H 1.09003 * 109.46738 * 87.04429 * 18 17 15 41 41 H 1.08998 * 109.46640 * 207.03862 * 18 17 15 42 42 H 1.09000 * 109.46924 * 327.04333 * 18 17 15 43 43 H 0.97003 * 120.00279 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.88388 * 59.48740 * 27 12 10 45 45 H 1.08999 * 109.87687 * 298.32026 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 3.3386 1.2639 0.7105 7 7 4.2432 0.3555 0.5329 8 6 5.3475 0.4616 1.2285 9 6 5.3827 1.5369 2.0549 10 6 6.4864 1.9056 2.9479 11 8 7.4384 1.1591 3.0789 12 7 6.4462 3.0711 3.6235 13 6 5.4187 4.1178 3.4701 14 6 6.1107 5.4232 3.9355 15 6 6.9846 4.9117 5.1110 16 1 6.3979 4.8450 6.0272 17 7 8.1499 5.7779 5.3059 18 6 9.1192 5.9567 4.2220 19 6 8.3331 6.4205 6.5011 20 1 7.8419 6.0559 7.3912 21 6 9.1501 7.5408 6.5688 22 7 9.5559 8.1271 5.4625 23 14 9.6736 8.2160 8.2300 24 1 10.4299 7.1751 8.9714 25 1 10.5368 9.4077 8.0301 26 1 8.4698 8.6024 9.0089 27 6 7.4200 3.5101 4.6337 28 16 3.8612 2.4063 1.8700 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.6614 2.7669 -1.4425 33 1 2.8829 1.0774 -1.9562 34 1 1.2569 1.8014 -1.9564 35 1 6.1603 -0.2452 1.1505 36 1 4.5576 3.8990 4.1015 37 1 5.1138 4.2012 2.4270 38 1 5.3778 6.1519 4.2818 39 1 6.7297 5.8417 3.1418 40 1 8.7935 6.7703 3.5738 41 1 10.0954 6.1965 4.6435 42 1 9.1898 5.0363 3.6423 43 1 10.1265 8.9101 5.5097 44 1 8.4150 3.5615 4.1917 45 1 7.4207 2.8160 5.4740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971540215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:56 Heat of formation + Delta-G solvation = -14.396586 kcal Electronic energy + Delta-G solvation = -27016.573879 eV Core-core repulsion = 23161.792681 eV Total energy + Delta-G solvation = -3854.781197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47776 -40.75985 -39.15158 -38.72477 -36.63942 -33.76104 -33.35194 -31.60070 -30.90960 -29.36380 -28.09948 -27.75240 -27.02839 -25.42672 -24.04182 -23.69876 -22.29890 -20.88082 -19.93435 -19.64496 -18.96258 -17.95599 -17.72007 -17.33313 -17.03001 -16.69487 -16.35976 -16.21089 -15.77837 -15.47065 -15.19258 -15.07808 -14.93166 -14.48207 -14.19822 -14.11120 -13.93253 -13.58514 -13.39845 -13.25760 -13.12315 -12.83702 -12.74952 -12.61398 -12.51841 -12.36087 -12.28220 -12.09582 -11.97908 -11.85191 -11.60408 -11.45103 -10.92679 -10.61363 -10.58013 -10.53497 -10.14008 -9.71608 -8.84629 -7.84706 -5.29985 -0.93465 -0.00512 0.40748 1.27781 1.49303 1.52403 1.57963 1.71682 1.99518 2.51848 2.79059 2.97782 3.27194 3.38289 3.50259 3.71428 3.74247 3.93822 4.05486 4.06640 4.14579 4.19558 4.24344 4.36364 4.49862 4.50335 4.59518 4.68251 4.69386 4.81386 4.89210 4.90985 4.93154 4.94512 5.07396 5.17907 5.24301 5.32373 5.36609 5.62066 5.70908 6.12404 6.26494 6.31729 6.56903 6.82931 7.12912 7.82989 8.27259 9.20458 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026863 B = 0.002315 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.081917 B =12094.736912 C =12505.670255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.396 6.396 3 C 0.159 3.841 4 H 0.114 0.886 5 C -0.166 4.166 6 C 0.029 3.971 7 N -0.481 5.481 8 C 0.115 3.885 9 C -0.311 4.311 10 C 0.603 3.397 11 O -0.572 6.572 12 N -0.607 5.607 13 C 0.092 3.908 14 C -0.136 4.136 15 C 0.167 3.833 16 H 0.092 0.908 17 N -0.602 5.602 18 C 0.177 3.823 19 C -0.263 4.263 20 H 0.079 0.921 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.970 3.030 24 H -0.282 1.282 25 H -0.298 1.298 26 H -0.272 1.272 27 C 0.098 3.902 28 S 0.269 5.731 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.185 0.815 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.001 0.999 41 H 0.033 0.967 42 H 0.014 0.986 43 H 0.248 0.752 44 H 0.053 0.947 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.186 -10.418 -11.601 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.315 6.315 3 C 0.098 3.902 4 H 0.132 0.868 5 C -0.225 4.225 6 C -0.246 4.246 7 N -0.195 5.195 8 C -0.044 4.044 9 C -0.435 4.435 10 C 0.392 3.608 11 O -0.454 6.454 12 N -0.339 5.339 13 C -0.031 4.031 14 C -0.177 4.177 15 C 0.058 3.942 16 H 0.110 0.890 17 N -0.323 5.323 18 C 0.032 3.968 19 C -0.393 4.393 20 H 0.097 0.903 21 C -0.248 4.248 22 N -0.585 5.585 23 Si 0.799 3.201 24 H -0.208 1.208 25 H -0.224 1.224 26 H -0.197 1.197 27 C -0.027 4.027 28 S 0.528 5.472 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.202 0.798 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.019 0.981 41 H 0.052 0.948 42 H 0.033 0.967 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.078 -10.371 -11.499 26.966 hybrid contribution 1.670 -0.089 0.610 1.780 sum -20.407 -10.459 -10.888 25.385 Atomic orbital electron populations 1.23102 0.78703 1.04168 1.01636 1.88056 1.21820 1.26519 1.95143 1.20815 0.86548 0.86718 0.96136 0.86804 1.22267 1.04152 1.02119 0.93940 1.28193 1.00656 0.95520 1.00185 1.66238 1.01235 1.26767 1.25287 1.22273 0.95756 0.95770 0.90574 1.25611 1.02084 1.05459 1.10370 1.16653 0.84784 0.80283 0.79074 1.90810 1.35485 1.52495 1.66610 1.48355 1.28499 1.17277 1.39799 1.22731 0.91197 0.86503 1.02638 1.23206 0.99469 0.95972 0.99015 1.21489 0.88010 0.87214 0.97438 0.89028 1.44040 1.23035 1.52308 1.12930 1.20520 0.92846 0.94095 0.89331 1.19574 1.26689 1.05952 0.87075 0.90321 1.25734 1.01842 0.97132 1.00049 1.70232 1.39234 1.21804 1.27201 0.85293 0.78028 0.77048 0.79755 1.20831 1.22414 1.19724 1.22499 0.92320 0.97679 0.90194 1.83726 1.05478 1.24273 1.33676 0.92444 0.91951 0.88785 0.89989 0.92787 0.89004 0.79826 0.87740 0.88964 0.88261 0.92246 0.98061 0.94844 0.96730 0.94259 0.92905 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.40 -6.85 10.32 -148.98 -1.54 -8.39 16 3 C 0.16 2.18 3.23 29.85 0.10 2.28 16 4 H 0.11 0.81 7.78 -2.39 -0.02 0.79 16 5 C -0.17 -1.87 9.51 71.98 0.68 -1.18 16 6 C 0.03 0.56 6.28 88.46 0.56 1.11 16 7 N -0.48 -12.19 10.49 -190.30 -2.00 -14.19 16 8 C 0.12 3.06 11.10 84.23 0.93 4.00 16 9 C -0.31 -8.18 6.35 23.88 0.15 -8.03 16 10 C 0.60 19.88 7.80 86.45 0.67 20.55 16 11 O -0.57 -23.23 17.21 -4.31 -0.07 -23.31 16 12 N -0.61 -18.68 3.33 -816.38 -2.72 -21.40 16 13 C 0.09 2.14 5.30 86.85 0.46 2.60 16 14 C -0.14 -4.06 6.65 31.98 0.21 -3.85 16 15 C 0.17 6.13 3.45 46.18 0.16 6.29 16 16 H 0.09 3.17 7.91 -2.39 -0.02 3.15 16 17 N -0.60 -28.59 2.94 -696.13 -2.05 -30.63 16 18 C 0.18 8.69 7.93 127.77 1.01 9.71 16 19 C -0.26 -13.68 9.65 84.04 0.81 -12.86 16 20 H 0.08 3.88 7.81 -2.91 -0.02 3.86 16 21 C -0.05 -2.84 5.08 84.86 0.43 -2.41 16 22 N -0.94 -53.86 10.56 21.65 0.23 -53.63 16 23 Si 0.97 43.68 29.57 68.60 2.03 45.71 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 27 C 0.10 3.49 6.45 86.73 0.56 4.05 16 28 S 0.27 4.64 18.90 -56.49 -1.07 3.57 16 29 H 0.06 0.34 8.08 -2.39 -0.02 0.32 16 30 H 0.06 0.31 7.87 -2.39 -0.02 0.30 16 31 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 0.63 7.87 -2.39 -0.02 0.61 16 35 H 0.18 4.77 8.06 -2.91 -0.02 4.75 16 36 H 0.10 1.85 7.96 -2.39 -0.02 1.84 16 37 H 0.09 1.80 5.84 -8.96 -0.05 1.75 16 38 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.06 2.03 7.22 -2.38 -0.02 2.01 16 40 H 0.00 0.06 7.68 -2.39 -0.02 0.04 16 41 H 0.03 1.82 6.58 -2.39 -0.02 1.80 16 42 H 0.01 0.65 6.06 -2.39 -0.01 0.64 16 43 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.05 2.18 5.90 -2.39 -0.01 2.16 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -71.65 375.88 1.75 -69.90 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.96 Total: 8.72 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 7.97 Total: 23.65 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -6.53 Total: -119.85 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -1.61 Total: -31.69 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -1.07 Total: 3.57 kcal Total: -71.65 1.75 -69.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971540215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.506 kcal (2) G-P(sol) polarization free energy of solvation -71.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds