Wall clock time and date at job start Sat Apr 11 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99756 * 2 1 4 4 H 1.09003 * 109.47204 * 330.00041 * 3 2 1 5 5 C 1.53001 * 109.47191 * 89.99910 * 3 2 1 6 6 C 1.50699 * 109.47135 * 209.99657 * 3 2 1 7 7 N 1.29424 * 124.80166 * 314.98108 * 6 3 2 8 8 C 1.30953 * 117.35999 * 179.72799 * 7 6 3 9 9 C 1.35656 * 114.18986 * 0.52387 * 8 7 6 10 10 C 1.46680 * 126.13109 * 179.79127 * 9 8 7 11 11 O 1.21686 * 120.00544 * 147.56839 * 10 9 8 12 12 N 1.34787 * 119.99810 * 327.57262 * 10 9 8 13 13 C 1.46921 * 120.62765 * 353.79290 * 12 10 9 14 14 C 1.53194 * 108.77616 * 233.63384 * 13 12 10 15 15 C 1.53041 * 109.31079 * 305.36519 * 14 13 12 16 16 C 1.53044 * 109.53809 * 61.36196 * 15 14 13 17 17 H 1.08996 * 109.49505 * 58.58901 * 16 15 14 18 18 N 1.46507 * 109.52276 * 178.66916 * 16 15 14 19 19 C 1.36935 * 119.99623 * 204.85621 * 18 16 15 20 20 H 1.07996 * 120.00125 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99887 * 180.02562 * 19 18 16 22 22 N 1.31616 * 119.99687 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00019 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46918 * 89.99951 * 23 21 19 25 25 H 1.48497 * 109.47037 * 209.99748 * 23 21 19 26 26 H 1.48493 * 109.47186 * 330.00002 * 23 21 19 27 27 C 1.46925 * 120.63137 * 173.81388 * 12 10 9 28 28 S 1.70951 * 124.80553 * 134.99963 * 6 3 2 29 29 H 1.08999 * 109.46991 * 300.00323 * 1 2 3 30 30 H 1.08998 * 109.47095 * 60.00157 * 1 2 3 31 31 H 1.08999 * 109.46695 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47150 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.47272 * 300.00230 * 5 3 2 34 34 H 1.09006 * 109.47271 * 59.99564 * 5 3 2 35 35 H 1.08001 * 122.90356 * 180.34657 * 8 7 6 36 36 H 1.08995 * 109.59006 * 113.84580 * 13 12 10 37 37 H 1.09000 * 109.70663 * 353.48419 * 13 12 10 38 38 H 1.08998 * 109.50368 * 185.41794 * 14 13 12 39 39 H 1.09000 * 109.52479 * 65.33056 * 14 13 12 40 40 H 1.09005 * 109.46095 * 301.34843 * 15 14 13 41 41 H 1.08997 * 109.46509 * 181.38419 * 15 14 13 42 42 H 0.96995 * 119.99923 * 24.85224 * 18 16 15 43 43 H 0.97006 * 119.99494 * 179.97438 * 22 21 19 44 44 H 1.09005 * 109.58425 * 6.58526 * 27 12 10 45 45 H 1.08994 * 109.58380 * 246.15588 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3387 1.2639 -0.7103 7 7 4.2432 0.3555 -0.5327 8 6 5.3452 0.4584 -1.2327 9 6 5.3826 1.5366 -2.0551 10 6 6.4865 1.9054 -2.9479 11 8 6.2543 2.4629 -4.0043 12 7 7.7580 1.6267 -2.5981 13 6 8.0660 1.0785 -1.2703 14 6 9.1276 1.9612 -0.6065 15 6 10.3391 2.0799 -1.5340 16 6 9.9150 2.7398 -2.8481 17 1 9.4929 3.7233 -2.6417 18 7 11.0813 2.8821 -3.7233 19 6 11.0982 3.8530 -4.6889 20 1 10.2520 4.5139 -4.8050 21 6 12.2030 3.9875 -5.5185 22 7 13.2344 3.1823 -5.3766 23 14 12.2258 5.3114 -6.8362 24 1 12.8061 6.5581 -6.2753 25 1 13.0505 4.8539 -7.9832 26 1 10.8391 5.5747 -7.2974 27 6 8.8623 1.8659 -3.5373 28 16 3.8643 2.4103 -1.8645 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.6614 2.7670 1.4425 33 1 1.2568 1.8014 1.9564 34 1 2.8829 1.0775 1.9564 35 1 6.1554 -0.2520 -1.1593 36 1 8.4479 0.0629 -1.3739 37 1 7.1641 1.0691 -0.6583 38 1 9.4353 1.5125 0.3380 39 1 8.7133 2.9521 -0.4207 40 1 10.7384 1.0865 -1.7389 41 1 11.1062 2.6874 -1.0537 42 1 11.8414 2.2888 -3.6187 43 1 14.0063 3.2762 -5.9566 44 1 8.4848 2.3781 -4.4223 45 1 9.3091 0.9145 -3.8257 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999161103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:03 Heat of formation + Delta-G solvation = -35.087423 kcal Electronic energy + Delta-G solvation = -27001.671616 eV Core-core repulsion = 23145.993197 eV Total energy + Delta-G solvation = -3855.678419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.74017 -40.60779 -39.01157 -38.69759 -36.29407 -34.19701 -33.41965 -32.80001 -31.28937 -29.63544 -27.85971 -27.25658 -26.16355 -25.92315 -23.96827 -23.26861 -22.61568 -21.23945 -20.37650 -19.26426 -19.04836 -18.28607 -17.36449 -16.99735 -16.91754 -16.67508 -16.26733 -16.17538 -15.93592 -15.47069 -15.33333 -15.23952 -15.09355 -14.74462 -14.16825 -14.08916 -14.01373 -13.70876 -13.57629 -13.25562 -13.09862 -12.90944 -12.75496 -12.61714 -12.52043 -12.23584 -12.04057 -11.98531 -11.91813 -11.76793 -11.45703 -11.37360 -11.10658 -10.89284 -10.68935 -10.51551 -10.05166 -9.82442 -9.04475 -7.99865 -5.29068 -0.90391 -0.07836 0.45889 1.30970 1.43719 1.44942 1.53924 1.84903 1.94445 2.52388 2.77296 2.96230 3.32578 3.39813 3.69108 3.70466 3.95442 3.99451 4.04672 4.05376 4.07210 4.15609 4.29489 4.35293 4.49979 4.55244 4.58429 4.67881 4.69875 4.80262 4.83558 4.85560 4.89979 4.92422 5.00206 5.10887 5.25752 5.34469 5.39940 5.42434 5.51856 6.10729 6.22523 6.24383 6.50997 6.91063 7.29722 8.01227 8.27038 9.22519 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.002368 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.741647 B =11820.661928 C =12471.587028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.393 6.393 3 C 0.160 3.840 4 H 0.107 0.893 5 C -0.163 4.163 6 C 0.042 3.958 7 N -0.470 5.470 8 C 0.099 3.901 9 C -0.308 4.308 10 C 0.585 3.415 11 O -0.584 6.584 12 N -0.588 5.588 13 C 0.087 3.913 14 C -0.120 4.120 15 C -0.118 4.118 16 C 0.167 3.833 17 H 0.031 0.969 18 N -0.728 5.728 19 C -0.245 4.245 20 H 0.065 0.935 21 C -0.068 4.068 22 N -0.962 5.962 23 Si 0.968 3.032 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.109 3.891 28 S 0.244 5.756 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.208 0.792 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.379 0.621 43 H 0.253 0.747 44 H 0.052 0.948 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.727 -6.441 18.642 32.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.312 6.312 3 C 0.098 3.902 4 H 0.125 0.875 5 C -0.222 4.222 6 C -0.233 4.233 7 N -0.184 5.184 8 C -0.059 4.059 9 C -0.433 4.433 10 C 0.373 3.627 11 O -0.466 6.466 12 N -0.320 5.320 13 C -0.034 4.034 14 C -0.158 4.158 15 C -0.156 4.156 16 C 0.057 3.943 17 H 0.049 0.951 18 N -0.368 5.368 19 C -0.377 4.377 20 H 0.083 0.917 21 C -0.261 4.261 22 N -0.612 5.612 23 Si 0.797 3.203 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.017 4.017 28 S 0.503 5.497 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.224 0.776 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.211 0.789 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.360 -5.648 17.926 32.374 hybrid contribution 1.385 0.073 -1.334 1.924 sum -24.975 -5.575 16.593 30.499 Atomic orbital electron populations 1.23099 0.78747 1.04217 1.01518 1.88047 1.21735 1.26322 1.95138 1.20773 0.86421 0.86696 0.96279 0.87508 1.22254 1.04268 1.02185 0.93536 1.27898 1.00948 0.95360 0.99059 1.66184 1.01208 1.26050 1.24943 1.22733 0.96376 0.96184 0.90627 1.25560 1.01985 1.05732 1.10027 1.17184 0.82557 0.78324 0.84662 1.90829 1.84604 1.44590 1.26559 1.48070 1.04720 1.62337 1.16836 1.22538 1.00823 0.98521 0.81492 1.21865 0.94258 1.00545 0.99171 1.21746 0.98561 1.01111 0.94203 1.20648 0.87121 0.95854 0.90643 0.95123 1.42492 1.16919 1.38900 1.38476 1.19498 1.00594 1.08688 1.08935 0.91737 1.25484 0.96533 1.01816 1.02225 1.69788 1.07301 1.41603 1.42506 0.85231 0.77288 0.78959 0.78846 1.21030 1.21715 1.20294 1.22352 0.86626 1.00207 0.92483 1.83966 1.06468 1.25780 1.33511 0.91841 0.92823 0.88623 0.90119 0.89105 0.92112 0.77552 0.88361 0.87222 0.86850 0.92176 0.90994 0.91862 0.78867 0.93814 0.92966 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.39 -6.47 10.32 -148.98 -1.54 -8.00 16 3 C 0.16 2.13 3.23 29.85 0.10 2.23 16 4 H 0.11 0.86 7.78 -2.39 -0.02 0.85 16 5 C -0.16 -1.62 9.51 71.98 0.68 -0.94 16 6 C 0.04 0.80 6.28 88.46 0.56 1.36 16 7 N -0.47 -10.31 10.49 -190.30 -2.00 -12.30 16 8 C 0.10 2.11 9.01 84.23 0.76 2.87 16 9 C -0.31 -7.94 5.85 23.88 0.14 -7.80 16 10 C 0.59 19.65 7.61 86.45 0.66 20.31 16 11 O -0.58 -25.11 16.51 -4.30 -0.07 -25.18 16 12 N -0.59 -18.01 2.97 -823.62 -2.45 -20.45 16 13 C 0.09 1.78 5.12 86.36 0.44 2.22 16 14 C -0.12 -2.52 6.08 30.67 0.19 -2.33 16 15 C -0.12 -3.49 5.36 30.62 0.16 -3.32 16 16 C 0.17 6.71 2.92 45.07 0.13 6.84 16 17 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 18 N -0.73 -36.90 5.13 -322.56 -1.65 -38.55 16 19 C -0.25 -14.05 9.93 84.03 0.83 -13.21 16 20 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 21 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 22 N -0.96 -58.76 13.06 21.65 0.28 -58.48 16 23 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 24 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 27 C 0.11 4.20 6.03 86.36 0.52 4.72 16 28 S 0.24 5.09 23.15 -56.49 -1.31 3.78 16 29 H 0.06 0.29 7.87 -2.39 -0.02 0.27 16 30 H 0.05 0.34 8.08 -2.39 -0.02 0.32 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.53 7.87 -2.39 -0.02 0.51 16 34 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.21 3.36 6.38 -2.91 -0.02 3.34 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.11 1.83 4.40 -2.39 -0.01 1.82 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.38 20.06 7.80 -92.71 -0.72 19.34 16 43 H 0.25 14.97 8.31 -92.70 -0.77 14.19 16 44 H 0.05 2.44 7.00 -2.38 -0.02 2.42 16 45 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -77.03 380.41 0.45 -76.58 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.29 Total: 22.22 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 6.86 Total: 10.85 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -5.81 Total: -129.79 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.61 Total: -33.18 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -1.31 Total: 3.78 kcal Total: -77.03 0.45 -76.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999161103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.488 kcal (2) G-P(sol) polarization free energy of solvation -77.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds