Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00388 * 2 1 4 4 H 1.09000 * 109.46818 * 330.00112 * 3 2 1 5 5 C 1.52997 * 109.47368 * 89.99980 * 3 2 1 6 6 C 1.50699 * 109.47468 * 210.00215 * 3 2 1 7 7 N 1.29426 * 124.80224 * 315.02443 * 6 3 2 8 8 C 1.30950 * 117.36365 * 179.68599 * 7 6 3 9 9 C 1.35665 * 114.18831 * 0.52107 * 8 7 6 10 10 C 1.46682 * 126.12643 * 179.78654 * 9 8 7 11 11 O 1.21688 * 119.99586 * 179.69158 * 10 9 8 12 12 N 1.34779 * 120.00237 * 359.68880 * 10 9 8 13 13 C 1.46499 * 120.00002 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.49451 * 324.93379 * 13 12 10 15 15 C 1.53101 * 109.48633 * 204.86078 * 13 12 10 16 16 C 1.53040 * 109.50157 * 178.70019 * 15 13 12 17 17 C 1.53200 * 109.34161 * 61.34605 * 16 15 13 18 18 N 1.46925 * 108.76975 * 305.34886 * 17 16 15 19 19 C 1.36937 * 120.63308 * 233.62694 * 18 17 16 20 20 H 1.08006 * 119.99284 * 27.67496 * 19 18 17 21 21 C 1.38811 * 120.00340 * 207.68272 * 19 18 17 22 22 N 1.31609 * 119.99982 * 17.34632 * 21 19 18 23 23 Si 1.86796 * 119.99742 * 197.35003 * 21 19 18 24 24 H 1.48500 * 109.47411 * 90.00051 * 23 21 19 25 25 H 1.48500 * 109.47275 * 209.99861 * 23 21 19 26 26 H 1.48499 * 109.47434 * 329.99849 * 23 21 19 27 27 C 1.46928 * 118.74229 * 53.61228 * 18 17 16 28 28 S 1.70953 * 124.80767 * 134.99392 * 6 3 2 29 29 H 1.09005 * 109.46930 * 299.99839 * 1 2 3 30 30 H 1.08995 * 109.47193 * 59.99796 * 1 2 3 31 31 H 1.09004 * 109.47228 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47225 * 300.00368 * 5 3 2 33 33 H 1.09000 * 109.47043 * 60.00270 * 5 3 2 34 34 H 1.09003 * 109.47191 * 180.02562 * 5 3 2 35 35 H 1.08000 * 122.90536 * 180.34481 * 8 7 6 36 36 H 0.96997 * 119.99800 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.51164 * 58.67443 * 15 13 12 38 38 H 1.09004 * 109.45171 * 298.68905 * 15 13 12 39 39 H 1.08995 * 109.50011 * 301.37611 * 16 15 13 40 40 H 1.09003 * 109.50019 * 181.30908 * 16 15 13 41 41 H 1.08996 * 109.58549 * 65.12961 * 17 16 15 42 42 H 1.08992 * 109.58925 * 185.41917 * 17 16 15 43 43 H 0.97007 * 119.99646 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.58957 * 66.17266 * 27 18 17 45 45 H 1.09003 * 109.58686 * 186.60330 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4424 6 6 3.3386 1.2638 -0.7104 7 7 4.2429 0.3548 -0.5335 8 6 5.3444 0.4573 -1.2341 9 6 5.3820 1.5356 -2.0564 10 6 6.4856 1.9040 -2.9496 11 8 6.3983 2.8977 -3.6467 12 7 7.5963 1.1421 -2.9983 13 6 8.6988 1.5104 -3.8900 14 1 8.2969 1.9495 -4.8031 15 6 9.5128 0.2614 -4.2385 16 6 10.6451 0.6403 -5.1957 17 6 11.5737 1.6475 -4.5099 18 7 10.7726 2.7871 -4.0428 19 6 11.1074 4.0669 -4.3963 20 1 11.6332 4.2515 -5.3215 21 6 10.7713 5.1270 -3.5656 22 7 10.4495 4.9022 -2.3094 23 14 10.7756 6.8725 -4.2307 24 1 9.4331 7.1980 -4.7756 25 1 11.1079 7.8188 -3.1355 26 1 11.7892 6.9887 -5.3097 27 6 9.6051 2.5274 -3.1893 28 16 3.8643 2.4101 -1.8647 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.2569 1.8014 1.9564 33 1 2.8830 1.0774 1.9563 34 1 2.6607 2.7673 1.4424 35 1 6.1543 -0.2535 -1.1613 36 1 7.6657 0.3499 -2.4429 37 1 8.8649 -0.4740 -4.7154 38 1 9.9344 -0.1630 -3.3273 39 1 10.2255 1.0874 -6.0968 40 1 11.2105 -0.2528 -5.4621 41 1 12.0639 1.1726 -3.6600 42 1 12.3257 1.9930 -5.2192 43 1 10.2150 5.6431 -1.7288 44 1 9.9348 2.1243 -2.2319 45 1 9.0567 3.4555 -3.0281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007343022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = -12.695156 kcal Electronic energy + Delta-G solvation = -27060.798107 eV Core-core repulsion = 23206.090689 eV Total energy + Delta-G solvation = -3854.707418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.26680 -39.29407 -38.24383 -37.24345 -34.20539 -32.92743 -32.58173 -30.45629 -29.93123 -28.37312 -27.16941 -26.09976 -25.27708 -23.27267 -22.51935 -22.11712 -21.03860 -19.68497 -19.22688 -18.39274 -17.40831 -16.77565 -16.44685 -15.89814 -15.70016 -15.31657 -15.09048 -14.72241 -14.39406 -14.06630 -14.01330 -13.72327 -13.53418 -13.37935 -13.08125 -12.96845 -12.65304 -12.41529 -12.33752 -12.08303 -11.92862 -11.64704 -11.39210 -11.02988 -10.81040 -10.73171 -10.51239 -10.39562 -10.24464 -10.11107 -9.94731 -9.85275 -9.56096 -9.53131 -9.45134 -9.10144 -8.61533 -8.43189 -6.66765 -5.75656 -3.18881 0.13224 0.96441 1.52625 2.40347 3.36530 3.40357 3.44114 3.50086 3.50838 3.53609 3.77912 4.36956 4.54081 4.67371 4.77264 4.90042 4.92988 4.99238 5.13443 5.25038 5.32065 5.33843 5.37639 5.38915 5.52843 5.61228 5.67063 5.78996 5.88500 6.05429 6.12379 6.31091 6.40661 6.45228 6.66925 6.69778 6.74587 6.85183 6.95099 7.26430 7.50243 7.70936 7.76418 7.84746 8.44542 8.49230 9.22568 9.86663 10.41242 11.32329 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.002762 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.658149 B =10135.143372 C =11306.060005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.168 3.832 4 H 0.082 0.918 5 C -0.168 4.168 6 C 0.022 3.978 7 N -0.450 5.450 8 C 0.083 3.917 9 C -0.274 4.274 10 C 0.587 3.413 11 O -0.525 6.525 12 N -0.705 5.705 13 C 0.118 3.882 14 H 0.085 0.915 15 C -0.116 4.116 16 C -0.131 4.131 17 C 0.142 3.858 18 N -0.588 5.588 19 C -0.257 4.257 20 H 0.067 0.933 21 C 0.006 3.994 22 N -0.899 5.899 23 Si 0.902 3.098 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.166 3.834 28 S 0.239 5.761 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.182 0.818 36 H 0.393 0.607 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.056 0.944 43 H 0.254 0.746 44 H 0.019 0.981 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.887 -11.159 4.791 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.106 3.894 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.253 4.253 7 N -0.164 5.164 8 C -0.076 4.076 9 C -0.399 4.399 10 C 0.371 3.629 11 O -0.401 6.401 12 N -0.355 5.355 13 C 0.013 3.987 14 H 0.103 0.897 15 C -0.155 4.155 16 C -0.171 4.171 17 C 0.016 3.984 18 N -0.311 5.311 19 C -0.386 4.386 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.542 5.542 23 Si 0.732 3.268 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.039 3.961 28 S 0.497 5.503 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.199 0.801 36 H 0.227 0.773 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.432 -9.939 4.334 21.385 hybrid contribution 0.575 -0.003 0.179 0.603 sum -17.856 -9.942 4.513 20.930 Atomic orbital electron populations 1.22887 0.80704 1.03265 1.00136 1.88088 1.19551 1.25721 1.94933 1.20450 0.87382 0.86219 0.95323 0.90024 1.22269 1.03273 1.02398 0.94790 1.27267 1.00392 0.96588 1.01039 1.66011 1.00841 1.25596 1.23935 1.22207 0.96157 0.96678 0.92540 1.26035 1.02161 1.02853 1.08891 1.16650 0.81120 0.83521 0.81614 1.90898 1.80699 1.25496 1.43051 1.45849 1.16582 1.28458 1.44656 1.22093 0.85995 0.96632 0.93988 0.89725 1.21696 0.97421 0.96495 0.99844 1.22005 0.97109 0.99266 0.98683 1.20961 0.92627 0.88730 0.96125 1.43962 1.26367 1.01788 1.58944 1.19157 1.35484 0.82379 1.01573 0.91529 1.25038 1.01281 0.98359 0.94636 1.70015 1.49804 1.30689 1.03740 0.86292 0.78034 0.84500 0.77955 1.21239 1.21780 1.20400 1.21110 0.87061 0.97366 0.90595 1.84040 1.07429 1.25455 1.33367 0.93707 0.93793 0.89169 0.91238 0.90550 0.90987 0.80095 0.77310 0.92948 0.92112 0.92071 0.92525 0.96352 0.92563 0.93649 0.96344 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.36 -3.76 10.32 -35.23 -0.36 -4.12 16 3 C 0.17 1.56 3.23 -27.88 -0.09 1.47 16 4 H 0.08 0.56 7.78 -51.93 -0.40 0.16 16 5 C -0.17 -1.34 9.51 37.16 0.35 -0.99 16 6 C 0.02 0.27 6.28 -13.29 -0.08 0.18 16 7 N -0.45 -6.09 10.49 -11.50 -0.12 -6.21 16 8 C 0.08 1.07 10.93 -18.85 -0.21 0.86 16 9 C -0.27 -4.09 6.48 -37.09 -0.24 -4.33 16 10 C 0.59 10.69 7.75 -12.85 -0.10 10.59 16 11 O -0.52 -11.85 16.63 5.20 0.09 -11.77 16 12 N -0.71 -11.60 5.06 -54.97 -0.28 -11.88 16 13 C 0.12 2.29 2.60 -67.78 -0.18 2.11 16 14 H 0.08 1.86 7.58 -51.93 -0.39 1.47 16 15 C -0.12 -1.84 5.36 -26.66 -0.14 -1.99 16 16 C -0.13 -2.18 6.08 -26.61 -0.16 -2.35 16 17 C 0.14 2.92 6.51 -3.71 -0.02 2.90 16 18 N -0.59 -14.90 2.99 -172.32 -0.52 -15.42 16 19 C -0.26 -7.20 9.59 -15.06 -0.14 -7.34 16 20 H 0.07 1.83 7.89 -52.48 -0.41 1.41 16 21 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 22 N -0.90 -26.88 11.19 55.49 0.62 -26.26 16 23 Si 0.90 22.58 29.59 -169.99 -5.03 17.55 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.17 4.03 4.89 -3.71 -0.02 4.02 16 28 S 0.24 3.06 23.01 -107.50 -2.47 0.58 16 29 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 30 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.41 7.87 -51.93 -0.41 0.01 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.18 1.82 7.15 -52.49 -0.38 1.44 16 36 H 0.39 5.01 7.31 -40.82 -0.30 4.71 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.10 2.75 6.04 -51.93 -0.31 2.44 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -35.01 382.63 -9.12 -44.13 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.79 Total: 1.16 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -0.03 Total: 6.48 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.29 Total: -59.77 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.28 Total: -15.89 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.47 Total: 0.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.01 -9.12 -44.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007343022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.433 kcal (2) G-P(sol) polarization free energy of solvation -35.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds