Wall clock time and date at job start Sat Apr 11 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00019 * 2 1 4 4 H 1.08999 * 109.46835 * 29.99984 * 3 2 1 5 5 C 1.53006 * 109.47166 * 270.00136 * 3 2 1 6 6 C 1.50701 * 109.47071 * 150.00247 * 3 2 1 7 7 N 1.28644 * 124.71925 * 224.99764 * 6 3 2 8 8 C 1.33559 * 115.76831 * 179.97438 * 7 6 3 9 9 C 1.47267 * 123.14004 * 179.97438 * 8 7 6 10 10 O 1.21635 * 119.99608 * 180.02562 * 9 8 7 11 11 N 1.34767 * 120.00244 * 0.02562 * 9 8 7 12 12 C 1.46507 * 120.00006 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.49799 * 324.99947 * 12 11 9 14 14 C 1.53038 * 109.49711 * 204.93578 * 12 11 9 15 15 C 1.53043 * 109.53696 * 178.68542 * 14 12 11 16 16 C 1.53195 * 109.31071 * 61.36439 * 15 14 12 17 17 N 1.46923 * 108.77544 * 305.36399 * 16 15 14 18 18 C 1.36939 * 120.63005 * 233.61364 * 17 16 15 19 19 H 1.08007 * 120.00303 * 27.67721 * 18 17 16 20 20 C 1.38813 * 119.99757 * 207.68020 * 18 17 16 21 21 N 1.31617 * 120.00171 * 17.36372 * 20 18 17 22 22 Si 1.86803 * 119.99826 * 197.35975 * 20 18 17 23 23 H 1.48498 * 109.47114 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47078 * 119.99909 * 22 20 18 25 25 H 1.48493 * 109.47358 * 240.00166 * 22 20 18 26 26 C 1.46931 * 118.76565 * 53.59266 * 17 16 15 27 27 C 1.35207 * 113.71651 * 0.02562 * 8 7 6 28 28 S 1.70766 * 124.72019 * 44.69848 * 6 3 2 29 29 H 1.08998 * 109.47046 * 59.99601 * 1 2 3 30 30 H 1.08998 * 109.46617 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47012 * 299.99545 * 1 2 3 32 32 H 1.09008 * 109.46998 * 60.00008 * 5 3 2 33 33 H 1.08994 * 109.47424 * 300.00045 * 5 3 2 34 34 H 1.08996 * 109.47033 * 179.97438 * 5 3 2 35 35 H 0.96998 * 120.00103 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.45662 * 298.70137 * 14 12 11 37 37 H 1.08993 * 109.46261 * 58.66163 * 14 12 11 38 38 H 1.09000 * 109.49804 * 181.31275 * 15 14 12 39 39 H 1.08994 * 109.49589 * 301.37942 * 15 14 12 40 40 H 1.08997 * 109.58683 * 65.15537 * 16 15 14 41 41 H 1.09008 * 109.58116 * 185.43678 * 16 15 14 42 42 H 0.96998 * 119.99713 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.61445 * 186.64248 * 26 17 16 44 44 H 1.08997 * 109.56409 * 66.21217 * 26 17 16 45 45 H 1.07998 * 125.58757 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7104 7 7 3.7326 2.1275 1.5786 8 6 4.9449 1.9171 2.0982 9 6 5.5549 2.8036 3.1036 10 8 6.6640 2.5577 3.5382 11 7 4.8843 3.8872 3.5420 12 6 5.4909 4.7688 4.5427 13 1 6.0859 4.1757 5.2371 14 6 4.3899 5.5029 5.3113 15 6 5.0215 6.3994 6.3788 16 6 5.9154 7.4423 5.7004 17 7 6.8864 6.7476 4.8442 18 6 8.2286 6.9852 4.9764 19 1 8.6304 7.2986 5.9287 20 6 9.0727 6.8234 3.8863 21 7 8.5745 6.7808 2.6688 22 14 10.9157 6.6661 4.1475 23 1 11.2183 6.7442 5.5992 24 1 11.3814 5.3605 3.6148 25 1 11.6122 7.7678 3.4361 26 6 6.3908 5.7927 3.8436 27 6 5.5602 0.8148 1.6140 28 16 4.5275 0.0598 0.4801 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2568 1.8015 -1.9564 33 1 2.8829 1.0776 -1.9564 34 1 2.6606 2.7673 -1.4425 35 1 3.9997 4.0831 3.1957 36 1 3.8104 6.1147 4.6198 37 1 3.7340 4.7756 5.7895 38 1 4.2360 6.9042 6.9412 39 1 5.6207 5.7913 7.0564 40 1 5.3031 8.1085 5.0927 41 1 6.4423 8.0209 6.4593 42 1 9.1645 6.6681 1.9071 43 1 7.2329 5.2810 3.3775 44 1 5.8178 6.3244 3.0840 45 1 6.5415 0.4661 1.8999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007344508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:48 Heat of formation + Delta-G solvation = -16.208768 kcal Electronic energy + Delta-G solvation = -27335.804325 eV Core-core repulsion = 23480.944546 eV Total energy + Delta-G solvation = -3854.859780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.46250 -39.03366 -38.26917 -37.09795 -34.08152 -32.80726 -32.60436 -30.03600 -29.82926 -28.91930 -27.27538 -25.77948 -25.22539 -23.88184 -22.16556 -21.76332 -20.90071 -19.78908 -19.33566 -18.52327 -16.75721 -16.71662 -16.47969 -16.32877 -15.79103 -15.25764 -15.11667 -14.71526 -14.25369 -13.99422 -13.89331 -13.62851 -13.30988 -13.25844 -13.09711 -12.93473 -12.64192 -12.33745 -12.28464 -12.10042 -12.04411 -11.76442 -11.45648 -10.98714 -10.73581 -10.69082 -10.44355 -10.29125 -10.19554 -10.01689 -9.97915 -9.89726 -9.73618 -9.56387 -9.46068 -9.01141 -8.46381 -8.39343 -6.61762 -5.71548 -3.14661 0.44402 1.12196 1.56160 1.98034 3.00844 3.44405 3.52664 3.54205 3.57353 3.70928 4.05944 4.53555 4.58074 4.68671 4.77487 4.91337 4.98795 5.18562 5.22538 5.25743 5.33240 5.37043 5.40476 5.44876 5.58387 5.66514 5.71599 5.75533 5.84622 6.12148 6.20062 6.37530 6.46084 6.53898 6.61144 6.74161 6.81140 6.97175 7.00314 7.27283 7.37549 7.77243 7.87239 8.01217 8.51603 8.63746 9.26779 9.91081 10.45967 11.36354 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.002897 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.812013 B = 9663.838304 C =10647.766400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.165 3.835 4 H 0.094 0.906 5 C -0.170 4.170 6 C 0.013 3.987 7 N -0.434 5.434 8 C 0.019 3.981 9 C 0.588 3.412 10 O -0.526 6.526 11 N -0.700 5.700 12 C 0.116 3.884 13 H 0.083 0.917 14 C -0.115 4.115 15 C -0.130 4.130 16 C 0.142 3.858 17 N -0.589 5.589 18 C -0.255 4.255 19 H 0.067 0.933 20 C 0.005 3.995 21 N -0.898 5.898 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.291 1.291 26 C 0.168 3.832 27 C -0.230 4.230 28 S 0.241 5.759 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.401 0.599 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.055 0.945 42 H 0.252 0.748 43 H 0.095 0.905 44 H 0.018 0.982 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.148 -13.891 -6.898 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.104 3.896 4 H 0.111 0.889 5 C -0.229 4.229 6 C -0.266 4.266 7 N -0.151 5.151 8 C -0.117 4.117 9 C 0.370 3.630 10 O -0.402 6.402 11 N -0.350 5.350 12 C 0.011 3.989 13 H 0.101 0.899 14 C -0.154 4.154 15 C -0.170 4.170 16 C 0.016 3.984 17 N -0.311 5.311 18 C -0.384 4.384 19 H 0.085 0.915 20 C -0.194 4.194 21 N -0.542 5.542 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.218 1.218 26 C 0.041 3.959 27 C -0.372 4.372 28 S 0.498 5.502 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.235 0.765 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.113 0.887 44 H 0.036 0.964 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -17.413 -14.643 -7.178 23.858 hybrid contribution 0.714 0.830 0.498 1.203 sum -16.699 -13.814 -6.680 22.678 Atomic orbital electron populations 1.22847 0.79876 1.03226 1.00464 1.87901 1.20569 1.26505 1.95124 1.20277 0.88364 0.85934 0.95028 0.88863 1.22306 1.03283 1.02725 0.94542 1.26672 1.01981 0.96982 1.00939 1.66824 1.13115 1.26823 1.08298 1.20565 0.91036 0.97729 1.02348 1.16986 0.84802 0.80564 0.80613 1.90861 1.18585 1.73191 1.57603 1.45886 1.20639 1.25280 1.43194 1.22041 0.94845 0.91901 0.90156 0.89901 1.21669 0.97206 0.98351 0.98143 1.22002 0.98969 0.98642 0.97415 1.20954 0.91369 0.92521 0.93565 1.43979 1.02263 1.44307 1.40598 1.19188 0.82278 1.42691 0.94279 0.91540 1.25040 0.98275 1.01089 0.94983 1.70032 1.33998 1.53007 0.97205 0.86239 0.85581 0.77388 0.77659 1.20201 1.21447 1.21794 1.21090 0.96436 0.88637 0.89784 1.26763 1.07129 1.00147 1.03191 1.82800 1.05697 1.26061 1.35691 0.93557 0.89146 0.93525 0.91052 0.91251 0.90469 0.76479 0.92186 0.93061 0.92606 0.92102 0.96405 0.92609 0.93750 0.88707 0.96431 0.79177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.33 10.16 -35.23 -0.36 -3.69 16 3 C 0.17 1.48 3.23 -27.88 -0.09 1.39 16 4 H 0.09 0.78 7.79 -51.93 -0.40 0.37 16 5 C -0.17 -1.25 9.51 37.16 0.35 -0.90 16 6 C 0.01 0.16 6.30 -13.61 -0.09 0.07 16 7 N -0.43 -6.25 10.12 -8.51 -0.09 -6.33 16 8 C 0.02 0.30 6.70 -84.53 -0.57 -0.26 16 9 C 0.59 11.61 7.76 -12.60 -0.10 11.51 16 10 O -0.53 -12.33 16.38 5.25 0.09 -12.25 16 11 N -0.70 -12.96 5.08 -54.81 -0.28 -13.24 16 12 C 0.12 2.39 2.60 -67.81 -0.18 2.22 16 13 H 0.08 1.91 7.58 -51.93 -0.39 1.52 16 14 C -0.12 -1.97 5.35 -26.69 -0.14 -2.12 16 15 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 16 C 0.14 3.03 6.51 -3.71 -0.02 3.00 16 17 N -0.59 -15.35 3.00 -172.31 -0.52 -15.87 16 18 C -0.25 -7.29 9.59 -15.06 -0.14 -7.44 16 19 H 0.07 1.86 7.89 -52.48 -0.41 1.44 16 20 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 21 N -0.90 -27.36 11.19 55.49 0.62 -26.74 16 22 Si 0.90 22.88 29.59 -169.99 -5.03 17.85 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C 0.17 4.24 4.88 -3.71 -0.02 4.22 16 27 C -0.23 -3.19 10.62 29.65 0.31 -2.88 16 28 S 0.24 2.55 22.73 -107.50 -2.44 0.10 16 29 H 0.05 0.19 7.87 -51.93 -0.41 -0.22 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.24 8.09 -51.93 -0.42 -0.18 16 32 H 0.07 0.39 7.87 -51.92 -0.41 -0.01 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.40 6.46 8.12 -40.82 -0.33 6.12 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 1.15 7.94 -51.92 -0.41 0.74 16 42 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.09 2.81 6.04 -51.93 -0.31 2.50 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.19 2.50 8.03 -52.49 -0.42 2.08 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -34.43 383.23 -8.93 -43.36 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.87 Total: 3.30 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 0.17 Total: 7.72 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.26 Total: -62.17 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.27 Total: -15.93 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.03 Total: 17.85 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.44 Total: 0.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.43 -8.93 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007344508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.147 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds