Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00229 * 2 1 4 4 H 1.08997 * 109.46925 * 29.99317 * 3 2 1 5 5 C 1.53006 * 109.46623 * 269.99653 * 3 2 1 6 6 C 1.50700 * 109.47182 * 149.99757 * 3 2 1 7 7 N 1.28641 * 124.71902 * 224.99232 * 6 3 2 8 8 C 1.33561 * 115.76756 * 179.97438 * 7 6 3 9 9 C 1.47273 * 123.14159 * 180.02562 * 8 7 6 10 10 O 1.21629 * 119.99677 * 186.17170 * 9 8 7 11 11 N 1.34777 * 119.99788 * 6.16892 * 9 8 7 12 12 C 1.48213 * 119.96498 * 185.43499 * 11 9 8 13 13 C 1.47607 * 110.03627 * 102.55163 * 12 11 9 14 14 C 1.53796 * 111.84424 * 58.43595 * 13 12 11 15 15 N 1.43463 * 107.95868 * 281.53785 * 14 13 12 16 16 C 1.36930 * 118.94020 * 273.63319 * 15 14 13 17 17 H 1.08008 * 120.00379 * 25.69507 * 16 15 14 18 18 C 1.38812 * 119.99998 * 205.69154 * 16 15 14 19 19 N 1.31619 * 120.00109 * 17.02308 * 18 16 15 20 20 Si 1.86801 * 120.00160 * 197.01529 * 18 16 15 21 21 H 1.48496 * 109.47253 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46961 * 120.00198 * 20 18 16 23 23 H 1.48500 * 109.47630 * 240.00239 * 20 18 16 24 24 C 1.48857 * 122.11809 * 93.60606 * 15 14 13 25 25 C 1.43616 * 119.97206 * 5.70874 * 11 9 8 26 26 C 1.35202 * 113.71685 * 0.02562 * 8 7 6 27 27 S 1.70768 * 124.72148 * 44.69913 * 6 3 2 28 28 H 1.09008 * 109.46963 * 60.00650 * 1 2 3 29 29 H 1.08997 * 109.47476 * 300.00602 * 1 2 3 30 30 H 1.08998 * 109.47551 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47195 * 299.99498 * 5 3 2 32 32 H 1.08997 * 109.47320 * 60.00263 * 5 3 2 33 33 H 1.09002 * 109.47078 * 180.02562 * 5 3 2 34 34 H 1.08999 * 109.32632 * 222.78321 * 12 11 9 35 35 H 1.09007 * 109.32622 * 342.24763 * 12 11 9 36 36 H 1.08993 * 109.10872 * 297.75411 * 13 12 11 37 37 H 1.09008 * 108.83846 * 178.93120 * 13 12 11 38 38 H 1.09005 * 109.76060 * 161.92074 * 14 13 12 39 39 H 1.08994 * 109.80686 * 41.18009 * 14 13 12 40 40 H 0.96998 * 120.00508 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.48073 * 200.65869 * 24 15 14 42 42 H 1.08999 * 109.48592 * 80.63436 * 24 15 14 43 43 H 1.09005 * 108.87222 * 31.42629 * 25 11 9 44 44 H 1.09001 * 108.87153 * 149.85449 * 25 11 9 45 45 H 1.07999 * 125.58919 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5137 5 6 2.2178 1.7712 -1.4426 6 6 3.3386 1.2638 0.7105 7 7 3.7326 2.1275 1.5786 8 6 4.9448 1.9171 2.0983 9 6 5.5544 2.8030 3.1044 10 8 6.7045 2.6225 3.4567 11 7 4.8378 3.8138 3.6348 12 6 5.4862 4.7774 4.5556 13 6 5.7747 6.0392 3.8461 14 6 4.4997 6.6737 3.2655 15 7 4.1640 5.9696 2.0615 16 6 4.7376 6.3630 0.8820 17 1 5.6921 6.8684 0.8877 18 6 4.0923 6.1121 -0.3212 19 7 2.8108 5.8121 -0.3306 20 14 5.0427 6.2005 -1.9269 21 1 6.4574 6.5538 -1.6460 22 1 4.9881 4.8819 -2.6077 23 1 4.4384 7.2356 -2.8036 24 6 3.2126 4.8247 2.0533 25 6 3.4453 3.9528 3.3119 26 6 5.5600 0.8147 1.6143 27 16 4.5275 0.0597 0.4803 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 2.8830 1.0773 -1.9563 32 1 1.2570 1.8013 -1.9565 33 1 2.6616 2.7668 -1.4427 34 1 4.8209 4.9773 5.3956 35 1 6.4163 4.3491 4.9296 36 1 6.4737 5.8400 3.0339 37 1 6.2330 6.7391 4.5449 38 1 4.6810 7.7246 3.0397 39 1 3.6840 6.5865 3.9832 40 1 2.3598 5.6371 -1.1714 41 1 3.3755 4.2231 1.1591 42 1 2.1900 5.2018 2.0564 43 1 3.0232 2.9629 3.1381 44 1 2.9312 4.4097 4.1575 45 1 6.5413 0.4659 1.9003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981165304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = -2.557224 kcal Electronic energy + Delta-G solvation = -29546.695652 eV Core-core repulsion = 25692.427848 eV Total energy + Delta-G solvation = -3854.267804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.88933 -40.16771 -39.03913 -38.50399 -35.93423 -34.25338 -33.46846 -32.66231 -30.71190 -29.20606 -27.81674 -27.58888 -26.48400 -25.37833 -24.80670 -22.88688 -21.65507 -21.43903 -20.37295 -19.35444 -18.40989 -17.75918 -17.34366 -17.26837 -17.15993 -16.55866 -16.39134 -16.05635 -15.81458 -15.62386 -15.06316 -14.87296 -14.78153 -14.43045 -14.02200 -14.00486 -13.85202 -13.63392 -13.41292 -13.26853 -13.11109 -12.95282 -12.81369 -12.60341 -12.49527 -12.35473 -12.06924 -12.00548 -11.72923 -11.61429 -11.39391 -11.17887 -10.83354 -10.59584 -10.47210 -10.34993 -9.94876 -9.47864 -8.57392 -7.79552 -5.21294 -0.51821 0.26611 0.63056 0.90132 1.36512 1.40513 1.48654 2.08168 2.31501 2.40036 2.51264 3.29195 3.32332 3.62416 3.84014 3.95463 4.07437 4.10651 4.15187 4.26567 4.27467 4.34985 4.53602 4.54610 4.58971 4.61452 4.70248 4.73241 4.77530 4.83192 4.91035 4.91121 5.04291 5.13830 5.18753 5.23339 5.42463 5.48321 5.66210 5.83066 5.98455 6.05889 6.38474 6.48740 6.54937 7.11558 7.24913 8.03087 8.42076 9.24356 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009533 B = 0.006155 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.403477 B = 4548.242399 C = 5890.234992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.391 6.391 3 C 0.174 3.826 4 H 0.087 0.913 5 C -0.162 4.162 6 C -0.001 4.001 7 N -0.430 5.430 8 C -0.012 4.012 9 C 0.586 3.414 10 O -0.582 6.582 11 N -0.569 5.569 12 C 0.124 3.876 13 C -0.154 4.154 14 C 0.157 3.843 15 N -0.606 5.606 16 C -0.260 4.260 17 H 0.044 0.956 18 C -0.029 4.029 19 N -0.912 5.912 20 Si 0.934 3.066 21 H -0.284 1.284 22 H -0.288 1.288 23 H -0.288 1.288 24 C 0.179 3.821 25 C 0.095 3.905 26 C -0.240 4.240 27 S 0.306 5.694 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.026 0.974 37 H 0.089 0.911 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.249 0.751 41 H 0.075 0.925 42 H 0.007 0.993 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 -13.350 3.373 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.310 6.310 3 C 0.113 3.887 4 H 0.105 0.895 5 C -0.221 4.221 6 C -0.280 4.280 7 N -0.147 5.147 8 C -0.147 4.147 9 C 0.373 3.627 10 O -0.464 6.464 11 N -0.297 5.297 12 C 0.004 3.996 13 C -0.194 4.194 14 C 0.030 3.970 15 N -0.328 5.328 16 C -0.391 4.391 17 H 0.062 0.938 18 C -0.226 4.226 19 N -0.558 5.558 20 Si 0.764 3.236 21 H -0.210 1.210 22 H -0.214 1.214 23 H -0.215 1.215 24 C 0.054 3.946 25 C -0.031 4.031 26 C -0.382 4.382 27 S 0.564 5.436 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.045 0.955 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.025 0.975 43 H 0.115 0.885 44 H 0.088 0.912 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.335 -14.054 2.989 15.008 hybrid contribution 0.846 1.490 -0.485 1.780 sum -3.489 -12.564 2.504 13.278 Atomic orbital electron populations 1.23069 0.78345 1.04498 1.01168 1.87826 1.22275 1.25685 1.95216 1.20128 0.87704 0.86072 0.94822 0.89471 1.22203 1.04015 1.01236 0.94633 1.27258 1.03268 0.96994 1.00469 1.67243 1.12871 1.25536 1.09016 1.20330 0.92583 0.98403 1.03424 1.17423 0.84761 0.80525 0.79995 1.90684 1.18155 1.74154 1.63366 1.47344 1.11314 1.26191 1.44865 1.20892 0.98951 0.88305 0.91487 1.21766 1.00404 0.97617 0.99653 1.20425 0.94291 0.94060 0.88233 1.43954 1.51826 1.33643 1.03388 1.19232 0.99718 1.34470 0.85710 0.93783 1.25347 0.95710 1.02140 0.99420 1.70154 1.07788 1.52733 1.25093 0.85715 0.78577 0.77154 0.82122 1.20959 1.21421 1.21459 1.21704 0.89982 0.86437 0.96459 1.22189 0.80194 1.02346 0.98335 1.26942 1.07607 1.00012 1.03679 1.82309 1.03780 1.23892 1.33651 0.92674 0.93405 0.87133 0.90989 0.89247 0.93338 0.88395 0.90347 0.95515 0.89224 0.94628 0.92863 0.94172 0.90717 0.97486 0.88523 0.91195 0.78492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.63 16 2 O -0.39 -9.09 10.16 -148.98 -1.51 -10.61 16 3 C 0.17 4.85 3.23 29.85 0.10 4.95 16 4 H 0.09 2.58 7.79 -2.39 -0.02 2.56 16 5 C -0.16 -4.49 9.51 71.98 0.68 -3.80 16 6 C 0.00 -0.04 6.30 88.58 0.56 0.52 16 7 N -0.43 -16.10 5.00 -180.84 -0.90 -17.01 16 8 C -0.01 -0.46 6.40 40.56 0.26 -0.20 16 9 C 0.59 24.62 7.63 86.62 0.66 25.28 16 10 O -0.58 -26.23 16.15 -4.12 -0.07 -26.30 16 11 N -0.57 -22.22 2.45 -834.47 -2.04 -24.26 16 12 C 0.12 4.21 5.77 84.36 0.49 4.70 16 13 C -0.15 -5.65 5.65 29.18 0.16 -5.48 16 14 C 0.16 6.52 5.63 87.21 0.49 7.01 16 15 N -0.61 -30.33 2.53 -698.09 -1.77 -32.10 16 16 C -0.26 -14.68 9.25 84.03 0.78 -13.90 16 17 H 0.04 2.57 7.89 -2.91 -0.02 2.55 16 18 C -0.03 -1.64 4.88 84.86 0.41 -1.23 16 19 N -0.91 -51.32 11.11 21.65 0.24 -51.07 16 20 Si 0.93 45.79 29.59 68.60 2.03 47.82 16 21 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 24 C 0.18 8.46 4.89 86.56 0.42 8.88 16 25 C 0.09 3.62 4.76 87.55 0.42 4.04 16 26 C -0.24 -7.50 10.62 67.12 0.71 -6.79 16 27 S 0.31 7.84 22.73 -56.49 -1.28 6.56 16 28 H 0.05 0.81 7.87 -2.38 -0.02 0.79 16 29 H 0.05 0.77 8.08 -2.39 -0.02 0.76 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.09 2.04 7.87 -2.39 -0.02 2.02 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.10 2.65 8.05 -2.39 -0.02 2.63 16 35 H 0.08 2.69 7.08 -2.38 -0.02 2.67 16 36 H 0.03 1.19 7.91 -2.39 -0.02 1.17 16 37 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 38 H 0.04 1.51 8.02 -2.38 -0.02 1.49 16 39 H 0.05 1.97 7.59 -2.39 -0.02 1.96 16 40 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 41 H 0.07 3.86 4.77 -2.39 -0.01 3.85 16 42 H 0.01 0.37 7.99 -2.39 -0.02 0.35 16 43 H 0.10 3.62 5.45 -2.38 -0.01 3.61 16 44 H 0.07 2.35 7.73 -2.39 -0.02 2.33 16 45 H 0.20 5.49 8.04 -2.91 -0.02 5.47 16 Total: -1.00 -69.73 369.37 3.06 -66.67 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.00 Total: 14.70 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: 7.37 Total: 25.60 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -4.47 Total: -124.44 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.58 Total: -36.91 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: 7.84 SS G_CDS: -1.28 Total: 6.56 kcal Total: -69.73 3.06 -66.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981165304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.114 kcal (2) G-P(sol) polarization free energy of solvation -69.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds