Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99756 * 2 1 4 4 H 1.09003 * 109.47204 * 330.00041 * 3 2 1 5 5 C 1.53001 * 109.47191 * 89.99910 * 3 2 1 6 6 C 1.50699 * 109.47135 * 209.99657 * 3 2 1 7 7 N 1.29424 * 124.80166 * 314.98108 * 6 3 2 8 8 C 1.30953 * 117.35999 * 179.72799 * 7 6 3 9 9 C 1.35656 * 114.18986 * 0.52387 * 8 7 6 10 10 C 1.46680 * 126.13109 * 179.79127 * 9 8 7 11 11 O 1.21686 * 120.00544 * 147.56839 * 10 9 8 12 12 N 1.34787 * 119.99810 * 327.57262 * 10 9 8 13 13 C 1.46921 * 120.62765 * 353.79290 * 12 10 9 14 14 C 1.53194 * 108.77616 * 233.63384 * 13 12 10 15 15 C 1.53041 * 109.31079 * 305.36519 * 14 13 12 16 16 C 1.53044 * 109.53809 * 61.36196 * 15 14 13 17 17 H 1.08996 * 109.49505 * 58.58901 * 16 15 14 18 18 N 1.46507 * 109.52276 * 178.66916 * 16 15 14 19 19 C 1.36935 * 119.99623 * 204.85621 * 18 16 15 20 20 H 1.07996 * 120.00125 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99887 * 180.02562 * 19 18 16 22 22 N 1.31616 * 119.99687 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00019 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46918 * 89.99951 * 23 21 19 25 25 H 1.48497 * 109.47037 * 209.99748 * 23 21 19 26 26 H 1.48493 * 109.47186 * 330.00002 * 23 21 19 27 27 C 1.46925 * 120.63137 * 173.81388 * 12 10 9 28 28 S 1.70951 * 124.80553 * 134.99963 * 6 3 2 29 29 H 1.08999 * 109.46991 * 300.00323 * 1 2 3 30 30 H 1.08998 * 109.47095 * 60.00157 * 1 2 3 31 31 H 1.08999 * 109.46695 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47150 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.47272 * 300.00230 * 5 3 2 34 34 H 1.09006 * 109.47271 * 59.99564 * 5 3 2 35 35 H 1.08001 * 122.90356 * 180.34657 * 8 7 6 36 36 H 1.08995 * 109.59006 * 113.84580 * 13 12 10 37 37 H 1.09000 * 109.70663 * 353.48419 * 13 12 10 38 38 H 1.08998 * 109.50368 * 185.41794 * 14 13 12 39 39 H 1.09000 * 109.52479 * 65.33056 * 14 13 12 40 40 H 1.09005 * 109.46095 * 301.34843 * 15 14 13 41 41 H 1.08997 * 109.46509 * 181.38419 * 15 14 13 42 42 H 0.96995 * 119.99923 * 24.85224 * 18 16 15 43 43 H 0.97006 * 119.99494 * 179.97438 * 22 21 19 44 44 H 1.09005 * 109.58425 * 6.58526 * 27 12 10 45 45 H 1.08994 * 109.58380 * 246.15588 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3387 1.2639 -0.7103 7 7 4.2432 0.3555 -0.5327 8 6 5.3452 0.4584 -1.2327 9 6 5.3826 1.5366 -2.0551 10 6 6.4865 1.9054 -2.9479 11 8 6.2543 2.4629 -4.0043 12 7 7.7580 1.6267 -2.5981 13 6 8.0660 1.0785 -1.2703 14 6 9.1276 1.9612 -0.6065 15 6 10.3391 2.0799 -1.5340 16 6 9.9150 2.7398 -2.8481 17 1 9.4929 3.7233 -2.6417 18 7 11.0813 2.8821 -3.7233 19 6 11.0982 3.8530 -4.6889 20 1 10.2520 4.5139 -4.8050 21 6 12.2030 3.9875 -5.5185 22 7 13.2344 3.1823 -5.3766 23 14 12.2258 5.3114 -6.8362 24 1 12.8061 6.5581 -6.2753 25 1 13.0505 4.8539 -7.9832 26 1 10.8391 5.5747 -7.2974 27 6 8.8623 1.8659 -3.5373 28 16 3.8643 2.4103 -1.8645 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.6614 2.7670 1.4425 33 1 1.2568 1.8014 1.9564 34 1 2.8829 1.0775 1.9564 35 1 6.1554 -0.2520 -1.1593 36 1 8.4479 0.0629 -1.3739 37 1 7.1641 1.0691 -0.6583 38 1 9.4353 1.5125 0.3380 39 1 8.7133 2.9521 -0.4207 40 1 10.7384 1.0865 -1.7389 41 1 11.1062 2.6874 -1.0537 42 1 11.8414 2.2888 -3.6187 43 1 14.0063 3.2762 -5.9566 44 1 8.4848 2.3781 -4.4223 45 1 9.3091 0.9145 -3.8257 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999161103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = -10.669856 kcal Electronic energy + Delta-G solvation = -27000.612791 eV Core-core repulsion = 23145.993197 eV Total energy + Delta-G solvation = -3854.619594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.65770 -39.56883 -38.33134 -37.30249 -34.58859 -32.99159 -32.30572 -31.27181 -30.17026 -28.09137 -27.29040 -26.46191 -25.05093 -24.01630 -23.16325 -21.93907 -21.43968 -20.00390 -19.30228 -18.21018 -17.30609 -17.10591 -16.56584 -16.01412 -15.74985 -15.67001 -15.31730 -14.90914 -14.53392 -14.33559 -14.11749 -13.80932 -13.59227 -13.52165 -13.41226 -13.09058 -12.83679 -12.75573 -12.42808 -12.33639 -12.15144 -11.81376 -11.49355 -11.34427 -11.07668 -10.85620 -10.69508 -10.61325 -10.48224 -10.22161 -10.10152 -9.86473 -9.79502 -9.69587 -9.57690 -9.14648 -9.09980 -8.42630 -7.02519 -5.80287 -3.10198 0.02259 0.81422 1.34553 2.28023 3.03043 3.14692 3.36930 3.44154 3.49699 3.52179 3.67208 4.27623 4.46918 4.56841 4.57863 4.70272 4.85181 4.86192 4.92569 4.96329 5.06459 5.15548 5.22802 5.26130 5.28409 5.45078 5.49806 5.56695 5.68157 5.76538 5.77846 5.87447 5.98759 6.12988 6.17800 6.31129 6.43818 6.61678 6.65251 6.78532 6.95424 7.37578 7.49043 7.70601 8.18226 8.37790 9.49733 10.03021 10.38464 11.41804 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.002368 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.741647 B =11820.661928 C =12471.587028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.167 3.833 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.026 3.974 7 N -0.448 5.448 8 C 0.078 3.922 9 C -0.273 4.273 10 C 0.586 3.414 11 O -0.531 6.531 12 N -0.590 5.590 13 C 0.091 3.909 14 C -0.129 4.129 15 C -0.127 4.127 16 C 0.169 3.831 17 H 0.052 0.948 18 N -0.717 5.717 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.093 3.907 28 S 0.230 5.770 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.188 0.812 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.093 0.907 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.747 -5.818 16.299 29.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.106 3.894 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.249 4.249 7 N -0.162 5.162 8 C -0.080 4.080 9 C -0.398 4.398 10 C 0.371 3.629 11 O -0.409 6.409 12 N -0.323 5.323 13 C -0.032 4.032 14 C -0.167 4.167 15 C -0.165 4.165 16 C 0.057 3.943 17 H 0.070 0.930 18 N -0.358 5.358 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.031 4.031 28 S 0.488 5.512 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.205 0.795 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.334 -5.021 15.525 29.298 hybrid contribution 0.939 -0.081 -0.703 1.175 sum -23.395 -5.102 14.822 28.161 Atomic orbital electron populations 1.22896 0.80594 1.03355 1.00153 1.88096 1.19641 1.25609 1.94925 1.20456 0.87340 0.86336 0.95311 0.90021 1.22265 1.03344 1.02285 0.94777 1.27267 1.00442 0.96661 1.00551 1.66063 1.00729 1.25243 1.24144 1.22447 0.96154 0.97063 0.92301 1.25935 1.01700 1.03656 1.08544 1.16795 0.81752 0.79400 0.84949 1.90864 1.83761 1.42028 1.24228 1.48088 1.05720 1.62592 1.15909 1.22193 0.99776 0.97634 0.83584 1.21874 0.96079 1.00238 0.98555 1.21839 0.96993 1.01449 0.96223 1.20491 0.88464 0.96141 0.89186 0.93043 1.42376 1.15560 1.39570 1.38249 1.19271 1.01125 1.08518 1.08533 0.91013 1.24756 0.96549 0.99455 0.99919 1.69663 1.06838 1.39950 1.41479 0.86184 0.77418 0.81246 0.81353 1.21662 1.21718 1.20583 1.22917 0.85959 1.00971 0.93224 1.84023 1.07639 1.25927 1.33648 0.93667 0.93765 0.89104 0.91058 0.91190 0.90532 0.79487 0.90891 0.89394 0.90777 0.91588 0.91906 0.91281 0.78015 0.93446 0.88868 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.42 10.32 -35.23 -0.36 -3.79 16 3 C 0.17 1.34 3.23 -27.88 -0.09 1.25 16 4 H 0.08 0.46 7.78 -51.93 -0.40 0.06 16 5 C -0.17 -1.07 9.51 37.16 0.35 -0.72 16 6 C 0.03 0.28 6.28 -13.29 -0.08 0.19 16 7 N -0.45 -5.42 10.49 -11.50 -0.12 -5.54 16 8 C 0.08 0.91 9.01 -18.85 -0.17 0.74 16 9 C -0.27 -3.65 5.85 -37.10 -0.22 -3.87 16 10 C 0.59 9.73 7.61 -12.85 -0.10 9.63 16 11 O -0.53 -10.90 16.51 5.20 0.09 -10.81 16 12 N -0.59 -9.13 2.97 -174.31 -0.52 -9.65 16 13 C 0.09 1.05 5.12 -3.71 -0.02 1.03 16 14 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 15 C -0.13 -1.95 5.36 -26.69 -0.14 -2.09 16 16 C 0.17 3.31 2.92 -67.80 -0.20 3.11 16 17 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 18 N -0.72 -17.64 5.13 -53.30 -0.27 -17.92 16 19 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.09 1.75 6.03 -3.71 -0.02 1.73 16 28 S 0.23 2.53 23.15 -107.50 -2.49 0.04 16 29 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 30 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.32 7.87 -51.93 -0.41 -0.08 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.19 1.82 6.38 -52.49 -0.33 1.48 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.88 4.40 -51.93 -0.23 0.66 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.39 9.96 7.80 -40.82 -0.32 9.64 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.09 2.05 7.00 -51.93 -0.36 1.68 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -34.04 380.41 -8.90 -42.94 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.66 Total: 5.27 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 0.00 Total: 3.24 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.19 Total: -60.26 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.28 Total: -14.60 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.49 Total: 0.04 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.04 -8.90 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999161103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.272 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds