Wall clock time and date at job start Sat Apr 11 2020 05:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99982 * 2 1 4 4 H 1.08991 * 109.47653 * 30.00252 * 3 2 1 5 5 C 1.53007 * 109.47334 * 269.99865 * 3 2 1 6 6 C 1.50703 * 109.47368 * 150.00364 * 3 2 1 7 7 N 1.28649 * 124.72265 * 225.00393 * 6 3 2 8 8 C 1.33553 * 115.76473 * 179.97438 * 7 6 3 9 9 C 1.47265 * 123.13815 * 179.97438 * 8 7 6 10 10 O 1.21636 * 120.00306 * 179.71827 * 9 8 7 11 11 N 1.34780 * 120.00324 * 359.97438 * 9 8 7 12 12 C 1.46497 * 120.00147 * 179.72261 * 11 9 8 13 13 H 1.08999 * 109.49882 * 35.06637 * 12 11 9 14 14 C 1.53047 * 109.49392 * 155.16070 * 12 11 9 15 15 C 1.53047 * 109.53673 * 181.31841 * 14 12 11 16 16 C 1.53197 * 109.30754 * 298.63475 * 15 14 12 17 17 N 1.46925 * 108.77880 * 54.63612 * 16 15 14 18 18 C 1.36933 * 120.62784 * 126.40768 * 17 16 15 19 19 H 1.07999 * 120.00782 * 332.58840 * 18 17 16 20 20 C 1.38822 * 119.99753 * 152.59462 * 18 17 16 21 21 N 1.31614 * 119.99790 * 159.36444 * 20 18 17 22 22 Si 1.86801 * 119.99691 * 339.36399 * 20 18 17 23 23 H 1.48491 * 109.47111 * 92.92218 * 22 20 18 24 24 H 1.48503 * 109.46598 * 212.92265 * 22 20 18 25 25 H 1.48496 * 109.47067 * 332.91740 * 22 20 18 26 26 C 1.46920 * 118.73766 * 306.39081 * 17 16 15 27 27 C 1.35208 * 113.72179 * 0.26004 * 8 7 6 28 28 S 1.70774 * 124.72045 * 44.99477 * 6 3 2 29 29 H 1.08998 * 109.46938 * 299.99926 * 1 2 3 30 30 H 1.09002 * 109.47042 * 59.99946 * 1 2 3 31 31 H 1.09005 * 109.46990 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46531 * 60.00178 * 5 3 2 33 33 H 1.08992 * 109.47272 * 180.02562 * 5 3 2 34 34 H 1.09004 * 109.46970 * 300.00443 * 5 3 2 35 35 H 0.96998 * 119.99248 * 359.72135 * 11 9 8 36 36 H 1.09001 * 109.46058 * 301.33743 * 14 12 11 37 37 H 1.08996 * 109.45854 * 61.29741 * 14 12 11 38 38 H 1.08994 * 109.49734 * 178.68646 * 15 14 12 39 39 H 1.09004 * 109.49471 * 58.58351 * 15 14 12 40 40 H 1.09001 * 109.58750 * 294.84588 * 16 15 14 41 41 H 1.09002 * 109.69569 * 174.48987 * 16 15 14 42 42 H 0.97009 * 119.99295 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.58605 * 293.81756 * 26 17 16 44 44 H 1.09003 * 109.58677 * 173.39311 * 26 17 16 45 45 H 1.08001 * 125.58588 * 179.68999 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2639 0.7103 7 7 3.7326 2.1275 1.5787 8 6 4.9449 1.9170 2.0981 9 6 5.5549 2.8034 3.1035 10 8 6.6618 2.5545 3.5422 11 7 4.8847 3.8876 3.5415 12 6 5.4890 4.7660 4.5461 13 1 6.5656 4.8179 4.3837 14 6 4.8858 6.1676 4.4283 15 6 5.5400 7.0944 5.4556 16 6 5.2609 6.5648 6.8658 17 7 5.7076 5.1672 6.9431 18 6 6.5716 4.7644 7.9262 19 1 7.2631 5.4712 8.3604 20 6 6.5587 3.4472 8.3645 21 7 7.6083 2.9493 8.9831 22 14 5.0517 2.3817 8.0763 23 1 5.2120 1.6311 6.8052 24 1 4.9004 1.4240 9.2011 25 1 3.8449 3.2431 7.9940 26 6 5.2094 4.2101 5.9460 27 6 5.5623 0.8176 1.6101 28 16 4.5306 0.0638 0.4747 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2568 1.8014 -1.9563 33 1 2.6614 2.7669 -1.4425 34 1 2.8829 1.0774 -1.9564 35 1 4.0022 4.0863 3.1913 36 1 5.0620 6.5556 3.4251 37 1 3.8131 6.1181 4.6151 38 1 5.1267 8.0979 5.3555 39 1 6.6162 7.1248 5.2848 40 1 4.1918 6.6186 7.0714 41 1 5.8043 7.1631 7.5972 42 1 7.5991 2.0290 9.2897 43 1 4.1360 4.0719 6.0766 44 1 5.7205 3.2552 6.0687 45 1 6.5459 0.4718 1.8921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007344511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:52 Heat of formation + Delta-G solvation = -10.337856 kcal Electronic energy + Delta-G solvation = -27494.928126 eV Core-core repulsion = 23640.322929 eV Total energy + Delta-G solvation = -3854.605198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.59794 -39.20174 -38.40824 -37.37109 -34.27632 -32.89843 -32.64531 -30.66610 -29.98810 -29.26218 -27.32875 -25.92032 -25.25128 -24.05916 -22.62073 -21.75935 -21.02164 -19.99942 -19.54163 -18.66920 -16.84688 -16.78286 -16.65168 -16.45346 -15.86877 -15.58388 -15.23607 -15.04546 -14.37648 -14.22583 -13.92393 -13.75778 -13.63254 -13.35261 -13.20259 -13.08496 -12.75009 -12.72484 -12.36624 -12.17598 -12.15903 -12.01088 -11.55215 -11.53108 -11.07264 -10.72437 -10.57415 -10.35758 -10.21106 -10.18050 -10.09033 -9.83530 -9.77517 -9.72227 -9.41245 -9.12451 -8.81117 -8.44905 -6.92270 -5.88877 -3.24743 0.34008 1.02443 1.46342 1.84739 2.92779 3.41132 3.44565 3.50361 3.53179 3.55754 3.95946 4.43319 4.60235 4.60989 4.67369 4.85627 4.95115 5.01347 5.10540 5.13314 5.18797 5.22625 5.26273 5.28594 5.30555 5.52324 5.53731 5.63659 5.69377 5.85814 6.00044 6.07849 6.24922 6.29726 6.47990 6.55339 6.59278 6.67005 6.68521 6.83487 6.97501 7.18385 7.80265 8.01779 8.39135 8.44900 8.99150 9.78420 10.14570 11.26986 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.003128 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.992137 B = 8950.611209 C = 9477.418662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.164 3.836 4 H 0.094 0.906 5 C -0.169 4.169 6 C 0.013 3.987 7 N -0.435 5.435 8 C 0.015 3.985 9 C 0.587 3.413 10 O -0.521 6.521 11 N -0.707 5.707 12 C 0.125 3.875 13 H 0.093 0.907 14 C -0.116 4.116 15 C -0.132 4.132 16 C 0.145 3.855 17 N -0.601 5.601 18 C -0.263 4.263 19 H 0.087 0.913 20 C 0.029 3.971 21 N -0.904 5.904 22 Si 0.879 3.121 23 H -0.287 1.287 24 H -0.303 1.303 25 H -0.272 1.272 26 C 0.120 3.880 27 C -0.229 4.229 28 S 0.247 5.753 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.403 0.597 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.065 0.935 42 H 0.262 0.738 43 H 0.024 0.976 44 H 0.079 0.921 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 -2.664 -23.977 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.103 3.897 4 H 0.111 0.889 5 C -0.227 4.227 6 C -0.266 4.266 7 N -0.152 5.152 8 C -0.121 4.121 9 C 0.369 3.631 10 O -0.396 6.396 11 N -0.357 5.357 12 C 0.019 3.981 13 H 0.111 0.889 14 C -0.154 4.154 15 C -0.171 4.171 16 C 0.019 3.981 17 N -0.325 5.325 18 C -0.391 4.391 19 H 0.105 0.895 20 C -0.171 4.171 21 N -0.547 5.547 22 Si 0.709 3.291 23 H -0.215 1.215 24 H -0.231 1.231 25 H -0.197 1.197 26 C -0.006 4.006 27 C -0.371 4.371 28 S 0.504 5.496 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.042 0.958 44 H 0.097 0.903 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.617 -3.554 -23.988 27.811 hybrid contribution -1.039 0.101 0.450 1.137 sum -14.656 -3.453 -23.537 27.942 Atomic orbital electron populations 1.22860 0.79753 1.03351 1.00468 1.87906 1.20676 1.26353 1.95106 1.20276 0.88341 0.86118 0.94943 0.88851 1.22299 1.03320 1.02523 0.94600 1.26699 1.02079 0.96944 1.00901 1.66819 1.12898 1.27265 1.08200 1.20504 0.91144 0.98067 1.02344 1.17063 0.84935 0.80669 0.80459 1.90894 1.19211 1.72145 1.57393 1.45937 1.21167 1.26081 1.42509 1.21830 0.99062 0.88629 0.88543 0.88889 1.21677 1.00059 0.94449 0.99199 1.22000 1.01030 0.97310 0.96809 1.20990 0.96948 0.86009 0.94132 1.44288 1.54018 1.04537 1.29657 1.18892 1.11052 0.96117 1.13020 0.89514 1.25248 0.97131 0.97057 0.97638 1.69835 1.27620 1.14833 1.42397 0.86992 0.85627 0.80375 0.76084 1.21506 1.23095 1.19676 1.21694 0.97000 0.94920 0.87029 1.26799 1.07326 0.99907 1.03109 1.82835 1.05364 1.26221 1.35167 0.93460 0.93549 0.89054 0.91001 0.90642 0.91248 0.76251 0.92387 0.92046 0.92102 0.91603 0.95916 0.91606 0.92773 0.95781 0.90320 0.79044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.38 -3.28 10.17 -35.23 -0.36 -3.64 16 3 C 0.16 1.38 3.23 -27.88 -0.09 1.29 16 4 H 0.09 0.73 7.79 -51.93 -0.40 0.33 16 5 C -0.17 -1.05 9.51 37.16 0.35 -0.69 16 6 C 0.01 0.14 6.30 -13.61 -0.09 0.06 16 7 N -0.43 -5.96 10.12 -8.51 -0.09 -6.05 16 8 C 0.01 0.23 6.70 -84.53 -0.57 -0.33 16 9 C 0.59 11.17 7.76 -12.59 -0.10 11.07 16 10 O -0.52 -11.96 16.38 5.25 0.09 -11.87 16 11 N -0.71 -12.35 5.08 -54.81 -0.28 -12.62 16 12 C 0.12 2.43 2.60 -67.81 -0.18 2.25 16 13 H 0.09 2.04 7.58 -51.93 -0.39 1.65 16 14 C -0.12 -1.80 5.35 -26.68 -0.14 -1.95 16 15 C -0.13 -2.13 6.08 -26.60 -0.16 -2.30 16 16 C 0.15 2.88 6.52 -3.71 -0.02 2.85 16 17 N -0.60 -14.97 2.77 -172.32 -0.48 -15.44 16 18 C -0.26 -7.68 10.03 -15.06 -0.15 -7.83 16 19 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 20 C 0.03 0.88 5.23 -17.43 -0.09 0.79 16 21 N -0.90 -29.10 13.97 55.49 0.78 -28.33 16 22 Si 0.88 24.08 24.34 -169.99 -4.14 19.94 16 23 H -0.29 -7.98 6.62 56.52 0.37 -7.61 16 24 H -0.30 -8.29 7.11 56.52 0.40 -7.89 16 25 H -0.27 -7.22 6.63 56.52 0.38 -6.84 16 26 C 0.12 2.86 3.78 -3.71 -0.01 2.84 16 27 C -0.23 -3.07 10.62 29.65 0.31 -2.75 16 28 S 0.25 2.49 22.73 -107.50 -2.44 0.05 16 29 H 0.05 0.26 8.08 -51.93 -0.42 -0.16 16 30 H 0.05 0.18 7.87 -51.93 -0.41 -0.23 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.40 5.96 8.12 -40.82 -0.33 5.63 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 42 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 43 H 0.02 0.57 7.07 -51.93 -0.37 0.20 16 44 H 0.08 2.17 4.50 -51.93 -0.23 1.93 16 45 H 0.19 2.43 8.03 -52.49 -0.42 2.01 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -36.13 376.81 -7.88 -44.01 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.79 Total: 1.71 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 0.16 Total: 6.57 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.07 Total: -62.44 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.27 Total: -15.51 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -4.14 Total: 19.94 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.44 Total: 0.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.13 -7.88 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007344511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.667 kcal (2) G-P(sol) polarization free energy of solvation -36.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds