Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99901 * 2 1 4 4 H 1.09003 * 109.47185 * 329.99486 * 3 2 1 5 5 C 1.52999 * 109.47285 * 89.99918 * 3 2 1 6 6 C 1.50698 * 109.47157 * 210.00274 * 3 2 1 7 7 N 1.28650 * 124.72651 * 135.25168 * 6 3 2 8 8 C 1.33561 * 115.76664 * 180.22434 * 7 6 3 9 9 C 1.47268 * 123.13895 * 179.83000 * 8 7 6 10 10 O 1.21626 * 120.00099 * 179.73277 * 9 8 7 11 11 N 1.34772 * 119.99873 * 359.72619 * 9 8 7 12 12 C 1.46499 * 120.00064 * 180.02562 * 11 9 8 13 13 H 1.09009 * 109.49868 * 324.99912 * 12 11 9 14 14 C 1.53035 * 109.50171 * 204.93932 * 12 11 9 15 15 C 1.53038 * 109.54138 * 178.64900 * 14 12 11 16 16 C 1.53191 * 109.31353 * 61.36381 * 15 14 12 17 17 N 1.46924 * 108.77346 * 305.36502 * 16 15 14 18 18 C 1.36938 * 120.63373 * 233.60745 * 17 16 15 19 19 H 1.08008 * 119.99728 * 27.67904 * 18 17 16 20 20 C 1.38809 * 120.00605 * 207.68056 * 18 17 16 21 21 N 1.31625 * 119.99585 * 17.36154 * 20 18 17 22 22 Si 1.86799 * 120.00463 * 197.35919 * 20 18 17 23 23 H 1.48497 * 109.46792 * 89.99774 * 22 20 18 24 24 H 1.48491 * 109.47144 * 210.00096 * 22 20 18 25 25 H 1.48501 * 109.46759 * 330.00184 * 22 20 18 26 26 C 1.46926 * 118.74062 * 53.61059 * 17 16 15 27 27 C 1.35209 * 113.71954 * 359.55920 * 8 7 6 28 28 S 1.70777 * 124.71719 * 315.02348 * 6 3 2 29 29 H 1.08997 * 109.46742 * 60.00033 * 1 2 3 30 30 H 1.08997 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46670 * 300.00566 * 1 2 3 32 32 H 1.09006 * 109.46909 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46808 * 299.99745 * 5 3 2 34 34 H 1.09000 * 109.46993 * 60.00036 * 5 3 2 35 35 H 0.96999 * 120.00381 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.45869 * 298.66905 * 14 12 11 37 37 H 1.08997 * 109.46421 * 58.62673 * 14 12 11 38 38 H 1.09000 * 109.49906 * 181.31204 * 15 14 12 39 39 H 1.08995 * 109.49718 * 301.37759 * 15 14 12 40 40 H 1.09002 * 109.59190 * 65.15098 * 16 15 14 41 41 H 1.08998 * 109.58617 * 185.43429 * 16 15 14 42 42 H 0.96995 * 119.99770 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.58842 * 186.60378 * 26 17 16 44 44 H 1.08996 * 109.58482 * 66.17497 * 26 17 16 45 45 H 1.07995 * 125.58896 * 180.23604 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2639 -0.7105 7 7 3.7345 2.1301 -1.5754 8 6 4.9447 1.9168 -2.0987 9 6 5.5547 2.8032 -3.1042 10 8 6.6636 2.5571 -3.5391 11 7 4.8841 3.8869 -3.5425 12 6 5.4906 4.7684 -4.5432 13 1 6.5667 4.8211 -4.3772 14 6 4.8863 6.1693 -4.4234 15 6 5.5433 7.0993 -5.4459 16 6 5.2693 6.5737 -6.8584 17 7 5.7171 5.1767 -6.9383 18 6 6.5850 4.7771 -7.9193 19 1 7.2806 5.4847 -8.3458 20 6 6.5707 3.4628 -8.3655 21 7 5.5317 2.6943 -8.1159 22 14 8.0260 2.7846 -9.3203 23 1 9.0054 2.1916 -8.3747 24 1 7.5550 1.7402 -10.2649 25 1 8.6746 3.8833 -10.0803 26 6 5.2161 4.2163 -5.9455 27 6 5.5599 0.8143 -1.6147 28 16 4.5303 0.0635 -0.4753 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.6615 2.7671 1.4424 33 1 1.2569 1.8015 1.9562 34 1 2.8830 1.0775 1.9563 35 1 3.9996 4.0830 -3.1960 36 1 3.8142 6.1197 -4.6139 37 1 5.0589 6.5546 -3.4185 38 1 5.1290 8.1024 -5.3443 39 1 6.6187 7.1305 -5.2710 40 1 4.2008 6.6274 -7.0675 41 1 5.8144 7.1765 -7.5847 42 1 5.5218 1.7758 -8.4274 43 1 5.7282 3.2621 -6.0693 44 1 4.1434 4.0779 -6.0801 45 1 6.5410 0.4653 -1.9010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007344517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -41.561712 kcal Electronic energy + Delta-G solvation = -27343.208401 eV Core-core repulsion = 23487.249235 eV Total energy + Delta-G solvation = -3855.959166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69742 -40.29887 -39.19336 -38.69706 -35.88276 -34.47154 -33.56473 -31.95760 -30.93521 -30.46388 -27.77101 -27.29143 -26.83373 -24.95854 -23.96400 -23.16231 -22.08447 -21.25998 -20.76717 -19.75785 -18.76398 -17.78959 -17.43917 -17.26424 -16.98965 -16.58903 -16.55818 -16.10623 -15.84476 -15.37134 -15.36122 -15.08040 -14.78375 -14.61749 -14.18990 -14.03373 -14.00000 -13.63064 -13.54675 -13.26023 -12.98588 -12.95035 -12.71309 -12.62913 -12.53590 -12.29440 -12.06017 -12.03837 -11.75389 -11.66941 -11.31085 -11.18784 -10.97324 -10.88661 -10.65663 -10.59328 -10.26056 -9.92635 -8.72896 -7.91301 -5.37614 -0.60617 0.16558 0.54968 0.78086 1.39133 1.44863 1.50911 2.04848 2.26649 2.36731 2.48324 3.21218 3.25775 3.58644 3.73836 3.90103 4.02087 4.06389 4.08341 4.10276 4.22160 4.24935 4.44729 4.52246 4.55043 4.59736 4.66730 4.75156 4.78992 4.87614 4.89416 4.92463 5.06598 5.16767 5.18215 5.22601 5.28268 5.37903 5.49981 5.59240 5.72048 6.03545 6.21014 6.34244 6.57659 7.07485 7.15115 7.81750 8.31606 9.13657 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002913 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.169229 B = 9610.601992 C =10414.882847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.163 3.837 4 H 0.098 0.902 5 C -0.164 4.164 6 C 0.004 3.996 7 N -0.450 5.450 8 C -0.009 4.009 9 C 0.583 3.417 10 O -0.576 6.576 11 N -0.691 5.691 12 C 0.129 3.871 13 H 0.056 0.944 14 C -0.107 4.107 15 C -0.120 4.120 16 C 0.135 3.865 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.071 0.929 20 C -0.053 4.053 21 N -0.932 5.932 22 Si 0.964 3.036 23 H -0.294 1.294 24 H -0.291 1.291 25 H -0.260 1.260 26 C 0.181 3.819 27 C -0.245 4.245 28 S 0.326 5.674 29 H 0.045 0.955 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.059 0.941 42 H 0.246 0.754 43 H 0.043 0.957 44 H -0.003 1.003 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 -1.938 24.107 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.102 3.898 4 H 0.115 0.885 5 C -0.223 4.223 6 C -0.275 4.275 7 N -0.167 5.167 8 C -0.144 4.144 9 C 0.367 3.633 10 O -0.456 6.456 11 N -0.341 5.341 12 C 0.023 3.977 13 H 0.074 0.926 14 C -0.144 4.144 15 C -0.159 4.159 16 C 0.010 3.990 17 N -0.333 5.333 18 C -0.394 4.394 19 H 0.089 0.911 20 C -0.249 4.249 21 N -0.578 5.578 22 Si 0.792 3.208 23 H -0.222 1.222 24 H -0.218 1.218 25 H -0.184 1.184 26 C 0.054 3.946 27 C -0.388 4.388 28 S 0.584 5.416 29 H 0.064 0.936 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.251 0.749 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.015 0.985 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.520 -2.812 24.195 26.533 hybrid contribution 0.699 0.093 -1.713 1.853 sum -9.821 -2.719 22.482 24.684 Atomic orbital electron populations 1.23058 0.78211 1.04384 1.01368 1.87864 1.22364 1.26329 1.95266 1.20432 0.87006 0.86413 0.95932 0.88473 1.22287 1.04576 1.02335 0.93056 1.27339 1.03445 0.96619 1.00065 1.66785 1.12133 1.28599 1.09203 1.20140 0.92654 0.98595 1.03056 1.17537 0.84445 0.80799 0.80498 1.90816 1.21510 1.73479 1.59774 1.45751 1.21179 1.25449 1.41729 1.21633 0.97160 0.90715 0.88178 0.92583 1.21645 1.00345 0.92004 1.00454 1.21899 1.00529 0.99057 0.94430 1.21196 0.96766 0.84687 0.96373 1.44256 1.53206 1.05597 1.30243 1.19538 1.10804 0.95509 1.13548 0.91100 1.25841 0.99494 0.98896 1.00620 1.70192 1.29277 1.07439 1.50916 0.85308 0.79363 0.78271 0.77851 1.22153 1.21760 1.18371 1.20745 0.94695 0.93397 0.85783 1.27004 1.08013 0.99831 1.03909 1.82492 1.02936 1.24142 1.32046 0.93619 0.88009 0.91613 0.90718 0.88935 0.91048 0.74874 0.90925 0.89666 0.88187 0.92774 0.96085 0.92291 0.94457 0.93843 0.98546 0.79261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 113.37 1.23 1.47 16 2 O -0.40 -6.32 10.17 -148.98 -1.51 -7.84 16 3 C 0.16 2.58 3.23 29.85 0.10 2.67 16 4 H 0.10 1.46 7.79 -2.39 -0.02 1.44 16 5 C -0.16 -1.73 9.51 71.98 0.68 -1.04 16 6 C 0.00 0.10 6.30 88.57 0.56 0.66 16 7 N -0.45 -12.78 10.12 -180.83 -1.83 -14.61 16 8 C -0.01 -0.30 6.70 40.56 0.27 -0.02 16 9 C 0.58 24.13 7.76 86.62 0.67 24.80 16 10 O -0.58 -28.84 16.38 -4.11 -0.07 -28.91 16 11 N -0.69 -26.27 5.08 -445.58 -2.26 -28.53 16 12 C 0.13 5.46 2.60 45.07 0.12 5.57 16 13 H 0.06 2.68 7.58 -2.38 -0.02 2.67 16 14 C -0.11 -3.41 5.35 30.62 0.16 -3.24 16 15 C -0.12 -3.88 6.08 30.67 0.19 -3.70 16 16 C 0.13 5.63 6.51 86.36 0.56 6.19 16 17 N -0.61 -32.63 2.99 -699.11 -2.09 -34.72 16 18 C -0.26 -15.52 9.59 84.03 0.81 -14.71 16 19 H 0.07 4.01 7.89 -2.91 -0.02 3.98 16 20 C -0.05 -3.21 4.91 84.86 0.42 -2.80 16 21 N -0.93 -59.82 11.19 21.65 0.24 -59.58 16 22 Si 0.96 48.70 29.59 68.60 2.03 50.73 16 23 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 24 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 25 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 26 C 0.18 9.64 4.89 86.36 0.42 10.06 16 27 C -0.24 -6.84 10.62 67.12 0.71 -6.12 16 28 S 0.33 6.33 22.73 -56.49 -1.28 5.05 16 29 H 0.05 0.46 8.08 -2.39 -0.02 0.44 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.37 7.87 -2.39 -0.02 0.35 16 32 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.09 0.60 7.87 -2.39 -0.02 0.58 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.41 13.34 8.12 -92.71 -0.75 12.59 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 2.39 7.94 -2.39 -0.02 2.37 16 42 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.04 2.76 6.04 -2.39 -0.01 2.74 16 44 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.19 5.18 8.03 -2.91 -0.02 5.15 16 Total: -1.00 -80.25 383.24 0.36 -79.88 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.25 Total: 18.74 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 6.90 Total: 19.78 kcal Atomic # 7 Polarization: -131.49 SS G_CDS: -5.94 Total: -137.44 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.58 Total: -36.75 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -1.28 Total: 5.05 kcal Total: -80.25 0.36 -79.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007344517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.321 kcal (2) G-P(sol) polarization free energy of solvation -80.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds