Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42900 * 114.00004 * 2 1 4 4 H 1.09001 * 109.46939 * 330.00165 * 3 2 1 5 5 C 1.53004 * 109.47107 * 90.00123 * 3 2 1 6 6 C 1.50695 * 109.46926 * 209.99869 * 3 2 1 7 7 N 1.29424 * 124.81073 * 315.04508 * 6 3 2 8 8 C 1.30944 * 117.36918 * 179.69822 * 7 6 3 9 9 C 1.35661 * 114.18914 * 0.47642 * 8 7 6 10 10 C 1.46677 * 126.13179 * 179.82661 * 9 8 7 11 11 O 1.21685 * 119.99941 * 43.80476 * 10 9 8 12 12 N 1.34778 * 120.00049 * 223.80409 * 10 9 8 13 13 C 1.46916 * 120.63087 * 356.38753 * 12 10 9 14 14 C 1.53200 * 108.77552 * 126.36907 * 13 12 10 15 15 C 1.53042 * 109.30922 * 54.63580 * 14 13 12 16 16 C 1.53041 * 109.53847 * 298.63561 * 15 14 13 17 17 H 1.09004 * 109.49649 * 301.38378 * 16 15 14 18 18 N 1.46495 * 109.49513 * 181.32023 * 16 15 14 19 19 C 1.36940 * 120.00077 * 154.99844 * 18 16 15 20 20 H 1.08003 * 119.99460 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00501 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99449 * 359.72442 * 21 19 18 23 23 Si 1.86790 * 120.00183 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47256 * 90.00134 * 23 21 19 25 25 H 1.48507 * 109.47153 * 210.00090 * 23 21 19 26 26 H 1.48497 * 109.47416 * 330.00055 * 23 21 19 27 27 C 1.46929 * 120.62998 * 176.36716 * 12 10 9 28 28 S 1.70958 * 124.80267 * 135.00187 * 6 3 2 29 29 H 1.09003 * 109.46964 * 59.99784 * 1 2 3 30 30 H 1.08994 * 109.46814 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46660 * 299.99843 * 1 2 3 32 32 H 1.09006 * 109.47181 * 300.00315 * 5 3 2 33 33 H 1.08999 * 109.46900 * 59.99481 * 5 3 2 34 34 H 1.08989 * 109.47116 * 179.97438 * 5 3 2 35 35 H 1.08003 * 122.90489 * 180.30404 * 8 7 6 36 36 H 1.09003 * 109.58951 * 6.58490 * 13 12 10 37 37 H 1.09004 * 109.58695 * 246.15570 * 13 12 10 38 38 H 1.08997 * 109.49491 * 294.68449 * 14 13 12 39 39 H 1.08999 * 109.52565 * 174.60084 * 14 13 12 40 40 H 1.09000 * 109.46002 * 178.61572 * 15 14 13 41 41 H 1.08999 * 109.44889 * 58.64902 * 15 14 13 42 42 H 0.96998 * 120.00398 * 334.99581 * 18 16 15 43 43 H 0.97000 * 119.99680 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.59056 * 113.84204 * 27 12 10 45 45 H 1.09005 * 109.58344 * 353.41675 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2178 1.7714 1.4425 6 6 3.3387 1.2638 -0.7104 7 7 4.2428 0.3548 -0.5337 8 6 5.3445 0.4574 -1.2340 9 6 5.3819 1.5355 -2.0566 10 6 6.4852 1.9036 -2.9503 11 8 7.0346 1.0506 -3.6219 12 7 6.8904 3.1867 -3.0275 13 6 6.1867 4.2401 -2.2834 14 6 7.2052 5.0106 -1.4373 15 6 8.3292 5.5231 -2.3407 16 6 9.0423 4.3367 -2.9934 17 1 9.4422 3.6819 -2.2192 18 7 10.1381 4.8268 -3.8333 19 6 11.2091 4.0171 -4.1028 20 1 11.2457 3.0171 -3.6964 21 6 12.2471 4.4812 -4.8990 22 7 12.1994 5.6977 -5.3994 23 14 13.7077 3.3765 -5.2671 24 1 13.4398 2.5969 -6.5024 25 1 14.9218 4.2093 -5.4610 26 1 13.9226 2.4450 -4.1308 27 6 8.0447 3.5586 -3.8571 28 16 3.8643 2.4103 -1.8645 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.2569 1.8014 1.9564 33 1 2.8830 1.0774 1.9563 34 1 2.6615 2.7668 1.4425 35 1 6.1545 -0.2533 -1.1609 36 1 5.4374 3.7894 -1.6325 37 1 5.7032 4.9214 -2.9836 38 1 7.6218 4.3491 -0.6778 39 1 6.7132 5.8549 -0.9543 40 1 9.0426 6.0927 -1.7452 41 1 7.9085 6.1646 -3.1150 42 1 10.1050 5.7247 -4.1985 43 1 12.9249 6.0221 -5.9555 44 1 7.7129 4.1843 -4.6856 45 1 8.5214 2.6581 -4.2446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999161100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = -38.894738 kcal Electronic energy + Delta-G solvation = -27069.263243 eV Core-core repulsion = 23213.419726 eV Total energy + Delta-G solvation = -3855.843517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59910 -40.72044 -39.06273 -38.64122 -36.29883 -34.09626 -33.47550 -32.81866 -31.21245 -29.83100 -27.83994 -27.23599 -26.19664 -25.94438 -23.92108 -23.34833 -22.62175 -21.19947 -19.95150 -19.62274 -19.13946 -18.11796 -17.66270 -17.11568 -16.91403 -16.63863 -16.34339 -16.11801 -15.80031 -15.53554 -15.46462 -15.25152 -15.07236 -14.86040 -14.15694 -14.10478 -13.98794 -13.79277 -13.58963 -13.25423 -13.13371 -12.92974 -12.80612 -12.60289 -12.55907 -12.25512 -12.16605 -11.97088 -11.95249 -11.79488 -11.42544 -11.38545 -11.11504 -10.94197 -10.59124 -10.45366 -10.00542 -9.84267 -9.05190 -8.00064 -5.29186 -0.86595 -0.10859 0.32862 1.32716 1.43656 1.45596 1.53371 1.66650 1.96635 2.52177 2.79384 2.97162 3.32347 3.37049 3.66613 3.71531 3.96175 3.97537 4.04961 4.06632 4.10007 4.16542 4.26042 4.33498 4.49970 4.50204 4.59583 4.66872 4.71722 4.80611 4.81828 4.83555 4.91158 4.93392 4.98652 5.09878 5.27350 5.32257 5.38383 5.41895 5.50994 6.12597 6.20022 6.22716 6.55509 6.86828 7.29789 8.01115 8.26812 9.22290 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.002406 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.602789 B =11636.467241 C =12213.505680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.398 6.398 3 C 0.159 3.841 4 H 0.115 0.885 5 C -0.165 4.165 6 C 0.034 3.966 7 N -0.476 5.476 8 C 0.105 3.895 9 C -0.306 4.306 10 C 0.586 3.414 11 O -0.574 6.574 12 N -0.594 5.594 13 C 0.090 3.910 14 C -0.118 4.118 15 C -0.118 4.118 16 C 0.166 3.834 17 H 0.032 0.968 18 N -0.727 5.727 19 C -0.246 4.246 20 H 0.065 0.935 21 C -0.067 4.067 22 N -0.962 5.962 23 Si 0.967 3.033 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.274 1.274 27 C 0.108 3.892 28 S 0.268 5.732 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.180 0.820 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.379 0.621 43 H 0.253 0.747 44 H 0.068 0.932 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.414 -1.573 14.893 33.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.317 6.317 3 C 0.098 3.902 4 H 0.133 0.867 5 C -0.224 4.224 6 C -0.241 4.241 7 N -0.190 5.190 8 C -0.052 4.052 9 C -0.430 4.430 10 C 0.373 3.627 11 O -0.455 6.455 12 N -0.325 5.325 13 C -0.032 4.032 14 C -0.157 4.157 15 C -0.156 4.156 16 C 0.057 3.943 17 H 0.050 0.950 18 N -0.367 5.367 19 C -0.377 4.377 20 H 0.083 0.917 21 C -0.260 4.260 22 N -0.611 5.611 23 Si 0.796 3.204 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.199 1.199 27 C -0.017 4.017 28 S 0.527 5.473 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.197 0.803 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.212 0.788 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -29.482 -1.798 14.487 32.899 hybrid contribution 2.088 -1.125 -0.797 2.502 sum -27.394 -2.922 13.690 30.764 Atomic orbital electron populations 1.23099 0.78690 1.04128 1.01664 1.88063 1.21832 1.26653 1.95150 1.20840 0.86388 0.86689 0.96296 0.86735 1.22271 1.04172 1.02318 0.93639 1.28052 1.00750 0.95452 0.99824 1.66175 1.01153 1.26496 1.25194 1.22175 0.96009 0.95486 0.91577 1.25594 1.02592 1.04954 1.09893 1.17226 0.81975 0.82537 0.80969 1.90832 1.58531 1.50372 1.45783 1.48188 1.30988 1.06667 1.46700 1.22462 0.95192 0.89582 0.96004 1.21856 0.95499 1.01049 0.97293 1.21745 0.97765 0.96722 0.99381 1.20657 0.87230 0.95092 0.91359 0.94971 1.42485 1.19153 1.15574 1.59511 1.19503 0.97465 0.96217 1.24554 0.91709 1.25469 1.01557 0.98101 1.00851 1.69784 1.34316 1.17736 1.39311 0.85246 0.79254 0.77939 0.77974 1.21645 1.21535 1.19939 1.22373 0.85752 0.99574 0.93980 1.83481 1.05116 1.23869 1.34864 0.92477 0.88927 0.91797 0.89058 0.92825 0.89539 0.80298 0.88442 0.88238 0.92044 0.86392 0.91600 0.90905 0.78822 0.93807 0.91422 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.82 113.37 1.23 1.39 16 2 O -0.40 -6.66 10.32 -148.98 -1.54 -8.19 16 3 C 0.16 1.99 3.23 29.85 0.10 2.09 16 4 H 0.12 0.65 7.78 -2.39 -0.02 0.63 16 5 C -0.17 -1.57 9.51 71.98 0.68 -0.88 16 6 C 0.03 0.63 6.28 88.46 0.56 1.19 16 7 N -0.48 -11.83 10.49 -190.30 -2.00 -13.83 16 8 C 0.11 2.79 11.30 84.23 0.95 3.74 16 9 C -0.31 -8.00 5.53 23.88 0.13 -7.87 16 10 C 0.59 19.81 7.57 86.45 0.65 20.47 16 11 O -0.57 -24.94 16.51 -4.30 -0.07 -25.01 16 12 N -0.59 -18.15 2.97 -823.62 -2.45 -20.60 16 13 C 0.09 1.80 5.91 86.37 0.51 2.31 16 14 C -0.12 -2.37 6.08 30.68 0.19 -2.18 16 15 C -0.12 -3.38 5.35 30.62 0.16 -3.21 16 16 C 0.17 6.57 2.92 45.07 0.13 6.71 16 17 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 18 N -0.73 -36.47 5.12 -322.58 -1.65 -38.13 16 19 C -0.25 -13.97 9.93 84.03 0.83 -13.13 16 20 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 22 N -0.96 -58.42 13.06 21.65 0.28 -58.13 16 23 Si 0.97 47.43 29.55 68.60 2.03 49.46 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 27 C 0.11 4.15 6.01 86.36 0.52 4.67 16 28 S 0.27 4.31 19.98 -56.49 -1.13 3.18 16 29 H 0.06 0.30 8.09 -2.39 -0.02 0.29 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.27 7.87 -2.39 -0.02 0.25 16 32 H 0.09 0.49 7.87 -2.38 -0.02 0.47 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.18 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.10 1.57 3.95 -16.42 -0.06 1.51 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.38 19.85 7.80 -92.71 -0.72 19.12 16 43 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.05 2.44 7.02 -2.38 -0.02 2.42 16 Total: -1.00 -77.92 381.20 0.82 -77.10 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.23 Total: 22.29 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 7.11 Total: 11.86 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -5.81 Total: -130.69 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.61 Total: -33.20 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.13 Total: 3.18 kcal Total: -77.92 0.82 -77.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999161100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.202 kcal (2) G-P(sol) polarization free energy of solvation -77.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds