Wall clock time and date at job start Sat Apr 11 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.42906 * 114.00179 * 2 1 4 4 H 1.08996 * 109.47223 * 330.00150 * 3 2 1 5 5 C 1.53006 * 109.46771 * 89.99766 * 3 2 1 6 6 C 1.50700 * 109.47441 * 209.99653 * 3 2 1 7 7 N 1.29432 * 124.80301 * 314.98252 * 6 3 2 8 8 C 1.30945 * 117.35959 * 179.73048 * 7 6 3 9 9 C 1.35663 * 114.19097 * 0.51405 * 8 7 6 10 10 C 1.46684 * 126.12714 * 179.78853 * 9 8 7 11 11 O 1.21680 * 120.00084 * 5.58380 * 10 9 8 12 12 N 1.34783 * 119.99690 * 185.58696 * 10 9 8 13 13 C 1.47022 * 125.64673 * 355.18576 * 12 10 9 14 14 C 1.54326 * 107.26883 * 181.02886 * 13 12 10 15 15 C 1.55153 * 102.94258 * 22.19165 * 14 13 12 16 16 H 1.08999 * 111.03685 * 82.58623 * 15 14 13 17 17 N 1.46498 * 111.00665 * 206.42519 * 15 14 13 18 18 C 1.46501 * 119.99977 * 53.64930 * 17 15 14 19 19 C 1.36938 * 120.00266 * 233.65554 * 17 15 14 20 20 H 1.08003 * 119.99668 * 333.22359 * 19 17 15 21 21 C 1.38812 * 120.00361 * 152.95426 * 19 17 15 22 22 N 1.31620 * 119.99577 * 350.59163 * 21 19 17 23 23 Si 1.86800 * 119.99985 * 170.59868 * 21 19 17 24 24 H 1.48493 * 109.47243 * 59.99984 * 23 21 19 25 25 H 1.48499 * 109.46830 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46864 * 299.99264 * 23 21 19 27 27 C 1.47423 * 125.64494 * 175.15123 * 12 10 9 28 28 S 1.70953 * 124.80275 * 135.00056 * 6 3 2 29 29 H 1.09000 * 109.47604 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47533 * 300.00154 * 1 2 3 31 31 H 1.09010 * 109.47065 * 59.99993 * 1 2 3 32 32 H 1.08993 * 109.47193 * 300.00486 * 5 3 2 33 33 H 1.09005 * 109.46814 * 60.00219 * 5 3 2 34 34 H 1.09001 * 109.46969 * 180.02562 * 5 3 2 35 35 H 1.08000 * 122.90383 * 180.34608 * 8 7 6 36 36 H 1.09000 * 109.88371 * 300.44431 * 13 12 10 37 37 H 1.09001 * 109.88244 * 61.45625 * 13 12 10 38 38 H 1.09005 * 110.71905 * 263.83236 * 14 13 12 39 39 H 1.08998 * 110.72520 * 140.55916 * 14 13 12 40 40 H 1.09003 * 109.47538 * 272.44787 * 18 17 15 41 41 H 1.09002 * 109.47006 * 32.45075 * 18 17 15 42 42 H 1.09002 * 109.47031 * 152.44788 * 18 17 15 43 43 H 0.97000 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.08995 * 110.36803 * 37.06645 * 27 12 10 45 45 H 1.09003 * 110.36731 * 274.73976 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2175 1.7714 1.4426 6 6 3.3386 1.2639 -0.7103 7 7 4.2432 0.3554 -0.5327 8 6 5.3451 0.4584 -1.2326 9 6 5.3825 1.5366 -2.0552 10 6 6.4865 1.9054 -2.9478 11 8 7.4426 1.1631 -3.0718 12 7 6.4417 3.0665 -3.6308 13 6 5.3098 4.0046 -3.6525 14 6 5.7003 5.1721 -4.5833 15 6 6.8036 4.5488 -5.4785 16 1 6.3666 3.9847 -6.3025 17 7 7.7187 5.5781 -5.9776 18 6 8.3774 6.4900 -5.0390 19 6 7.9584 5.6881 -7.3213 20 1 7.8571 4.8234 -7.9604 21 6 8.3260 6.9122 -7.8629 22 7 8.2655 8.0020 -7.1274 23 14 8.9063 7.0127 -9.6357 24 1 7.8293 6.5304 -10.5372 25 1 9.2365 8.4215 -9.9693 26 1 10.1139 6.1662 -9.8099 27 6 7.5198 3.6065 -4.4790 28 16 3.8643 2.4104 -1.8644 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8901 32 1 1.2568 1.8013 1.9564 33 1 2.8828 1.0774 1.9564 34 1 2.6605 2.7673 1.4426 35 1 6.1553 -0.2520 -1.1593 36 1 4.4213 3.5046 -4.0379 37 1 5.1182 4.3777 -2.6465 38 1 6.0975 6.0081 -4.0075 39 1 4.8479 5.4874 -5.1850 40 1 7.7355 7.3524 -4.8591 41 1 8.5620 5.9719 -4.0980 42 1 9.3249 6.8243 -5.4617 43 1 8.5220 8.8575 -7.5060 44 1 8.0231 2.8000 -5.0120 45 1 8.2335 4.1664 -3.8746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971540217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:03 Heat of formation + Delta-G solvation = 2.644611 kcal Electronic energy + Delta-G solvation = -26965.741935 eV Core-core repulsion = 23111.699699 eV Total energy + Delta-G solvation = -3854.042236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36217 -39.65092 -38.36000 -37.38689 -34.91624 -32.87026 -31.80937 -30.21843 -29.77290 -28.02511 -27.21012 -26.23156 -26.07337 -24.01960 -22.88395 -22.47135 -21.14890 -19.43968 -18.99746 -18.53805 -17.15815 -17.00471 -16.46725 -16.22990 -15.97854 -15.73812 -15.32222 -14.93261 -14.50064 -14.31416 -14.04370 -13.56398 -13.52432 -13.44095 -13.14398 -12.84627 -12.67679 -12.59185 -12.48511 -12.14043 -12.09416 -11.87807 -11.46082 -11.41375 -11.00111 -10.86612 -10.58808 -10.52331 -10.38244 -10.35801 -10.07072 -10.00221 -9.98122 -9.65963 -9.63264 -9.20418 -8.63537 -8.46918 -6.83327 -5.84884 -3.34333 0.02739 0.89504 1.34335 2.31186 2.97259 3.14805 3.34103 3.39450 3.39575 3.41115 3.72711 4.31325 4.40486 4.49091 4.60685 4.80964 4.86571 4.88301 4.95221 5.07890 5.12843 5.18648 5.24187 5.29208 5.31707 5.38623 5.48724 5.64493 5.73392 5.81121 5.89441 5.91250 6.18245 6.26512 6.39147 6.53139 6.64922 6.73748 6.78618 7.26824 7.42910 7.56090 7.60296 7.72364 8.10191 8.31608 9.12557 9.72976 10.23348 11.21190 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025154 B = 0.002315 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.857839 B =12090.262964 C =12506.693152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.166 3.834 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.026 3.974 7 N -0.453 5.453 8 C 0.112 3.888 9 C -0.277 4.277 10 C 0.604 3.396 11 O -0.530 6.530 12 N -0.606 5.606 13 C 0.089 3.911 14 C -0.144 4.144 15 C 0.173 3.827 16 H 0.080 0.920 17 N -0.583 5.583 18 C 0.159 3.841 19 C -0.264 4.264 20 H 0.068 0.932 21 C 0.008 3.992 22 N -0.904 5.904 23 Si 0.908 3.092 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.086 3.914 28 S 0.198 5.802 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.189 0.811 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.024 0.976 41 H -0.002 1.002 42 H 0.054 0.946 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.928 -9.438 15.427 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.104 3.896 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.249 4.249 7 N -0.167 5.167 8 C -0.046 4.046 9 C -0.401 4.401 10 C 0.391 3.609 11 O -0.408 6.408 12 N -0.339 5.339 13 C -0.036 4.036 14 C -0.185 4.185 15 C 0.062 3.938 16 H 0.099 0.901 17 N -0.303 5.303 18 C 0.014 3.986 19 C -0.393 4.393 20 H 0.086 0.914 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.738 3.262 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.209 1.209 27 C -0.038 4.038 28 S 0.456 5.544 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.206 0.794 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.017 0.983 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.823 -9.333 15.275 23.891 hybrid contribution 0.693 -0.202 -0.771 1.056 sum -15.129 -9.535 14.504 23.025 Atomic orbital electron populations 1.22894 0.80618 1.03334 1.00161 1.88096 1.19634 1.25659 1.94930 1.20486 0.87451 0.86307 0.95318 0.89983 1.22265 1.03324 1.02264 0.94847 1.27520 1.00162 0.96592 1.00607 1.66171 1.00820 1.25461 1.24200 1.22223 0.95552 0.95862 0.90935 1.25890 1.00852 1.03620 1.09772 1.16305 0.84771 0.80525 0.79295 1.90840 1.34069 1.50461 1.65479 1.48315 1.18797 1.19597 1.47168 1.22234 0.89007 0.91739 1.00582 1.23191 1.01287 0.96166 0.97846 1.21442 0.88938 0.90063 0.93326 0.90140 1.43770 1.47611 1.35158 1.03732 1.20810 0.97491 0.91294 0.88974 1.19162 1.43089 0.93647 0.83420 0.91382 1.25130 1.00863 0.95147 0.97959 1.70029 1.50959 0.97932 1.35880 0.86289 0.78885 0.76701 0.84360 1.20803 1.21569 1.20867 1.23095 0.89795 0.97981 0.92943 1.84243 1.08999 1.26309 1.34810 0.89128 0.93686 0.93741 0.91183 0.90606 0.91068 0.79434 0.91380 0.91486 0.90132 0.90091 0.95726 0.98323 0.92722 0.93493 0.90440 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.37 -3.60 10.32 -35.23 -0.36 -3.96 16 3 C 0.17 1.40 3.23 -27.88 -0.09 1.31 16 4 H 0.08 0.49 7.78 -51.93 -0.40 0.09 16 5 C -0.17 -1.17 9.51 37.16 0.35 -0.82 16 6 C 0.03 0.29 6.28 -13.29 -0.08 0.20 16 7 N -0.45 -5.96 10.49 -11.50 -0.12 -6.08 16 8 C 0.11 1.49 11.10 -18.85 -0.21 1.29 16 9 C -0.28 -3.79 6.40 -37.09 -0.24 -4.03 16 10 C 0.60 9.98 7.81 -12.85 -0.10 9.88 16 11 O -0.53 -10.36 17.10 5.21 0.09 -10.27 16 12 N -0.61 -9.65 3.33 -172.05 -0.57 -10.22 16 13 C 0.09 1.18 5.20 -3.06 -0.02 1.16 16 14 C -0.14 -2.28 6.51 -24.90 -0.16 -2.45 16 15 C 0.17 3.31 3.55 -65.78 -0.23 3.08 16 16 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 17 N -0.58 -13.70 2.95 -171.03 -0.50 -14.21 16 18 C 0.16 3.66 7.73 59.85 0.46 4.13 16 19 C -0.26 -6.90 9.57 -15.06 -0.14 -7.05 16 20 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 21 C 0.01 0.22 5.11 -17.43 -0.09 0.13 16 22 N -0.90 -25.17 10.81 55.49 0.60 -24.57 16 23 Si 0.91 21.13 29.56 -169.99 -5.03 16.10 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.09 1.54 6.51 -2.53 -0.02 1.52 16 28 S 0.20 2.05 18.68 -107.50 -2.01 0.04 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 31 H 0.04 0.21 8.09 -51.92 -0.42 -0.21 16 32 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.19 2.32 8.06 -52.49 -0.42 1.90 16 36 H 0.07 0.80 7.03 -51.93 -0.37 0.43 16 37 H 0.07 0.78 6.88 -51.93 -0.36 0.42 16 38 H 0.08 1.35 7.00 -51.93 -0.36 0.98 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.60 7.55 -51.93 -0.39 0.21 16 41 H 0.00 -0.03 6.29 -51.93 -0.33 -0.36 16 42 H 0.05 1.39 7.01 -51.93 -0.36 1.03 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.08 1.47 7.99 -51.93 -0.42 1.06 16 45 H 0.07 1.37 6.26 -51.93 -0.32 1.04 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -31.73 376.24 -8.33 -40.06 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.62 Total: -2.17 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 0.53 Total: 9.61 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.60 Total: -55.08 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.27 Total: -14.23 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.01 Total: 0.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.73 -8.33 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971540217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.704 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds