Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42893 * 113.99784 * 2 1 4 4 H 1.09003 * 109.47432 * 329.99824 * 3 2 1 5 5 C 1.52998 * 109.47430 * 90.00087 * 3 2 1 6 6 C 1.50704 * 109.47052 * 209.99932 * 3 2 1 7 7 N 1.29431 * 124.80047 * 315.30365 * 6 3 2 8 8 C 1.30941 * 117.36235 * 180.16752 * 7 6 3 9 9 C 1.35666 * 114.19187 * 359.54633 * 8 7 6 10 10 C 1.46685 * 126.13219 * 180.25543 * 9 8 7 11 11 O 1.21688 * 119.99760 * 179.97438 * 10 9 8 12 12 N 1.34781 * 119.99825 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99640 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.49796 * 35.07189 * 13 12 10 15 15 C 1.53044 * 109.49292 * 155.16511 * 13 12 10 16 16 C 1.53040 * 109.53632 * 181.31954 * 15 13 12 17 17 C 1.53198 * 109.31152 * 298.63723 * 16 15 13 18 18 N 1.46919 * 108.77497 * 54.63224 * 17 16 15 19 19 C 1.36941 * 120.62695 * 126.41430 * 18 17 16 20 20 H 1.08003 * 120.00227 * 331.80428 * 19 18 17 21 21 C 1.38817 * 119.99942 * 151.80373 * 19 18 17 22 22 N 1.31615 * 120.00021 * 343.09308 * 21 19 18 23 23 Si 1.86805 * 119.99891 * 163.08528 * 21 19 18 24 24 H 1.48498 * 109.46975 * 60.00328 * 23 21 19 25 25 H 1.48496 * 109.46931 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47134 * 300.00444 * 23 21 19 27 27 C 1.46927 * 118.74407 * 306.39495 * 18 17 16 28 28 S 1.70950 * 124.80667 * 134.99908 * 6 3 2 29 29 H 1.09001 * 109.47147 * 60.00282 * 1 2 3 30 30 H 1.09007 * 109.47130 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47329 * 300.00380 * 1 2 3 32 32 H 1.09003 * 109.47027 * 59.99489 * 5 3 2 33 33 H 1.08992 * 109.47421 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.47102 * 299.99787 * 5 3 2 35 35 H 1.07997 * 122.90445 * 179.82350 * 8 7 6 36 36 H 0.96997 * 119.99858 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.45844 * 301.33789 * 15 13 12 38 38 H 1.09002 * 109.46097 * 61.29897 * 15 13 12 39 39 H 1.09003 * 109.49522 * 178.68651 * 16 15 13 40 40 H 1.08997 * 109.49530 * 58.58550 * 16 15 13 41 41 H 1.09004 * 109.58643 * 294.84581 * 17 16 15 42 42 H 1.08996 * 109.70023 * 174.49702 * 17 16 15 43 43 H 0.97003 * 120.00074 * 179.97438 * 22 21 19 44 44 H 1.09006 * 109.58067 * 293.81690 * 27 18 17 45 45 H 1.08998 * 109.58913 * 173.39874 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3387 1.2639 -0.7104 7 7 4.2408 0.3521 -0.5372 8 6 5.3467 0.4603 -1.2299 9 6 5.3819 1.5355 -2.0565 10 6 6.4853 1.9036 -2.9502 11 8 6.3979 2.8970 -3.6476 12 7 7.5959 1.1415 -2.9990 13 6 8.6976 1.5089 -3.8920 14 1 8.7773 2.5947 -3.9438 15 6 10.0065 0.9250 -3.3552 16 6 11.1631 1.3357 -4.2694 17 6 10.9229 0.7734 -5.6740 18 7 9.6004 1.2127 -6.1395 19 6 9.4617 1.8559 -7.3404 20 1 10.2782 2.4412 -7.7370 21 6 8.2718 1.7555 -8.0482 22 7 7.4114 0.8030 -7.7572 23 14 7.8915 2.9726 -9.4134 24 1 8.9404 2.8849 -10.4609 25 1 6.5692 2.6519 -10.0082 26 1 7.8625 4.3487 -8.8559 27 6 8.4295 0.9485 -5.2922 28 16 3.8643 2.4102 -1.8646 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.8829 1.0774 1.9563 33 1 2.6614 2.7669 1.4424 34 1 1.2568 1.8015 1.9563 35 1 6.1586 -0.2477 -1.1533 36 1 7.6654 0.3495 -2.4434 37 1 10.1871 1.3032 -2.3489 38 1 9.9345 -0.1623 -3.3268 39 1 12.0981 0.9391 -3.8737 40 1 11.2201 2.4231 -4.3177 41 1 10.9558 -0.3157 -5.6422 42 1 11.6908 1.1424 -6.3538 43 1 6.5796 0.7331 -8.2515 44 1 8.2591 -0.1263 -5.2293 45 1 7.5524 1.4352 -5.7188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007343021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = -12.609657 kcal Electronic energy + Delta-G solvation = -27064.388046 eV Core-core repulsion = 23209.684336 eV Total energy + Delta-G solvation = -3854.703710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.26616 -39.29230 -38.23291 -37.24185 -34.20321 -32.92649 -32.57981 -30.45897 -29.92963 -28.37515 -27.15444 -26.09927 -25.26931 -23.27318 -22.51933 -22.11215 -21.03755 -19.68397 -19.22370 -18.39106 -17.40547 -16.76959 -16.43751 -15.90822 -15.68584 -15.30503 -15.07722 -14.74028 -14.41248 -14.09260 -13.89310 -13.76060 -13.50014 -13.47401 -13.02785 -12.99073 -12.66126 -12.42423 -12.33180 -12.08428 -11.92590 -11.64488 -11.39141 -11.02381 -10.81218 -10.70044 -10.51369 -10.39670 -10.26071 -10.10171 -9.94413 -9.86062 -9.57244 -9.51427 -9.45264 -9.10233 -8.61379 -8.42415 -6.65366 -5.74985 -3.18824 0.12983 0.96759 1.52614 2.40564 3.33814 3.43574 3.45862 3.49568 3.51576 3.52807 3.77769 4.37164 4.54559 4.66175 4.77070 4.90427 4.93927 5.01923 5.13508 5.22819 5.32755 5.34878 5.35803 5.39171 5.53225 5.61496 5.67332 5.75786 5.87341 6.05632 6.12502 6.31417 6.40873 6.45432 6.67223 6.71396 6.74879 6.85349 6.95530 7.26779 7.50370 7.71272 7.76478 7.84891 8.44782 8.49851 9.23181 9.87176 10.42030 11.32963 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015051 B = 0.002796 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.874128 B =10013.600302 C =11162.475894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.167 3.833 4 H 0.082 0.918 5 C -0.167 4.167 6 C 0.022 3.978 7 N -0.449 5.449 8 C 0.083 3.917 9 C -0.274 4.274 10 C 0.588 3.412 11 O -0.525 6.525 12 N -0.705 5.705 13 C 0.118 3.882 14 H 0.085 0.915 15 C -0.116 4.116 16 C -0.131 4.131 17 C 0.142 3.858 18 N -0.588 5.588 19 C -0.258 4.258 20 H 0.066 0.934 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.903 3.097 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.166 3.834 28 S 0.239 5.761 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.182 0.818 36 H 0.393 0.607 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.056 0.944 43 H 0.254 0.746 44 H 0.018 0.982 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 -0.040 19.575 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.106 3.894 4 H 0.100 0.900 5 C -0.226 4.226 6 C -0.253 4.253 7 N -0.164 5.164 8 C -0.076 4.076 9 C -0.399 4.399 10 C 0.371 3.629 11 O -0.402 6.402 12 N -0.355 5.355 13 C 0.013 3.987 14 H 0.103 0.897 15 C -0.154 4.154 16 C -0.170 4.170 17 C 0.015 3.985 18 N -0.311 5.311 19 C -0.387 4.387 20 H 0.084 0.916 21 C -0.192 4.192 22 N -0.542 5.542 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.039 3.961 28 S 0.497 5.503 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.199 0.801 36 H 0.227 0.773 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.376 0.990 18.871 21.558 hybrid contribution 0.290 -0.409 -0.369 0.622 sum -10.087 0.581 18.502 21.081 Atomic orbital electron populations 1.22895 0.80650 1.03336 1.00119 1.88099 1.19599 1.25612 1.94915 1.20450 0.87421 0.86342 0.95218 0.90013 1.22259 1.03255 1.02221 0.94883 1.27275 1.00450 0.96609 1.00975 1.66009 1.00752 1.25288 1.24314 1.22206 0.96165 0.96463 0.92755 1.26039 1.02089 1.03303 1.08508 1.16650 0.81240 0.83649 0.81359 1.90897 1.80046 1.26462 1.42748 1.45851 1.17113 1.28439 1.44140 1.22081 0.83523 1.01081 0.92032 0.89716 1.21685 0.95013 1.00492 0.98252 1.22003 0.96112 1.01315 0.97617 1.20965 0.89158 0.95893 0.92439 1.43950 1.01040 1.67290 1.18770 1.19098 1.00529 1.23079 0.96028 0.91625 1.25053 0.98873 0.97347 0.97963 1.70001 1.10784 1.30677 1.42773 0.86365 0.77277 0.81497 0.81611 1.20884 1.21612 1.20851 1.21098 0.92561 0.96974 0.85438 1.84039 1.07720 1.25526 1.33003 0.93728 0.89121 0.93746 0.90611 0.91117 0.91239 0.80097 0.77309 0.92964 0.92109 0.92521 0.92068 0.96368 0.92562 0.93582 0.96348 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.89 10.31 -35.23 -0.36 -4.25 16 3 C 0.17 1.56 3.23 -27.88 -0.09 1.47 16 4 H 0.08 0.57 7.78 -51.93 -0.40 0.17 16 5 C -0.17 -1.24 9.51 37.16 0.35 -0.89 16 6 C 0.02 0.26 6.28 -13.29 -0.08 0.18 16 7 N -0.45 -6.09 10.49 -11.50 -0.12 -6.21 16 8 C 0.08 1.07 10.93 -18.85 -0.21 0.86 16 9 C -0.27 -4.09 6.48 -37.09 -0.24 -4.33 16 10 C 0.59 10.68 7.75 -12.85 -0.10 10.58 16 11 O -0.52 -11.84 16.63 5.20 0.09 -11.75 16 12 N -0.71 -11.60 5.07 -55.00 -0.28 -11.88 16 13 C 0.12 2.28 2.60 -67.81 -0.18 2.11 16 14 H 0.08 1.86 7.58 -51.93 -0.39 1.47 16 15 C -0.12 -1.84 5.35 -26.69 -0.14 -1.98 16 16 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 17 C 0.14 2.93 6.52 -3.71 -0.02 2.90 16 18 N -0.59 -14.95 2.99 -172.32 -0.52 -15.46 16 19 C -0.26 -7.26 9.58 -15.06 -0.14 -7.40 16 20 H 0.07 1.80 7.89 -52.48 -0.41 1.39 16 21 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 22 N -0.90 -26.98 11.20 55.49 0.62 -26.35 16 23 Si 0.90 22.62 29.59 -169.99 -5.03 17.59 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.17 4.06 4.88 -3.72 -0.02 4.04 16 28 S 0.24 3.05 23.01 -107.50 -2.47 0.58 16 29 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.38 7.87 -51.93 -0.41 -0.02 16 35 H 0.18 1.82 7.15 -52.49 -0.38 1.44 16 36 H 0.39 5.01 7.31 -40.82 -0.30 4.71 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 2.73 6.06 -51.93 -0.31 2.42 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -35.13 382.65 -9.12 -44.25 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.79 Total: 1.14 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.03 Total: 6.58 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.29 Total: -59.90 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.28 Total: -16.00 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.47 Total: 0.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.13 -9.12 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007343021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.642 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds