Wall clock time and date at job start Sat Apr 11 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00229 * 2 1 4 4 H 1.08997 * 109.46925 * 29.99317 * 3 2 1 5 5 C 1.53006 * 109.46623 * 269.99653 * 3 2 1 6 6 C 1.50700 * 109.47182 * 149.99757 * 3 2 1 7 7 N 1.28641 * 124.71902 * 224.99232 * 6 3 2 8 8 C 1.33561 * 115.76756 * 179.97438 * 7 6 3 9 9 C 1.47273 * 123.14159 * 180.02562 * 8 7 6 10 10 O 1.21629 * 119.99677 * 186.17170 * 9 8 7 11 11 N 1.34777 * 119.99788 * 6.16892 * 9 8 7 12 12 C 1.48213 * 119.96498 * 185.43499 * 11 9 8 13 13 C 1.47607 * 110.03627 * 102.55163 * 12 11 9 14 14 C 1.53796 * 111.84424 * 58.43595 * 13 12 11 15 15 N 1.43463 * 107.95868 * 281.53785 * 14 13 12 16 16 C 1.36930 * 118.94020 * 273.63319 * 15 14 13 17 17 H 1.08008 * 120.00379 * 25.69507 * 16 15 14 18 18 C 1.38812 * 119.99998 * 205.69154 * 16 15 14 19 19 N 1.31619 * 120.00109 * 17.02308 * 18 16 15 20 20 Si 1.86801 * 120.00160 * 197.01529 * 18 16 15 21 21 H 1.48496 * 109.47253 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46961 * 120.00198 * 20 18 16 23 23 H 1.48500 * 109.47630 * 240.00239 * 20 18 16 24 24 C 1.48857 * 122.11809 * 93.60606 * 15 14 13 25 25 C 1.43616 * 119.97206 * 5.70874 * 11 9 8 26 26 C 1.35202 * 113.71685 * 0.02562 * 8 7 6 27 27 S 1.70768 * 124.72148 * 44.69913 * 6 3 2 28 28 H 1.09008 * 109.46963 * 60.00650 * 1 2 3 29 29 H 1.08997 * 109.47476 * 300.00602 * 1 2 3 30 30 H 1.08998 * 109.47551 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47195 * 299.99498 * 5 3 2 32 32 H 1.08997 * 109.47320 * 60.00263 * 5 3 2 33 33 H 1.09002 * 109.47078 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.32632 * 222.78321 * 12 11 9 35 35 H 1.09007 * 109.32622 * 342.24763 * 12 11 9 36 36 H 1.08993 * 109.10872 * 297.75411 * 13 12 11 37 37 H 1.09008 * 108.83846 * 178.93120 * 13 12 11 38 38 H 1.09005 * 109.76060 * 161.92074 * 14 13 12 39 39 H 1.08994 * 109.80686 * 41.18009 * 14 13 12 40 40 H 0.96998 * 120.00508 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.48073 * 200.65869 * 24 15 14 42 42 H 1.08999 * 109.48592 * 80.63436 * 24 15 14 43 43 H 1.09005 * 108.87222 * 31.42629 * 25 11 9 44 44 H 1.09001 * 108.87153 * 149.85449 * 25 11 9 45 45 H 1.07999 * 125.58919 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5137 5 6 2.2178 1.7712 -1.4426 6 6 3.3386 1.2638 0.7105 7 7 3.7326 2.1275 1.5786 8 6 4.9448 1.9171 2.0983 9 6 5.5544 2.8030 3.1044 10 8 6.7045 2.6225 3.4567 11 7 4.8378 3.8138 3.6348 12 6 5.4862 4.7774 4.5556 13 6 5.7747 6.0392 3.8461 14 6 4.4997 6.6737 3.2655 15 7 4.1640 5.9696 2.0615 16 6 4.7376 6.3630 0.8820 17 1 5.6921 6.8684 0.8877 18 6 4.0923 6.1121 -0.3212 19 7 2.8108 5.8121 -0.3306 20 14 5.0427 6.2005 -1.9269 21 1 6.4574 6.5538 -1.6460 22 1 4.9881 4.8819 -2.6077 23 1 4.4384 7.2356 -2.8036 24 6 3.2126 4.8247 2.0533 25 6 3.4453 3.9528 3.3119 26 6 5.5600 0.8147 1.6143 27 16 4.5275 0.0597 0.4803 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 2.8830 1.0773 -1.9563 32 1 1.2570 1.8013 -1.9565 33 1 2.6616 2.7668 -1.4427 34 1 4.8209 4.9773 5.3956 35 1 6.4163 4.3491 4.9296 36 1 6.4737 5.8400 3.0339 37 1 6.2330 6.7391 4.5449 38 1 4.6810 7.7246 3.0397 39 1 3.6840 6.5865 3.9832 40 1 2.3598 5.6371 -1.1714 41 1 3.3755 4.2231 1.1591 42 1 2.1900 5.2018 2.0564 43 1 3.0232 2.9629 3.1381 44 1 2.9312 4.4097 4.1575 45 1 6.5413 0.4659 1.9003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981165304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:07 Heat of formation + Delta-G solvation = 16.678295 kcal Electronic energy + Delta-G solvation = -29545.861537 eV Core-core repulsion = 25692.427848 eV Total energy + Delta-G solvation = -3853.433689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.47502 -38.82928 -37.91738 -36.84625 -34.15402 -32.65053 -32.25789 -30.76695 -29.45611 -27.47306 -26.90493 -26.11054 -25.01202 -23.54719 -23.45417 -21.49230 -20.33943 -19.67388 -19.03707 -17.87041 -16.57399 -16.37200 -16.28309 -15.83690 -15.66800 -15.32129 -14.91400 -14.58593 -14.22544 -13.94980 -13.68865 -13.41840 -13.18139 -12.88322 -12.84948 -12.64371 -12.34657 -12.24272 -12.11558 -11.80456 -11.62992 -11.57773 -11.28687 -10.98470 -10.93344 -10.73314 -10.48435 -10.18521 -10.11259 -9.90495 -9.80306 -9.65530 -9.54494 -9.23929 -9.15773 -8.68321 -8.36421 -7.91102 -6.59337 -5.72547 -3.12324 0.75024 1.45679 1.87813 2.29065 3.35885 3.38017 3.44305 3.48747 3.57748 3.83980 4.46600 4.54894 4.90571 5.13472 5.17518 5.27402 5.34711 5.35848 5.39627 5.50351 5.56482 5.58804 5.62702 5.78997 5.83769 5.84920 5.89293 5.99698 6.01126 6.27169 6.35475 6.37113 6.52442 6.60350 6.67772 6.87808 6.99261 7.03610 7.13521 7.56432 7.67317 7.78803 7.91043 8.07932 8.53429 8.65473 9.29259 9.98257 10.44018 11.34670 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009533 B = 0.006155 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.403477 B = 4548.242399 C = 5890.234992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.167 3.833 4 H 0.098 0.902 5 C -0.168 4.168 6 C 0.023 3.977 7 N -0.405 5.405 8 C 0.024 3.976 9 C 0.596 3.404 10 O -0.556 6.556 11 N -0.565 5.565 12 C 0.128 3.872 13 C -0.169 4.169 14 C 0.162 3.838 15 N -0.592 5.592 16 C -0.247 4.247 17 H 0.060 0.940 18 C 0.008 3.992 19 N -0.899 5.899 20 Si 0.887 3.113 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.170 3.830 25 C 0.081 3.919 26 C -0.237 4.237 27 S 0.219 5.781 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.249 0.751 41 H 0.095 0.905 42 H 0.032 0.968 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.089 -11.816 3.141 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.305 6.305 3 C 0.106 3.894 4 H 0.116 0.884 5 C -0.227 4.227 6 C -0.256 4.256 7 N -0.121 5.121 8 C -0.111 4.111 9 C 0.381 3.619 10 O -0.436 6.436 11 N -0.294 5.294 12 C 0.007 3.993 13 C -0.211 4.211 14 C 0.033 3.967 15 N -0.313 5.313 16 C -0.377 4.377 17 H 0.078 0.922 18 C -0.190 4.190 19 N -0.545 5.545 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.045 3.955 25 C -0.045 4.045 26 C -0.379 4.379 27 S 0.476 5.524 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.113 0.887 42 H 0.050 0.950 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.819 -12.525 2.741 13.379 hybrid contribution 0.715 1.067 -0.374 1.338 sum -3.104 -11.458 2.367 12.105 Atomic orbital electron populations 1.22806 0.80173 1.02738 1.00591 1.87851 1.20361 1.27089 1.95195 1.20282 0.88404 0.85334 0.95334 0.88416 1.22280 1.02939 1.03297 0.94166 1.26869 1.01798 0.96331 1.00600 1.67322 1.12657 1.24296 1.07815 1.20395 0.91480 0.97123 1.02148 1.17036 0.84889 0.80096 0.79842 1.90724 1.17254 1.73272 1.62320 1.47203 1.11260 1.26109 1.44844 1.20721 0.98034 0.89496 0.91067 1.21974 1.02514 0.96255 1.00307 1.20267 0.92758 0.94664 0.88972 1.43749 1.51768 1.32721 1.03096 1.19158 1.00105 1.34362 0.84105 0.92188 1.24863 0.94960 1.01754 0.97454 1.70071 1.07245 1.52402 1.24739 0.86449 0.79876 0.77249 0.84678 1.20457 1.21679 1.21805 1.21925 0.91684 0.86737 0.95182 1.22425 0.79921 1.02594 0.99516 1.26606 1.06812 1.00709 1.03795 1.82683 1.06614 1.26779 1.36302 0.93588 0.93564 0.89509 0.91982 0.91310 0.89581 0.91923 0.90370 0.91437 0.92654 0.93763 0.94949 0.94102 0.88662 0.95031 0.89241 0.93397 0.79752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.40 16 2 O -0.39 -4.87 10.16 -35.23 -0.36 -5.22 16 3 C 0.17 2.39 3.23 -27.88 -0.09 2.30 16 4 H 0.10 1.43 7.79 -51.93 -0.40 1.03 16 5 C -0.17 -2.38 9.51 37.16 0.35 -2.03 16 6 C 0.02 0.38 6.30 -13.61 -0.09 0.29 16 7 N -0.40 -7.55 5.00 -8.51 -0.04 -7.60 16 8 C 0.02 0.46 6.40 -84.52 -0.54 -0.08 16 9 C 0.60 12.47 7.63 -12.59 -0.10 12.37 16 10 O -0.56 -12.46 16.15 5.25 0.08 -12.38 16 11 N -0.57 -11.19 2.45 -177.73 -0.43 -11.62 16 12 C 0.13 2.27 5.77 -5.70 -0.03 2.24 16 13 C -0.17 -3.19 5.65 -28.92 -0.16 -3.35 16 14 C 0.16 3.40 5.63 -5.23 -0.03 3.37 16 15 N -0.59 -14.61 2.53 -172.00 -0.44 -15.05 16 16 C -0.25 -6.80 9.25 -15.06 -0.14 -6.94 16 17 H 0.06 1.69 7.89 -52.48 -0.41 1.27 16 18 C 0.01 0.21 4.88 -17.43 -0.08 0.13 16 19 N -0.90 -24.80 11.11 55.49 0.62 -24.18 16 20 Si 0.89 21.92 29.59 -169.99 -5.03 16.89 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 C 0.17 3.95 4.89 -1.75 -0.01 3.94 16 25 C 0.08 1.57 4.76 -4.58 -0.02 1.54 16 26 C -0.24 -3.83 10.62 29.65 0.31 -3.51 16 27 S 0.22 3.02 22.73 -107.50 -2.44 0.58 16 28 H 0.05 0.39 7.87 -51.92 -0.41 -0.02 16 29 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 35 H 0.08 1.39 7.08 -51.92 -0.37 1.02 16 36 H 0.07 1.50 7.91 -51.93 -0.41 1.09 16 37 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.04 0.94 8.02 -51.93 -0.42 0.53 16 39 H 0.03 0.63 7.59 -51.93 -0.39 0.23 16 40 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 41 H 0.10 2.40 4.77 -51.93 -0.25 2.15 16 42 H 0.03 0.79 7.99 -51.93 -0.42 0.38 16 43 H 0.09 1.68 5.45 -51.93 -0.28 1.40 16 44 H 0.05 0.85 7.73 -51.93 -0.40 0.45 16 45 H 0.19 2.68 8.04 -52.49 -0.42 2.26 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -31.60 369.37 -8.67 -40.26 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.66 Total: 1.08 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 0.47 Total: 11.67 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.30 Total: -58.45 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.27 Total: -17.60 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.44 Total: 0.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.60 -8.67 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981165304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.943 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds