Wall clock time and date at job start Sat Apr 11 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35970 * 116.99828 * 2 1 4 4 C 1.37563 * 120.82282 * 179.97438 * 3 2 1 5 5 C 1.38042 * 114.24871 * 179.97438 * 4 3 2 6 6 C 1.47111 * 127.76313 * 180.02562 * 5 4 3 7 7 O 1.21635 * 119.99932 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00451 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00215 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.47192 * 34.99976 * 9 8 6 11 11 C 1.52994 * 109.46947 * 274.99705 * 9 8 6 12 12 C 1.52999 * 109.47180 * 154.99867 * 9 8 6 13 13 H 1.09005 * 109.49994 * 304.93466 * 12 9 8 14 14 C 1.53031 * 109.50175 * 184.83585 * 12 9 8 15 15 C 1.53034 * 109.54355 * 178.68366 * 14 12 9 16 16 C 1.53191 * 109.31408 * 61.36519 * 15 14 12 17 17 N 1.46921 * 108.77407 * 305.36729 * 16 15 14 18 18 C 1.36936 * 120.63293 * 233.58036 * 17 16 15 19 19 H 1.08001 * 119.99858 * 151.84170 * 18 17 16 20 20 C 1.38815 * 119.99936 * 331.84974 * 18 17 16 21 21 N 1.31617 * 119.99760 * 343.07184 * 20 18 17 22 22 Si 1.86807 * 119.99693 * 163.06773 * 20 18 17 23 23 H 1.48502 * 109.46807 * 60.00382 * 22 20 18 24 24 H 1.48504 * 109.46614 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47102 * 300.00081 * 22 20 18 26 26 C 1.46930 * 118.73985 * 53.60897 * 17 16 15 27 27 S 1.77234 * 104.47922 * 0.25686 * 5 4 3 28 28 N 1.30362 * 120.82565 * 359.97438 * 3 2 1 29 29 H 1.08996 * 109.46949 * 300.00058 * 1 2 3 30 30 H 1.08998 * 109.47133 * 60.00194 * 1 2 3 31 31 H 1.09006 * 109.46695 * 179.97438 * 1 2 3 32 32 H 1.08000 * 122.87931 * 359.97438 * 4 3 2 33 33 H 0.97006 * 119.99400 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47299 * 179.97438 * 11 9 8 35 35 H 1.08998 * 109.47576 * 60.00162 * 11 9 8 36 36 H 1.09002 * 109.47566 * 300.00159 * 11 9 8 37 37 H 1.09002 * 109.46230 * 298.70630 * 14 12 9 38 38 H 1.09009 * 109.45766 * 58.66035 * 14 12 9 39 39 H 1.09003 * 109.49763 * 301.41606 * 15 14 12 40 40 H 1.09001 * 109.52954 * 181.33896 * 15 14 12 41 41 H 1.08998 * 109.58810 * 185.57977 * 16 15 14 42 42 H 1.08999 * 109.70077 * 65.22392 * 16 15 14 43 43 H 0.97005 * 119.99660 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58664 * 186.60188 * 26 17 16 45 45 H 1.09003 * 109.58818 * 66.17587 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4188 1.3033 0.0005 5 6 3.9006 2.5969 -0.0001 6 6 5.3048 3.0353 -0.0003 7 8 6.1993 2.2111 0.0006 8 7 5.6003 4.3503 -0.0015 9 6 6.9988 4.7868 -0.0011 10 1 7.5968 4.0910 -0.5895 11 6 7.5222 4.8203 1.4361 12 6 7.0964 6.1861 -0.6121 13 1 6.6437 6.1826 -1.6037 14 6 8.5673 6.5937 -0.7230 15 6 8.6676 7.9796 -1.3642 16 6 7.9483 9.0012 -0.4778 17 7 6.5722 8.5412 -0.2470 18 6 5.5082 9.3589 -0.5200 19 1 4.5543 8.9313 -0.7915 20 6 5.6557 10.7373 -0.4480 21 7 6.6832 11.2567 0.1898 22 14 4.3959 11.8548 -1.2565 23 1 3.0586 11.6055 -0.6610 24 1 4.7787 13.2727 -1.0365 25 1 4.3488 11.5747 -2.7140 26 6 6.3593 7.1875 0.2829 27 16 2.4471 3.6110 0.0063 28 7 1.3521 2.3149 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0643 0.4374 0.0014 33 1 4.8870 5.0077 -0.0026 34 1 8.5628 5.1447 1.4364 35 1 7.4527 3.8235 1.8715 36 1 6.9241 5.5162 2.0246 37 1 9.0126 6.6207 0.2716 38 1 9.0994 5.8690 -1.3393 39 1 8.2004 7.9595 -2.3488 40 1 9.7162 8.2595 -1.4648 41 1 7.9309 9.9700 -0.9770 42 1 8.4684 9.0909 0.4759 43 1 6.7860 12.2200 0.2404 44 1 5.2934 6.9595 0.2855 45 1 6.7506 7.1268 1.2984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025422785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:02 Heat of formation + Delta-G solvation = -8.646232 kcal Electronic energy + Delta-G solvation = -27220.851116 eV Core-core repulsion = 23366.319273 eV Total energy + Delta-G solvation = -3854.531843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -40.55572 -39.96091 -38.14620 -36.71748 -35.29802 -33.16703 -31.90043 -30.84624 -30.49072 -28.43458 -28.09336 -25.53096 -25.33645 -23.72437 -22.34182 -21.81494 -20.43754 -20.17210 -18.95699 -18.59349 -17.97885 -16.86003 -16.56588 -16.34194 -16.06656 -15.22611 -15.06730 -14.88315 -14.46977 -14.35589 -13.89356 -13.70887 -13.65199 -13.49251 -13.13103 -12.61220 -12.47055 -12.36928 -12.30907 -11.88283 -11.74492 -11.63963 -11.45231 -11.12631 -11.02099 -10.95283 -10.61752 -10.54406 -10.33958 -10.23838 -10.09999 -10.02547 -9.90781 -9.67186 -9.43962 -9.12555 -8.69514 -8.48791 -6.69662 -5.82200 -3.25219 -0.14574 0.87518 1.24378 1.92922 2.56930 2.86931 3.11693 3.35883 3.42201 3.43064 4.29199 4.45324 4.65030 4.79325 4.89235 4.91760 4.98603 5.15263 5.19306 5.33334 5.36592 5.38228 5.51915 5.63035 5.65283 5.76464 5.79173 5.93201 6.05725 6.16644 6.19794 6.26019 6.40591 6.49659 6.54862 6.66498 6.67105 6.72710 6.82751 6.92760 7.30050 7.37307 7.64592 7.75595 7.92380 8.41362 9.17590 9.80927 10.37528 11.25979 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.002937 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.517027 B = 9531.894020 C =11336.782940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.295 6.295 3 C 0.303 3.697 4 C -0.131 4.131 5 C -0.181 4.181 6 C 0.593 3.407 7 O -0.520 6.520 8 N -0.707 5.707 9 C 0.150 3.850 10 H 0.087 0.913 11 C -0.167 4.167 12 C -0.115 4.115 13 H 0.074 0.926 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.590 5.590 18 C -0.256 4.256 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.150 3.850 27 S 0.301 5.699 28 N -0.511 5.511 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.178 0.822 33 H 0.403 0.597 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.046 0.954 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 -18.739 -0.041 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.201 6.201 3 C 0.090 3.910 4 C -0.169 4.169 5 C -0.313 4.313 6 C 0.376 3.624 7 O -0.396 6.396 8 N -0.358 5.358 9 C 0.046 3.954 10 H 0.105 0.895 11 C -0.225 4.225 12 C -0.136 4.136 13 H 0.092 0.908 14 C -0.138 4.138 15 C -0.182 4.182 16 C 0.044 3.956 17 N -0.312 5.312 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.194 4.194 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.023 3.977 27 S 0.451 5.549 28 N -0.353 5.353 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.195 0.805 33 H 0.239 0.761 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.323 -17.769 0.001 18.860 hybrid contribution -0.353 -0.422 -0.414 0.688 sum -6.676 -18.190 -0.412 19.381 Atomic orbital electron populations 1.22997 0.76608 1.03660 1.02681 1.86311 1.23074 1.22487 1.88251 1.19911 0.89795 0.85312 0.95981 1.20740 0.92312 0.98562 1.05246 1.26098 0.99615 0.97816 1.07763 1.16653 0.85162 0.83246 0.77328 1.90837 1.46628 1.52616 1.49559 1.46092 1.10351 1.05855 1.73539 1.21170 0.80005 0.96628 0.97581 0.89463 1.22280 1.02086 1.01991 0.96130 1.21993 0.98367 0.92463 1.00743 0.90760 1.21414 0.94413 0.97338 1.00622 1.22177 0.99521 0.96085 1.00376 1.20791 0.83343 0.96007 0.95491 1.44001 1.02586 1.10754 1.73893 1.19113 0.91678 0.87417 1.40326 0.91784 1.25034 0.97950 0.97413 0.99049 1.70023 1.31146 1.11016 1.42326 0.86394 0.81072 0.79819 0.79625 1.20847 1.21650 1.21016 1.21011 0.96630 0.85953 0.94094 1.85259 0.89743 1.11441 1.68471 1.76437 1.26908 1.01159 1.30798 0.92033 0.92042 0.87950 0.80503 0.76136 0.91017 0.92704 0.91351 0.92139 0.93436 0.92774 0.93169 0.89613 0.96390 0.93557 0.93518 0.95509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.43 101.05 1.05 1.31 16 2 O -0.30 -2.97 10.51 -19.65 -0.21 -3.18 16 3 C 0.30 3.40 7.36 -18.42 -0.14 3.27 16 4 C -0.13 -1.45 10.09 -39.90 -0.40 -1.85 16 5 C -0.18 -2.12 6.74 -36.06 -0.24 -2.36 16 6 C 0.59 7.89 7.77 -12.66 -0.10 7.80 16 7 O -0.52 -8.24 16.61 5.25 0.09 -8.16 16 8 N -0.71 -9.02 5.01 -54.99 -0.28 -9.29 16 9 C 0.15 2.02 2.35 -67.93 -0.16 1.86 16 10 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 11 C -0.17 -2.16 8.76 37.15 0.33 -1.84 16 12 C -0.11 -1.78 2.27 -90.50 -0.21 -1.99 16 13 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.10 -1.55 4.89 -26.70 -0.13 -1.68 16 15 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 16 C 0.17 3.85 5.30 -3.71 -0.02 3.83 16 17 N -0.59 -13.88 2.99 -172.32 -0.52 -14.40 16 18 C -0.26 -6.69 9.58 -15.06 -0.14 -6.83 16 19 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 20 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 21 N -0.90 -25.42 11.20 55.49 0.62 -24.80 16 22 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.15 2.81 5.26 -3.71 -0.02 2.79 16 27 S 0.30 3.31 23.27 -107.50 -2.50 0.81 16 28 N -0.51 -6.04 11.03 29.19 0.32 -5.72 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.40 4.82 6.63 -40.82 -0.27 4.55 16 34 H 0.07 0.88 6.59 -51.93 -0.34 0.54 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.92 6.23 -51.93 -0.32 0.59 16 37 H 0.06 0.92 6.63 -51.93 -0.34 0.58 16 38 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 2.21 6.06 -51.93 -0.31 1.90 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 44 H 0.05 0.84 6.75 -51.93 -0.35 0.49 16 45 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -30.27 373.36 -8.73 -39.00 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.43 Total: 2.42 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -0.43 Total: 1.62 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.15 Total: -54.20 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.12 Total: -11.33 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.50 Total: 0.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.27 -8.73 -39.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025422785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.351 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds