Wall clock time and date at job start Sat Apr 11 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42900 * 114.00004 * 2 1 4 4 H 1.09001 * 109.46939 * 330.00165 * 3 2 1 5 5 C 1.53004 * 109.47107 * 90.00123 * 3 2 1 6 6 C 1.50695 * 109.46926 * 209.99869 * 3 2 1 7 7 N 1.29424 * 124.81073 * 315.04508 * 6 3 2 8 8 C 1.30944 * 117.36918 * 179.69822 * 7 6 3 9 9 C 1.35661 * 114.18914 * 0.47642 * 8 7 6 10 10 C 1.46677 * 126.13179 * 179.82661 * 9 8 7 11 11 O 1.21685 * 119.99941 * 43.80476 * 10 9 8 12 12 N 1.34778 * 120.00049 * 223.80409 * 10 9 8 13 13 C 1.46916 * 120.63087 * 356.38753 * 12 10 9 14 14 C 1.53200 * 108.77552 * 126.36907 * 13 12 10 15 15 C 1.53042 * 109.30922 * 54.63580 * 14 13 12 16 16 C 1.53041 * 109.53847 * 298.63561 * 15 14 13 17 17 H 1.09004 * 109.49649 * 301.38378 * 16 15 14 18 18 N 1.46495 * 109.49513 * 181.32023 * 16 15 14 19 19 C 1.36940 * 120.00077 * 154.99844 * 18 16 15 20 20 H 1.08003 * 119.99460 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00501 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99449 * 359.72442 * 21 19 18 23 23 Si 1.86790 * 120.00183 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47256 * 90.00134 * 23 21 19 25 25 H 1.48507 * 109.47153 * 210.00090 * 23 21 19 26 26 H 1.48497 * 109.47416 * 330.00055 * 23 21 19 27 27 C 1.46929 * 120.62998 * 176.36716 * 12 10 9 28 28 S 1.70958 * 124.80267 * 135.00187 * 6 3 2 29 29 H 1.09003 * 109.46964 * 59.99784 * 1 2 3 30 30 H 1.08994 * 109.46814 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46660 * 299.99843 * 1 2 3 32 32 H 1.09006 * 109.47181 * 300.00315 * 5 3 2 33 33 H 1.08999 * 109.46900 * 59.99481 * 5 3 2 34 34 H 1.08989 * 109.47116 * 179.97438 * 5 3 2 35 35 H 1.08003 * 122.90489 * 180.30404 * 8 7 6 36 36 H 1.09003 * 109.58951 * 6.58490 * 13 12 10 37 37 H 1.09004 * 109.58695 * 246.15570 * 13 12 10 38 38 H 1.08997 * 109.49491 * 294.68449 * 14 13 12 39 39 H 1.08999 * 109.52565 * 174.60084 * 14 13 12 40 40 H 1.09000 * 109.46002 * 178.61572 * 15 14 13 41 41 H 1.08999 * 109.44889 * 58.64902 * 15 14 13 42 42 H 0.96998 * 120.00398 * 334.99581 * 18 16 15 43 43 H 0.97000 * 119.99680 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.59056 * 113.84204 * 27 12 10 45 45 H 1.09005 * 109.58344 * 353.41675 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2178 1.7714 1.4425 6 6 3.3387 1.2638 -0.7104 7 7 4.2428 0.3548 -0.5337 8 6 5.3445 0.4574 -1.2340 9 6 5.3819 1.5355 -2.0566 10 6 6.4852 1.9036 -2.9503 11 8 7.0346 1.0506 -3.6219 12 7 6.8904 3.1867 -3.0275 13 6 6.1867 4.2401 -2.2834 14 6 7.2052 5.0106 -1.4373 15 6 8.3292 5.5231 -2.3407 16 6 9.0423 4.3367 -2.9934 17 1 9.4422 3.6819 -2.2192 18 7 10.1381 4.8268 -3.8333 19 6 11.2091 4.0171 -4.1028 20 1 11.2457 3.0171 -3.6964 21 6 12.2471 4.4812 -4.8990 22 7 12.1994 5.6977 -5.3994 23 14 13.7077 3.3765 -5.2671 24 1 13.4398 2.5969 -6.5024 25 1 14.9218 4.2093 -5.4610 26 1 13.9226 2.4450 -4.1308 27 6 8.0447 3.5586 -3.8571 28 16 3.8643 2.4103 -1.8645 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.2569 1.8014 1.9564 33 1 2.8830 1.0774 1.9563 34 1 2.6615 2.7668 1.4425 35 1 6.1545 -0.2533 -1.1609 36 1 5.4374 3.7894 -1.6325 37 1 5.7032 4.9214 -2.9836 38 1 7.6218 4.3491 -0.6778 39 1 6.7132 5.8549 -0.9543 40 1 9.0426 6.0927 -1.7452 41 1 7.9085 6.1646 -3.1150 42 1 10.1050 5.7247 -4.1985 43 1 12.9249 6.0221 -5.9555 44 1 7.7129 4.1843 -4.6856 45 1 8.5214 2.6581 -4.2446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999161100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:01 Heat of formation + Delta-G solvation = -14.451533 kcal Electronic energy + Delta-G solvation = -27068.203306 eV Core-core repulsion = 23213.419726 eV Total energy + Delta-G solvation = -3854.783580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48292 -39.67599 -38.36854 -37.29606 -34.57303 -32.92022 -32.36359 -31.29098 -30.12225 -28.28543 -27.28758 -26.41628 -25.07856 -24.08987 -23.08421 -21.99029 -21.50765 -19.87689 -19.04196 -18.53613 -17.14447 -17.12424 -16.64550 -16.38681 -15.78613 -15.60508 -15.32829 -14.79963 -14.53242 -14.38312 -14.17861 -13.97795 -13.59388 -13.48347 -13.44316 -13.11286 -12.80937 -12.78143 -12.54472 -12.36590 -12.16216 -11.85747 -11.48952 -11.45997 -11.17163 -10.86941 -10.78288 -10.65336 -10.43880 -10.23639 -10.05455 -9.89397 -9.81611 -9.71779 -9.45240 -9.16517 -9.09607 -8.45757 -7.03933 -5.81307 -3.11449 0.05922 0.76859 1.22542 2.35951 2.87299 3.15046 3.36584 3.44217 3.49752 3.51178 3.68350 4.26943 4.44539 4.55575 4.56959 4.76247 4.79944 4.84776 4.91714 4.98718 5.10256 5.15436 5.17993 5.26173 5.28580 5.42843 5.46077 5.53243 5.70780 5.73920 5.82832 5.86966 5.95903 6.10076 6.14363 6.28322 6.40908 6.60997 6.62043 6.75820 6.93052 7.38243 7.48683 7.69467 8.15053 8.36714 9.48713 10.01681 10.37029 11.40768 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.002406 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.602789 B =11636.467241 C =12213.505680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.167 3.833 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.032 3.968 7 N -0.446 5.446 8 C 0.104 3.896 9 C -0.270 4.270 10 C 0.587 3.413 11 O -0.520 6.520 12 N -0.596 5.596 13 C 0.095 3.905 14 C -0.127 4.127 15 C -0.126 4.126 16 C 0.168 3.832 17 H 0.052 0.948 18 N -0.717 5.717 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.093 3.907 28 S 0.187 5.813 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.187 0.813 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.066 0.934 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.242 -2.918 13.309 29.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.105 3.895 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.244 4.244 7 N -0.160 5.160 8 C -0.052 4.052 9 C -0.394 4.394 10 C 0.372 3.628 11 O -0.397 6.397 12 N -0.329 5.329 13 C -0.029 4.029 14 C -0.166 4.166 15 C -0.165 4.165 16 C 0.057 3.943 17 H 0.070 0.930 18 N -0.357 5.357 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.030 4.030 28 S 0.444 5.556 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.204 0.796 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.243 -3.161 12.855 29.393 hybrid contribution 1.278 -0.680 -0.381 1.497 sum -24.965 -3.840 12.474 28.171 Atomic orbital electron populations 1.22897 0.80586 1.03377 1.00130 1.88106 1.19650 1.25602 1.94921 1.20478 0.87342 0.86343 0.95329 0.90035 1.22267 1.03362 1.02302 0.94769 1.27342 1.00312 0.96167 1.00566 1.66103 1.00762 1.24908 1.24209 1.22165 0.95752 0.95713 0.91616 1.25918 1.01152 1.03076 1.09261 1.16830 0.81699 0.82951 0.81328 1.90871 1.56504 1.48907 1.43465 1.48195 1.31908 1.05793 1.46968 1.22098 0.95024 0.90286 0.95455 1.21860 0.96741 0.99755 0.98253 1.21837 0.96990 0.98800 0.98849 1.20494 0.88012 0.93392 0.92426 0.92974 1.42370 1.18370 1.16181 1.58814 1.19270 0.96567 0.96252 1.25430 0.91005 1.24757 0.98954 0.96705 1.00226 1.69664 1.33628 1.16366 1.38269 0.86177 0.82185 0.79503 0.78276 1.21559 1.21753 1.20653 1.22920 0.84702 1.01700 0.93726 1.83937 1.08830 1.26057 1.36792 0.93780 0.89097 0.93654 0.91172 0.90532 0.91025 0.79603 0.90454 0.90740 0.91469 0.90732 0.91165 0.91894 0.78007 0.93436 0.91613 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.46 10.32 -35.23 -0.36 -3.82 16 3 C 0.17 1.31 3.23 -27.88 -0.09 1.22 16 4 H 0.08 0.43 7.78 -51.93 -0.40 0.03 16 5 C -0.17 -1.06 9.51 37.16 0.35 -0.71 16 6 C 0.03 0.33 6.28 -13.30 -0.08 0.25 16 7 N -0.45 -5.73 10.49 -11.50 -0.12 -5.85 16 8 C 0.10 1.37 11.30 -18.85 -0.21 1.15 16 9 C -0.27 -3.62 5.53 -37.10 -0.21 -3.82 16 10 C 0.59 9.74 7.57 -12.85 -0.10 9.64 16 11 O -0.52 -10.66 16.51 5.20 0.09 -10.58 16 12 N -0.60 -9.22 2.97 -174.31 -0.52 -9.74 16 13 C 0.10 1.11 5.91 -3.71 -0.02 1.08 16 14 C -0.13 -1.48 6.08 -26.61 -0.16 -1.64 16 15 C -0.13 -1.91 5.35 -26.69 -0.14 -2.05 16 16 C 0.17 3.26 2.92 -67.82 -0.20 3.06 16 17 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 18 N -0.72 -17.51 5.12 -53.31 -0.27 -17.78 16 19 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 20 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 23 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 27 C 0.09 1.74 6.01 -3.71 -0.02 1.72 16 28 S 0.19 1.80 19.98 -107.50 -2.15 -0.35 16 29 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.17 7.87 -51.93 -0.41 -0.24 16 32 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.37 8.14 -51.94 -0.42 -0.05 16 35 H 0.19 2.29 8.06 -52.48 -0.42 1.87 16 36 H 0.08 0.77 3.95 -29.85 -0.12 0.66 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.39 9.89 7.80 -40.82 -0.32 9.57 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 2.03 7.02 -51.93 -0.36 1.67 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -33.89 381.20 -8.56 -42.45 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.64 Total: 5.51 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.03 Total: 3.86 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.19 Total: -60.41 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.28 Total: -14.40 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.15 Total: -0.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.89 -8.56 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999161100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.002 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds