Wall clock time and date at job start Sat Apr 11 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42893 * 113.99784 * 2 1 4 4 H 1.09003 * 109.47432 * 329.99824 * 3 2 1 5 5 C 1.52998 * 109.47430 * 90.00087 * 3 2 1 6 6 C 1.50704 * 109.47052 * 209.99932 * 3 2 1 7 7 N 1.29431 * 124.80047 * 315.30365 * 6 3 2 8 8 C 1.30941 * 117.36235 * 180.16752 * 7 6 3 9 9 C 1.35666 * 114.19187 * 359.54633 * 8 7 6 10 10 C 1.46685 * 126.13219 * 180.25543 * 9 8 7 11 11 O 1.21688 * 119.99760 * 179.97438 * 10 9 8 12 12 N 1.34781 * 119.99825 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99640 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.49796 * 35.07189 * 13 12 10 15 15 C 1.53044 * 109.49292 * 155.16511 * 13 12 10 16 16 C 1.53040 * 109.53632 * 181.31954 * 15 13 12 17 17 C 1.53198 * 109.31152 * 298.63723 * 16 15 13 18 18 N 1.46919 * 108.77497 * 54.63224 * 17 16 15 19 19 C 1.36941 * 120.62695 * 126.41430 * 18 17 16 20 20 H 1.08003 * 120.00227 * 331.80428 * 19 18 17 21 21 C 1.38817 * 119.99942 * 151.80373 * 19 18 17 22 22 N 1.31615 * 120.00021 * 343.09308 * 21 19 18 23 23 Si 1.86805 * 119.99891 * 163.08528 * 21 19 18 24 24 H 1.48498 * 109.46975 * 60.00328 * 23 21 19 25 25 H 1.48496 * 109.46931 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47134 * 300.00444 * 23 21 19 27 27 C 1.46927 * 118.74407 * 306.39495 * 18 17 16 28 28 S 1.70950 * 124.80667 * 134.99908 * 6 3 2 29 29 H 1.09001 * 109.47147 * 60.00282 * 1 2 3 30 30 H 1.09007 * 109.47130 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47329 * 300.00380 * 1 2 3 32 32 H 1.09003 * 109.47027 * 59.99489 * 5 3 2 33 33 H 1.08992 * 109.47421 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.47102 * 299.99787 * 5 3 2 35 35 H 1.07997 * 122.90445 * 179.82350 * 8 7 6 36 36 H 0.96997 * 119.99858 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.45844 * 301.33789 * 15 13 12 38 38 H 1.09002 * 109.46097 * 61.29897 * 15 13 12 39 39 H 1.09003 * 109.49522 * 178.68651 * 16 15 13 40 40 H 1.08997 * 109.49530 * 58.58550 * 16 15 13 41 41 H 1.09004 * 109.58643 * 294.84581 * 17 16 15 42 42 H 1.08996 * 109.70023 * 174.49702 * 17 16 15 43 43 H 0.97003 * 120.00074 * 179.97438 * 22 21 19 44 44 H 1.09006 * 109.58067 * 293.81690 * 27 18 17 45 45 H 1.08998 * 109.58913 * 173.39874 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3387 1.2639 -0.7104 7 7 4.2408 0.3521 -0.5372 8 6 5.3467 0.4603 -1.2299 9 6 5.3819 1.5355 -2.0565 10 6 6.4853 1.9036 -2.9502 11 8 6.3979 2.8970 -3.6476 12 7 7.5959 1.1415 -2.9990 13 6 8.6976 1.5089 -3.8920 14 1 8.7773 2.5947 -3.9438 15 6 10.0065 0.9250 -3.3552 16 6 11.1631 1.3357 -4.2694 17 6 10.9229 0.7734 -5.6740 18 7 9.6004 1.2127 -6.1395 19 6 9.4617 1.8559 -7.3404 20 1 10.2782 2.4412 -7.7370 21 6 8.2718 1.7555 -8.0482 22 7 7.4114 0.8030 -7.7572 23 14 7.8915 2.9726 -9.4134 24 1 8.9404 2.8849 -10.4609 25 1 6.5692 2.6519 -10.0082 26 1 7.8625 4.3487 -8.8559 27 6 8.4295 0.9485 -5.2922 28 16 3.8643 2.4102 -1.8646 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.8829 1.0774 1.9563 33 1 2.6614 2.7669 1.4424 34 1 1.2568 1.8015 1.9563 35 1 6.1586 -0.2477 -1.1533 36 1 7.6654 0.3495 -2.4434 37 1 10.1871 1.3032 -2.3489 38 1 9.9345 -0.1623 -3.3268 39 1 12.0981 0.9391 -3.8737 40 1 11.2201 2.4231 -4.3177 41 1 10.9558 -0.3157 -5.6422 42 1 11.6908 1.1424 -6.3538 43 1 6.5796 0.7331 -8.2515 44 1 8.2591 -0.1263 -5.2293 45 1 7.5524 1.4352 -5.7188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007343021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:40 Heat of formation + Delta-G solvation = -38.416667 kcal Electronic energy + Delta-G solvation = -27065.507122 eV Core-core repulsion = 23209.684336 eV Total energy + Delta-G solvation = -3855.822786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42632 -40.56985 -39.10214 -38.80089 -35.89511 -34.53282 -33.57888 -32.00950 -31.45619 -29.75975 -27.76940 -27.25652 -26.98084 -24.37356 -23.92825 -23.69851 -22.34559 -21.23786 -20.47420 -19.43570 -18.77261 -18.49728 -17.31126 -17.17137 -16.72092 -16.58147 -16.37540 -16.09998 -15.83269 -15.41466 -15.34965 -15.10585 -15.06642 -14.64810 -14.17725 -14.14996 -14.03522 -13.61949 -13.49348 -13.26639 -12.94188 -12.74342 -12.66204 -12.62513 -12.53875 -12.30839 -12.09396 -12.00195 -11.78166 -11.65607 -11.39603 -11.28529 -10.89960 -10.67575 -10.57066 -10.54655 -10.25263 -10.03205 -8.70311 -7.90691 -5.36862 -0.93128 -0.05264 0.50879 1.31325 1.39847 1.45764 1.50342 2.02473 2.16453 2.48278 2.76078 2.95101 3.25556 3.59679 3.68024 3.79220 3.93866 4.02117 4.03784 4.09381 4.12958 4.26077 4.46741 4.48268 4.56854 4.59503 4.67726 4.79036 4.81561 4.88538 4.90655 4.91866 5.09084 5.18913 5.20027 5.22773 5.30211 5.37401 5.51686 5.60387 5.74195 6.09271 6.33328 6.43577 6.51434 7.08139 7.13688 7.83524 8.32573 9.13854 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015051 B = 0.002796 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.874128 B =10013.600302 C =11162.475894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.394 6.394 3 C 0.159 3.841 4 H 0.107 0.893 5 C -0.162 4.162 6 C 0.041 3.959 7 N -0.473 5.473 8 C 0.106 3.894 9 C -0.313 4.313 10 C 0.588 3.412 11 O -0.580 6.580 12 N -0.692 5.692 13 C 0.133 3.867 14 H 0.055 0.945 15 C -0.107 4.107 16 C -0.121 4.121 17 C 0.134 3.866 18 N -0.610 5.610 19 C -0.265 4.265 20 H 0.069 0.931 21 C -0.051 4.051 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.267 1.267 25 H -0.294 1.294 26 H -0.284 1.284 27 C 0.178 3.822 28 S 0.241 5.759 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.209 0.791 36 H 0.414 0.586 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.022 0.978 42 H 0.055 0.945 43 H 0.247 0.753 44 H 0.001 0.999 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 -0.350 22.010 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.313 6.313 3 C 0.098 3.902 4 H 0.125 0.875 5 C -0.221 4.221 6 C -0.234 4.234 7 N -0.187 5.187 8 C -0.053 4.053 9 C -0.438 4.438 10 C 0.374 3.626 11 O -0.461 6.461 12 N -0.344 5.344 13 C 0.027 3.973 14 H 0.074 0.926 15 C -0.145 4.145 16 C -0.160 4.160 17 C 0.010 3.990 18 N -0.333 5.333 19 C -0.395 4.395 20 H 0.086 0.914 21 C -0.247 4.247 22 N -0.576 5.576 23 Si 0.790 3.210 24 H -0.192 1.192 25 H -0.220 1.220 26 H -0.211 1.211 27 C 0.051 3.949 28 S 0.501 5.499 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.226 0.774 36 H 0.252 0.748 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.019 0.981 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.159 0.652 21.346 23.650 hybrid contribution 0.164 -0.373 -1.054 1.130 sum -9.995 0.279 20.293 22.622 Atomic orbital electron populations 1.23104 0.78728 1.04238 1.01524 1.88048 1.21772 1.26300 1.95141 1.20787 0.86366 0.86722 0.96332 0.87538 1.22245 1.04316 1.02126 0.93419 1.27960 1.01030 0.95160 0.99213 1.66145 1.01293 1.26092 1.25201 1.22625 0.96437 0.95524 0.90731 1.25695 1.02412 1.05479 1.10184 1.17061 0.81902 0.82816 0.80856 1.90861 1.81163 1.28925 1.45193 1.45626 1.16179 1.29008 1.43542 1.21610 0.86349 0.99227 0.90159 0.92646 1.21665 0.91957 1.01357 0.99539 1.21903 0.98331 1.00733 0.95081 1.21199 0.86642 0.96226 0.94972 1.44242 1.02976 1.67646 1.18484 1.19464 1.00507 1.22720 0.96835 0.91360 1.25818 0.99117 0.99080 1.00664 1.70163 1.10904 1.32465 1.44081 0.85416 0.77088 0.79055 0.79427 1.19180 1.22041 1.21085 1.20787 0.90789 0.95318 0.88005 1.84000 1.06990 1.25753 1.33205 0.92938 0.88596 0.91686 0.92178 0.90143 0.88910 0.77422 0.74842 0.89314 0.90455 0.88260 0.92941 0.95990 0.92597 0.94441 0.98096 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.39 -7.67 10.31 -148.98 -1.54 -9.21 16 3 C 0.16 2.63 3.23 29.85 0.10 2.73 16 4 H 0.11 1.21 7.78 -2.39 -0.02 1.19 16 5 C -0.16 -2.01 9.51 71.98 0.68 -1.32 16 6 C 0.04 0.94 6.28 88.46 0.56 1.49 16 7 N -0.47 -12.14 10.49 -190.30 -2.00 -14.14 16 8 C 0.11 2.61 10.93 84.23 0.92 3.53 16 9 C -0.31 -9.33 6.48 23.88 0.15 -9.18 16 10 C 0.59 21.95 7.75 86.45 0.67 22.62 16 11 O -0.58 -27.66 16.63 -4.31 -0.07 -27.73 16 12 N -0.69 -22.64 5.07 -446.13 -2.26 -24.90 16 13 C 0.13 5.16 2.60 45.07 0.12 5.27 16 14 H 0.06 2.50 7.58 -2.39 -0.02 2.49 16 15 C -0.11 -3.08 5.35 30.62 0.16 -2.92 16 16 C -0.12 -3.71 6.08 30.67 0.19 -3.52 16 17 C 0.13 5.42 6.52 86.37 0.56 5.99 16 18 N -0.61 -31.66 2.99 -699.10 -2.09 -33.75 16 19 C -0.26 -15.31 9.58 84.03 0.81 -14.50 16 20 H 0.07 3.81 7.89 -2.91 -0.02 3.78 16 21 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16 22 N -0.93 -58.44 11.20 21.65 0.24 -58.19 16 23 Si 0.96 47.97 29.59 68.60 2.03 50.00 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 26 H -0.28 -14.12 7.11 99.48 0.71 -13.42 16 27 C 0.18 9.02 4.88 86.36 0.42 9.44 16 28 S 0.24 6.13 23.01 -56.49 -1.30 4.83 16 29 H 0.05 0.49 8.09 -2.39 -0.02 0.47 16 30 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 0.45 7.87 -2.39 -0.02 0.43 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.73 7.87 -2.39 -0.02 0.71 16 35 H 0.21 3.68 7.15 -2.91 -0.02 3.66 16 36 H 0.41 9.85 7.31 -92.71 -0.68 9.17 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.00 0.05 8.14 -2.38 -0.02 0.04 16 45 H 0.04 2.61 6.06 -2.39 -0.01 2.60 16 Total: -1.00 -81.56 382.65 0.33 -81.23 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.33 Total: 13.41 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 6.98 Total: 18.46 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -6.10 Total: -130.99 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.61 Total: -36.94 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -1.30 Total: 4.83 kcal Total: -81.56 0.33 -81.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007343021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.817 kcal (2) G-P(sol) polarization free energy of solvation -81.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds