Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99901 * 2 1 4 4 H 1.09003 * 109.47185 * 329.99486 * 3 2 1 5 5 C 1.52999 * 109.47285 * 89.99918 * 3 2 1 6 6 C 1.50698 * 109.47157 * 210.00274 * 3 2 1 7 7 N 1.28650 * 124.72651 * 135.25168 * 6 3 2 8 8 C 1.33561 * 115.76664 * 180.22434 * 7 6 3 9 9 C 1.47268 * 123.13895 * 179.83000 * 8 7 6 10 10 O 1.21626 * 120.00099 * 179.73277 * 9 8 7 11 11 N 1.34772 * 119.99873 * 359.72619 * 9 8 7 12 12 C 1.46499 * 120.00064 * 180.02562 * 11 9 8 13 13 H 1.09009 * 109.49868 * 324.99912 * 12 11 9 14 14 C 1.53035 * 109.50171 * 204.93932 * 12 11 9 15 15 C 1.53038 * 109.54138 * 178.64900 * 14 12 11 16 16 C 1.53191 * 109.31353 * 61.36381 * 15 14 12 17 17 N 1.46924 * 108.77346 * 305.36502 * 16 15 14 18 18 C 1.36938 * 120.63373 * 233.60745 * 17 16 15 19 19 H 1.08008 * 119.99728 * 27.67904 * 18 17 16 20 20 C 1.38809 * 120.00605 * 207.68056 * 18 17 16 21 21 N 1.31625 * 119.99585 * 17.36154 * 20 18 17 22 22 Si 1.86799 * 120.00463 * 197.35919 * 20 18 17 23 23 H 1.48497 * 109.46792 * 89.99774 * 22 20 18 24 24 H 1.48491 * 109.47144 * 210.00096 * 22 20 18 25 25 H 1.48501 * 109.46759 * 330.00184 * 22 20 18 26 26 C 1.46926 * 118.74062 * 53.61059 * 17 16 15 27 27 C 1.35209 * 113.71954 * 359.55920 * 8 7 6 28 28 S 1.70777 * 124.71719 * 315.02348 * 6 3 2 29 29 H 1.08997 * 109.46742 * 60.00033 * 1 2 3 30 30 H 1.08997 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46670 * 300.00566 * 1 2 3 32 32 H 1.09006 * 109.46909 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46808 * 299.99745 * 5 3 2 34 34 H 1.09000 * 109.46993 * 60.00036 * 5 3 2 35 35 H 0.96999 * 120.00381 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.45869 * 298.66905 * 14 12 11 37 37 H 1.08997 * 109.46421 * 58.62673 * 14 12 11 38 38 H 1.09000 * 109.49906 * 181.31204 * 15 14 12 39 39 H 1.08995 * 109.49718 * 301.37759 * 15 14 12 40 40 H 1.09002 * 109.59190 * 65.15098 * 16 15 14 41 41 H 1.08998 * 109.58617 * 185.43429 * 16 15 14 42 42 H 0.96995 * 119.99770 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.58842 * 186.60378 * 26 17 16 44 44 H 1.08996 * 109.58482 * 66.17497 * 26 17 16 45 45 H 1.07995 * 125.58896 * 180.23604 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2639 -0.7105 7 7 3.7345 2.1301 -1.5754 8 6 4.9447 1.9168 -2.0987 9 6 5.5547 2.8032 -3.1042 10 8 6.6636 2.5571 -3.5391 11 7 4.8841 3.8869 -3.5425 12 6 5.4906 4.7684 -4.5432 13 1 6.5667 4.8211 -4.3772 14 6 4.8863 6.1693 -4.4234 15 6 5.5433 7.0993 -5.4459 16 6 5.2693 6.5737 -6.8584 17 7 5.7171 5.1767 -6.9383 18 6 6.5850 4.7771 -7.9193 19 1 7.2806 5.4847 -8.3458 20 6 6.5707 3.4628 -8.3655 21 7 5.5317 2.6943 -8.1159 22 14 8.0260 2.7846 -9.3203 23 1 9.0054 2.1916 -8.3747 24 1 7.5550 1.7402 -10.2649 25 1 8.6746 3.8833 -10.0803 26 6 5.2161 4.2163 -5.9455 27 6 5.5599 0.8143 -1.6147 28 16 4.5303 0.0635 -0.4753 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.6615 2.7671 1.4424 33 1 1.2569 1.8015 1.9562 34 1 2.8830 1.0775 1.9563 35 1 3.9996 4.0830 -3.1960 36 1 3.8142 6.1197 -4.6139 37 1 5.0589 6.5546 -3.4185 38 1 5.1290 8.1024 -5.3443 39 1 6.6187 7.1305 -5.2710 40 1 4.2008 6.6274 -7.0675 41 1 5.8144 7.1765 -7.5847 42 1 5.5218 1.7758 -8.4274 43 1 5.7282 3.2621 -6.0693 44 1 4.1434 4.0779 -6.0801 45 1 6.5410 0.4653 -1.9010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007344517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -16.172433 kcal Electronic energy + Delta-G solvation = -27342.107439 eV Core-core repulsion = 23487.249235 eV Total energy + Delta-G solvation = -3854.858204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.46098 -39.02780 -38.25928 -37.09742 -34.07993 -32.81303 -32.60252 -30.03449 -29.83451 -28.91782 -27.25614 -25.77834 -25.22226 -23.88474 -22.16233 -21.76240 -20.89987 -19.78767 -19.33339 -18.52154 -16.76560 -16.70002 -16.47325 -16.32504 -15.78329 -15.26656 -15.05987 -14.76380 -14.26984 -14.02744 -13.76947 -13.60765 -13.43124 -13.24888 -13.08015 -12.93424 -12.65339 -12.34318 -12.27648 -12.09549 -12.04621 -11.76423 -11.45489 -10.97989 -10.72362 -10.69666 -10.43960 -10.27921 -10.20302 -10.01072 -9.98099 -9.89541 -9.73234 -9.56439 -9.45883 -9.01011 -8.46413 -8.38442 -6.61679 -5.70942 -3.14417 0.44370 1.12335 1.56245 1.97858 3.02005 3.45917 3.52857 3.53500 3.60797 3.68093 4.05714 4.52796 4.58276 4.68753 4.77235 4.92431 5.02456 5.18224 5.20974 5.27369 5.32976 5.35272 5.40533 5.45057 5.58472 5.66741 5.69891 5.71929 5.84673 6.12226 6.20095 6.37690 6.46130 6.54030 6.63031 6.74322 6.81302 6.97346 7.00457 7.27383 7.37737 7.77552 7.87425 8.01329 8.52061 8.63859 9.27171 9.91408 10.46359 11.36888 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002913 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.169229 B = 9610.601992 C =10414.882847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.164 3.836 4 H 0.094 0.906 5 C -0.169 4.169 6 C 0.013 3.987 7 N -0.433 5.433 8 C 0.019 3.981 9 C 0.588 3.412 10 O -0.526 6.526 11 N -0.700 5.700 12 C 0.116 3.884 13 H 0.083 0.917 14 C -0.115 4.115 15 C -0.130 4.130 16 C 0.142 3.858 17 N -0.588 5.588 18 C -0.256 4.256 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.902 3.098 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.167 3.833 27 C -0.230 4.230 28 S 0.241 5.759 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.401 0.599 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.055 0.945 42 H 0.253 0.747 43 H 0.095 0.905 44 H 0.018 0.982 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.874 -2.768 21.733 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.103 3.897 4 H 0.112 0.888 5 C -0.227 4.227 6 C -0.266 4.266 7 N -0.151 5.151 8 C -0.117 4.117 9 C 0.370 3.630 10 O -0.402 6.402 11 N -0.350 5.350 12 C 0.011 3.989 13 H 0.101 0.899 14 C -0.154 4.154 15 C -0.170 4.170 16 C 0.016 3.984 17 N -0.311 5.311 18 C -0.386 4.386 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.040 3.960 27 C -0.372 4.372 28 S 0.497 5.503 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.113 0.887 44 H 0.036 0.964 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.267 -3.684 21.789 23.963 hybrid contribution 0.415 0.418 -1.051 1.205 sum -8.852 -3.266 20.738 22.784 Atomic orbital electron populations 1.22857 0.79800 1.03309 1.00466 1.87907 1.20638 1.26384 1.95104 1.20270 0.88414 0.86096 0.94889 0.88832 1.22297 1.03257 1.02502 0.94672 1.26680 1.01978 0.96895 1.01026 1.66829 1.12895 1.27233 1.08095 1.20568 0.91091 0.97906 1.02114 1.16986 0.84941 0.80662 0.80375 1.90860 1.19298 1.72282 1.57788 1.45885 1.20721 1.25856 1.42537 1.22039 0.98096 0.88275 0.90537 0.89895 1.21668 1.00090 0.95008 0.98592 1.22000 1.00524 0.97103 0.97396 1.20954 0.96764 0.87292 0.93405 1.43968 1.53120 1.03639 1.30387 1.19158 1.10496 0.95235 1.13671 0.91554 1.25040 0.97089 0.98367 0.98838 1.70027 1.27380 1.07658 1.49186 0.86293 0.82600 0.78661 0.79242 1.21262 1.21802 1.20422 1.21091 0.97024 0.95015 0.82852 1.26762 1.07287 1.00003 1.03182 1.82796 1.05662 1.26630 1.35177 0.93413 0.89092 0.93608 0.90664 0.91054 0.91293 0.76481 0.92193 0.93058 0.92607 0.92104 0.96410 0.92609 0.93683 0.88714 0.96434 0.79178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.29 16 2 O -0.38 -3.48 10.17 -35.23 -0.36 -3.84 16 3 C 0.16 1.48 3.23 -27.88 -0.09 1.39 16 4 H 0.09 0.79 7.79 -51.93 -0.40 0.39 16 5 C -0.17 -1.13 9.51 37.16 0.35 -0.78 16 6 C 0.01 0.16 6.30 -13.61 -0.09 0.07 16 7 N -0.43 -6.25 10.12 -8.51 -0.09 -6.33 16 8 C 0.02 0.30 6.70 -84.52 -0.57 -0.26 16 9 C 0.59 11.61 7.76 -12.59 -0.10 11.51 16 10 O -0.53 -12.34 16.38 5.25 0.09 -12.26 16 11 N -0.70 -12.97 5.08 -54.81 -0.28 -13.25 16 12 C 0.12 2.39 2.60 -67.81 -0.18 2.22 16 13 H 0.08 1.91 7.58 -51.92 -0.39 1.52 16 14 C -0.12 -1.97 5.35 -26.69 -0.14 -2.11 16 15 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 16 C 0.14 3.03 6.51 -3.71 -0.02 3.01 16 17 N -0.59 -15.38 2.99 -172.32 -0.52 -15.89 16 18 C -0.26 -7.35 9.59 -15.06 -0.14 -7.49 16 19 H 0.07 1.85 7.89 -52.48 -0.41 1.44 16 20 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 21 N -0.90 -27.49 11.19 55.49 0.62 -26.86 16 22 Si 0.90 22.95 29.59 -169.99 -5.03 17.92 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 26 C 0.17 4.25 4.89 -3.71 -0.02 4.23 16 27 C -0.23 -3.19 10.62 29.65 0.31 -2.88 16 28 S 0.24 2.55 22.73 -107.50 -2.44 0.10 16 29 H 0.05 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.20 7.87 -51.93 -0.41 -0.21 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.40 6.46 8.12 -40.82 -0.33 6.13 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 42 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.09 2.82 6.04 -51.93 -0.31 2.51 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.19 2.50 8.03 -52.49 -0.42 2.08 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -34.59 383.24 -8.93 -43.52 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.87 Total: 3.28 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 0.17 Total: 7.84 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.26 Total: -62.34 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.27 Total: -16.09 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.92 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.44 Total: 0.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.59 -8.93 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007344517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.345 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds