Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99622 * 2 1 4 4 H 1.08994 * 109.47622 * 30.00398 * 3 2 1 5 5 C 1.53004 * 109.47101 * 269.99915 * 3 2 1 6 6 C 1.50701 * 109.46731 * 150.00060 * 3 2 1 7 7 N 1.29437 * 124.80621 * 44.69963 * 6 3 2 8 8 C 1.30932 * 117.36682 * 179.76457 * 7 6 3 9 9 C 1.35666 * 114.18972 * 0.51707 * 8 7 6 10 10 C 1.46687 * 126.13299 * 179.69732 * 9 8 7 11 11 O 1.21686 * 120.00165 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99770 * 0.03549 * 10 9 8 13 13 C 1.46497 * 120.00062 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.49071 * 325.00143 * 13 12 10 15 15 C 1.53039 * 109.49862 * 204.93775 * 13 12 10 16 16 C 1.53038 * 109.53868 * 178.71138 * 15 13 12 17 17 C 1.53188 * 109.33778 * 61.31814 * 16 15 13 18 18 N 1.46926 * 108.77880 * 305.37889 * 17 16 15 19 19 C 1.36934 * 120.63165 * 233.59007 * 18 17 16 20 20 H 1.08004 * 119.99949 * 152.30752 * 19 18 17 21 21 C 1.38808 * 120.00295 * 332.30052 * 19 18 17 22 22 N 1.31617 * 119.99806 * 342.60582 * 21 19 18 23 23 Si 1.86799 * 120.00278 * 162.60084 * 21 19 18 24 24 H 1.48501 * 109.47067 * 94.35108 * 23 21 19 25 25 H 1.48503 * 109.47271 * 214.35319 * 23 21 19 26 26 H 1.48507 * 109.47018 * 334.35114 * 23 21 19 27 27 C 1.46925 * 118.73607 * 53.60553 * 18 17 16 28 28 S 1.70953 * 124.80459 * 224.99665 * 6 3 2 29 29 H 1.09001 * 109.47315 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47467 * 300.00170 * 1 2 3 31 31 H 1.09002 * 109.47033 * 60.00127 * 1 2 3 32 32 H 1.09005 * 109.46817 * 300.00120 * 5 3 2 33 33 H 1.08999 * 109.47138 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.46986 * 60.00490 * 5 3 2 35 35 H 1.08001 * 122.90735 * 180.24639 * 8 7 6 36 36 H 0.96998 * 119.99840 * 0.02562 * 12 10 9 37 37 H 1.08995 * 109.45839 * 298.70039 * 15 13 12 38 38 H 1.09002 * 109.46091 * 58.65963 * 15 13 12 39 39 H 1.09004 * 109.47240 * 301.36448 * 16 15 13 40 40 H 1.09000 * 109.51944 * 181.29809 * 16 15 13 41 41 H 1.09001 * 109.59040 * 185.59338 * 17 16 15 42 42 H 1.09002 * 109.59046 * 65.16807 * 17 16 15 43 43 H 0.96999 * 120.00522 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.58918 * 186.60818 * 27 18 17 45 45 H 1.09003 * 109.70542 * 66.25738 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3385 1.2639 0.7104 7 7 4.2408 0.3521 0.5372 8 6 5.3472 0.4611 1.2289 9 6 5.3823 1.5361 2.0557 10 6 6.4857 1.9045 2.9492 11 8 6.3982 2.8977 3.6467 12 7 7.5967 1.1428 2.9974 13 6 8.6985 1.5103 3.8902 14 1 8.7769 2.5963 3.9432 15 6 10.0079 0.9293 3.3516 16 6 11.1644 1.3396 4.2660 17 6 10.9256 0.7752 5.6700 18 7 9.6029 1.2125 6.1369 19 6 9.4642 1.8540 7.3387 20 1 8.6494 2.5466 7.4903 21 6 10.3707 1.6142 8.3622 22 7 11.1422 0.5486 8.3217 23 14 10.4956 2.8038 9.7970 24 1 9.6338 2.3297 10.9096 25 1 11.9052 2.8760 10.2589 26 1 10.0473 4.1514 9.3632 27 6 8.4319 0.9480 5.2900 28 16 3.8642 2.4103 1.8645 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.8829 1.0775 -1.9563 33 1 2.6613 2.7670 -1.4425 34 1 1.2568 1.8015 -1.9563 35 1 6.1597 -0.2462 1.1514 36 1 7.6666 0.3514 2.4411 37 1 9.9374 -0.1580 3.3215 38 1 10.1872 1.3093 2.3458 39 1 11.2202 2.4270 4.3156 40 1 12.0998 0.9449 3.8695 41 1 11.6937 1.1464 6.3486 42 1 10.9598 -0.3137 5.6369 43 1 11.7759 0.3811 9.0367 44 1 7.5545 1.4332 5.7176 45 1 8.2601 -0.1265 5.2255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007343018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = -13.117013 kcal Electronic energy + Delta-G solvation = -26708.665842 eV Core-core repulsion = 22853.940131 eV Total energy + Delta-G solvation = -3854.725711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.41236 -39.45560 -38.33239 -37.30699 -34.39784 -33.00108 -32.38969 -30.51820 -30.31198 -28.30183 -27.23187 -26.20723 -25.29111 -23.38474 -22.58495 -22.10971 -21.17392 -19.81435 -19.30233 -18.50066 -17.52367 -16.78560 -16.53889 -15.96615 -15.77855 -15.46103 -15.14609 -14.78453 -14.53042 -14.35719 -13.93095 -13.83771 -13.59435 -13.42244 -13.11157 -13.10388 -12.75505 -12.42552 -12.41058 -12.16261 -11.88893 -11.75604 -11.47803 -11.12321 -10.93376 -10.77728 -10.52528 -10.27739 -10.25419 -10.18501 -9.91363 -9.82029 -9.68422 -9.65325 -9.56550 -9.23835 -8.88794 -8.40831 -6.67710 -5.78148 -3.20060 -0.01228 0.83237 1.38865 2.26666 3.17700 3.28932 3.38418 3.40046 3.46860 3.51461 3.66509 4.27849 4.51882 4.57484 4.64583 4.76765 4.86384 4.93999 4.99270 5.15067 5.25314 5.27461 5.28576 5.36972 5.52025 5.59885 5.66615 5.68966 5.76525 6.04692 6.10924 6.21709 6.49080 6.58366 6.61502 6.62564 6.66578 6.81339 6.95143 7.35066 7.38016 7.58179 7.64326 7.83707 8.24779 8.46194 9.22364 9.84586 10.40056 11.30666 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.002244 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.770164 B =12472.279857 C =13038.949642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.167 3.833 4 H 0.083 0.917 5 C -0.168 4.168 6 C 0.026 3.974 7 N -0.450 5.450 8 C 0.086 3.914 9 C -0.280 4.280 10 C 0.589 3.411 11 O -0.528 6.528 12 N -0.707 5.707 13 C 0.127 3.873 14 H 0.089 0.911 15 C -0.115 4.115 16 C -0.139 4.139 17 C 0.166 3.834 18 N -0.587 5.587 19 C -0.250 4.250 20 H 0.067 0.933 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.142 3.858 28 S 0.239 5.761 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.183 0.817 36 H 0.396 0.604 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.020 0.980 43 H 0.253 0.747 44 H 0.058 0.942 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 0.448 -20.880 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.105 3.895 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.250 4.250 7 N -0.164 5.164 8 C -0.073 4.073 9 C -0.405 4.405 10 C 0.372 3.628 11 O -0.406 6.406 12 N -0.358 5.358 13 C 0.022 3.978 14 H 0.107 0.893 15 C -0.153 4.153 16 C -0.179 4.179 17 C 0.041 3.959 18 N -0.310 5.310 19 C -0.380 4.380 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.203 1.203 27 C 0.014 3.986 28 S 0.498 5.502 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.200 0.800 36 H 0.230 0.770 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -17.355 1.469 -20.142 26.628 hybrid contribution 0.708 -0.450 0.415 0.936 sum -16.646 1.019 -19.727 25.832 Atomic orbital electron populations 1.22900 0.80569 1.03387 1.00155 1.88098 1.19668 1.25558 1.94921 1.20466 0.87366 0.86393 0.95279 0.89966 1.22265 1.03344 1.02244 0.94821 1.27314 1.00455 0.96385 1.00795 1.66020 1.00756 1.25349 1.24262 1.22234 0.96119 0.96407 0.92519 1.26000 1.02170 1.03468 1.08866 1.16679 0.81240 0.83486 0.81351 1.90887 1.80241 1.26365 1.43093 1.45919 1.16992 1.28652 1.44195 1.21850 0.83938 1.01236 0.90783 0.89285 1.21687 0.94768 1.00423 0.98450 1.22180 0.95719 1.01291 0.98715 1.20858 0.88787 0.95775 0.90501 1.44001 1.00539 1.67890 1.18550 1.19214 1.12764 1.17143 0.88846 0.91558 1.25022 1.00607 0.96737 0.97290 1.70039 1.26285 1.24888 1.33608 0.86278 0.77008 0.81130 0.82386 1.21447 1.21534 1.20331 1.21181 0.91840 0.96629 0.88965 1.84047 1.07534 1.25524 1.33103 0.89080 0.93723 0.93690 0.90578 0.91088 0.91161 0.80036 0.77044 0.92099 0.92949 0.92365 0.92597 0.89194 0.96238 0.93663 0.92351 0.96366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.36 -3.49 10.31 -35.23 -0.36 -3.85 16 3 C 0.17 1.36 3.23 -27.88 -0.09 1.27 16 4 H 0.08 0.47 7.78 -51.93 -0.40 0.07 16 5 C -0.17 -1.09 9.51 37.16 0.35 -0.73 16 6 C 0.03 0.27 6.28 -13.29 -0.08 0.19 16 7 N -0.45 -5.47 10.48 -11.50 -0.12 -5.59 16 8 C 0.09 0.97 10.93 -18.86 -0.21 0.77 16 9 C -0.28 -3.63 6.48 -37.09 -0.24 -3.87 16 10 C 0.59 9.35 7.75 -12.85 -0.10 9.25 16 11 O -0.53 -10.54 16.63 5.20 0.09 -10.45 16 12 N -0.71 -10.21 5.06 -55.00 -0.28 -10.48 16 13 C 0.13 2.26 2.60 -67.81 -0.18 2.08 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 15 C -0.12 -1.82 5.36 -26.69 -0.14 -1.96 16 16 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 17 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 18 N -0.59 -14.94 2.99 -172.32 -0.52 -15.46 16 19 C -0.25 -7.06 9.58 -15.06 -0.14 -7.20 16 20 H 0.07 1.89 7.89 -52.48 -0.41 1.47 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -26.32 11.19 55.49 0.62 -25.70 16 23 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 C 0.14 3.09 6.09 -3.71 -0.02 3.07 16 28 S 0.24 2.64 23.01 -107.50 -2.47 0.17 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.21 8.08 -51.93 -0.42 -0.21 16 31 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 35 H 0.18 1.55 7.15 -52.49 -0.38 1.17 16 36 H 0.40 4.34 7.31 -40.82 -0.30 4.04 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -34.22 382.63 -9.12 -43.35 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.79 Total: -0.06 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -0.03 Total: 5.23 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.29 Total: -57.23 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.28 Total: -14.30 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.47 Total: 0.17 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.22 -9.12 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007343018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.228 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds