Wall clock time and date at job start Sat Apr 11 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35965 * 117.00046 * 2 1 4 4 C 1.37560 * 120.83065 * 180.02562 * 3 2 1 5 5 C 1.38031 * 114.25506 * 179.97438 * 4 3 2 6 6 C 1.47116 * 127.76401 * 179.97438 * 5 4 3 7 7 O 1.21630 * 119.99629 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00331 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00249 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.46676 * 325.00306 * 9 8 6 11 11 C 1.53000 * 109.46858 * 84.99666 * 9 8 6 12 12 C 1.52992 * 109.47190 * 205.00206 * 9 8 6 13 13 H 1.09006 * 109.50035 * 60.06139 * 12 9 8 14 14 C 1.53040 * 109.52580 * 180.14492 * 12 9 8 15 15 C 1.53039 * 109.54198 * 181.32921 * 14 12 9 16 16 C 1.53622 * 109.24473 * 298.51455 * 15 14 12 17 17 N 1.46924 * 108.54399 * 54.84806 * 16 15 14 18 18 C 1.36946 * 120.62919 * 126.37114 * 17 16 15 19 19 H 1.08001 * 119.99879 * 207.53220 * 18 17 16 20 20 C 1.38814 * 119.99719 * 27.52961 * 18 17 16 21 21 N 1.31620 * 119.99709 * 25.84717 * 20 18 17 22 22 Si 1.86797 * 119.99712 * 205.56717 * 20 18 17 23 23 H 1.48493 * 109.47196 * 60.00574 * 22 20 18 24 24 H 1.48500 * 109.46719 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47268 * 299.99796 * 22 20 18 26 26 C 1.46928 * 118.74378 * 306.10142 * 17 16 15 27 27 S 1.77239 * 104.47996 * 0.26105 * 5 4 3 28 28 N 1.30370 * 120.82156 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.46652 * 299.99586 * 1 2 3 30 30 H 1.08994 * 109.47254 * 60.00005 * 1 2 3 31 31 H 1.09005 * 109.46964 * 180.02562 * 1 2 3 32 32 H 1.08005 * 122.87404 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99869 * 0.02562 * 8 6 5 34 34 H 1.08999 * 109.46590 * 60.00835 * 11 9 8 35 35 H 1.09006 * 109.46656 * 179.97438 * 11 9 8 36 36 H 1.08994 * 109.47590 * 300.00087 * 11 9 8 37 37 H 1.08999 * 109.46221 * 301.35296 * 14 12 9 38 38 H 1.09003 * 109.45556 * 61.30999 * 14 12 9 39 39 H 1.09004 * 109.49499 * 58.58593 * 15 14 12 40 40 H 1.08994 * 109.49949 * 178.64805 * 15 14 12 41 41 H 1.09007 * 109.73672 * 295.11836 * 16 15 14 42 42 H 1.08997 * 109.67035 * 174.54572 * 16 15 14 43 43 H 0.96992 * 120.00366 * 4.05609 * 21 20 18 44 44 H 1.08992 * 109.58848 * 173.64203 * 26 17 16 45 45 H 1.08997 * 109.58525 * 294.06878 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4189 1.3033 -0.0005 5 6 3.9006 2.5969 -0.0010 6 6 5.3049 3.0353 -0.0011 7 8 6.1993 2.2110 -0.0012 8 7 5.6003 4.3503 -0.0011 9 6 6.9988 4.7869 -0.0018 10 1 7.5968 4.0914 0.5873 11 6 7.5223 4.8189 -1.4391 12 6 7.0963 6.1866 0.6080 13 1 6.7245 6.1640 1.6324 14 6 8.5564 6.6454 0.6046 15 6 8.6588 8.0318 1.2446 16 6 7.8359 9.0326 0.4192 17 7 6.4630 8.5231 0.3004 18 6 5.3961 9.3017 0.6621 19 1 4.4802 8.8396 0.9997 20 6 5.4919 10.6849 0.5947 21 7 6.3342 11.2460 -0.2469 22 14 4.4198 11.7499 1.6927 23 1 4.7068 11.4394 3.1162 24 1 4.7107 13.1821 1.4296 25 1 2.9891 11.4749 1.4047 26 6 6.2561 7.1645 -0.2195 27 16 2.4470 3.6111 0.0071 28 7 1.3520 2.3149 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0644 0.4374 -0.0006 33 1 4.8870 5.0077 -0.0007 34 1 6.9243 5.5144 -2.0280 35 1 8.5627 5.1442 -1.4396 36 1 7.4528 3.8217 -1.8735 37 1 9.1607 5.9379 1.1722 38 1 8.9200 6.6916 -0.4220 39 1 8.2722 7.9918 2.2630 40 1 9.7018 8.3476 1.2636 41 1 8.2735 9.1386 -0.5736 42 1 7.8245 10.0002 0.9210 43 1 6.8450 10.6958 -0.8609 44 1 5.2020 6.8991 -0.1391 45 1 6.5674 7.1213 -1.2631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025422791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:11 Heat of formation + Delta-G solvation = -10.813496 kcal Electronic energy + Delta-G solvation = -27291.300814 eV Core-core repulsion = 23436.674991 eV Total energy + Delta-G solvation = -3854.625823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.57734 -40.01226 -38.27616 -36.74283 -35.47513 -33.35595 -31.93017 -30.86826 -30.44752 -28.45721 -28.14910 -25.58699 -25.13050 -23.80445 -22.47519 -21.79431 -20.49020 -20.18503 -18.97889 -18.66754 -18.00630 -17.41407 -16.57871 -16.48452 -16.12751 -15.27813 -15.07432 -14.68859 -14.56785 -14.29438 -13.87851 -13.73766 -13.67051 -13.61332 -13.38385 -12.89429 -12.66656 -12.41050 -12.25855 -12.09506 -11.76986 -11.64214 -11.46457 -11.14453 -11.09361 -10.89107 -10.62968 -10.48589 -10.33465 -10.22501 -10.07556 -10.04526 -9.95133 -9.86081 -9.30315 -9.18210 -8.71011 -8.38679 -6.90935 -6.12809 -3.26556 -0.16478 0.85884 1.22932 1.91210 2.54540 2.83757 3.08738 3.46981 3.50523 3.68247 4.26834 4.53585 4.62633 4.78458 4.86425 4.88524 4.93414 5.06686 5.18375 5.23788 5.30302 5.36012 5.42207 5.52871 5.55133 5.69050 5.75094 5.82122 5.96314 6.04035 6.06728 6.14862 6.29352 6.40878 6.42849 6.46553 6.59723 6.65369 6.65844 6.76900 7.06427 7.16975 7.25924 7.88416 7.95488 8.53651 9.07029 9.80527 10.25161 11.17520 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.002978 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.992213 B = 9401.457789 C =11201.081022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.295 6.295 3 C 0.303 3.697 4 C -0.130 4.130 5 C -0.182 4.182 6 C 0.593 3.407 7 O -0.519 6.519 8 N -0.708 5.708 9 C 0.150 3.850 10 H 0.088 0.912 11 C -0.167 4.167 12 C -0.115 4.115 13 H 0.075 0.925 14 C -0.101 4.101 15 C -0.137 4.137 16 C 0.149 3.851 17 N -0.597 5.597 18 C -0.354 4.354 19 H 0.056 0.944 20 C -0.022 4.022 21 N -0.914 5.914 22 Si 1.063 2.937 23 H -0.293 1.293 24 H -0.286 1.286 25 H -0.292 1.292 26 C 0.152 3.848 27 S 0.302 5.698 28 N -0.510 5.510 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.178 0.822 33 H 0.403 0.597 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.017 0.983 42 H 0.078 0.922 43 H 0.269 0.731 44 H 0.048 0.952 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -19.079 -0.010 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.201 6.201 3 C 0.090 3.910 4 C -0.168 4.168 5 C -0.314 4.314 6 C 0.377 3.623 7 O -0.396 6.396 8 N -0.360 5.360 9 C 0.046 3.954 10 H 0.106 0.894 11 C -0.225 4.225 12 C -0.135 4.135 13 H 0.093 0.907 14 C -0.139 4.139 15 C -0.176 4.176 16 C 0.023 3.977 17 N -0.321 5.321 18 C -0.482 4.482 19 H 0.073 0.927 20 C -0.225 4.225 21 N -0.553 5.553 22 Si 0.893 3.107 23 H -0.220 1.220 24 H -0.211 1.211 25 H -0.219 1.219 26 C 0.026 3.974 27 S 0.451 5.549 28 N -0.352 5.352 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.195 0.805 33 H 0.239 0.761 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.020 -16.710 0.436 17.767 hybrid contribution 0.549 -2.736 -0.438 2.825 sum -5.471 -19.446 -0.002 20.201 Atomic orbital electron populations 1.23000 0.76582 1.03675 1.02696 1.86309 1.23094 1.22464 1.88247 1.19909 0.89786 0.85323 0.95991 1.20736 0.92328 0.98537 1.05185 1.26081 0.99592 0.97853 1.07893 1.16656 0.85203 0.83205 0.77269 1.90835 1.46647 1.52606 1.49538 1.46104 1.10302 1.05922 1.73625 1.21145 0.80156 0.96522 0.97537 0.89386 1.22282 1.02012 1.02072 0.96132 1.21975 0.98199 0.92466 1.00900 0.90666 1.21431 0.94553 0.97111 1.00770 1.22133 0.99338 0.95808 1.00361 1.21057 0.84078 0.96520 0.96013 1.44084 1.01904 1.11703 1.74366 1.19936 0.94936 0.90278 1.43094 0.92657 1.25827 1.01909 0.95081 0.99647 1.70793 1.28144 1.38493 1.17910 0.83540 0.75092 0.76273 0.75775 1.22049 1.21114 1.21948 1.20964 0.96274 0.85911 0.94261 1.85289 0.89726 1.11415 1.68423 1.76444 1.26889 1.01149 1.30742 0.92026 0.92025 0.87933 0.80491 0.76070 0.91549 0.90991 0.92561 0.93110 0.92058 0.92366 0.92952 0.96511 0.90349 0.91982 0.93358 0.95811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.43 101.05 1.05 1.31 16 2 O -0.30 -2.99 10.51 -19.63 -0.21 -3.19 16 3 C 0.30 3.43 7.36 -18.42 -0.14 3.29 16 4 C -0.13 -1.45 10.09 -39.90 -0.40 -1.85 16 5 C -0.18 -2.16 6.74 -36.06 -0.24 -2.40 16 6 C 0.59 7.97 7.77 -12.66 -0.10 7.87 16 7 O -0.52 -8.25 16.61 5.25 0.09 -8.17 16 8 N -0.71 -9.15 4.99 -54.98 -0.27 -9.43 16 9 C 0.15 2.02 2.41 -67.93 -0.16 1.86 16 10 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 11 C -0.17 -2.13 8.79 37.16 0.33 -1.81 16 12 C -0.11 -1.78 2.33 -90.50 -0.21 -1.99 16 13 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 14 C -0.10 -1.53 4.77 -26.69 -0.13 -1.65 16 15 C -0.14 -2.43 6.10 -26.39 -0.16 -2.59 16 16 C 0.15 3.31 4.72 -3.49 -0.02 3.30 16 17 N -0.60 -14.00 2.85 -172.05 -0.49 -14.49 16 18 C -0.35 -9.39 9.49 -15.05 -0.14 -9.54 16 19 H 0.06 1.47 7.95 -52.49 -0.42 1.05 16 20 C -0.02 -0.61 4.66 -17.43 -0.08 -0.69 16 21 N -0.91 -26.58 12.46 55.49 0.69 -25.88 16 22 Si 1.06 24.55 29.99 -169.99 -5.10 19.45 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.15 2.87 5.29 -3.71 -0.02 2.85 16 27 S 0.30 3.39 23.27 -107.50 -2.50 0.89 16 28 N -0.51 -6.10 11.03 29.19 0.32 -5.77 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.18 1.76 8.06 -52.48 -0.42 1.33 16 33 H 0.40 4.98 6.33 -40.82 -0.26 4.72 16 34 H 0.07 0.88 6.32 -51.93 -0.33 0.55 16 35 H 0.07 0.86 6.46 -51.93 -0.34 0.53 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.91 6.50 -51.93 -0.34 0.57 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.02 0.38 7.87 -51.93 -0.41 -0.03 16 42 H 0.08 1.98 6.31 -51.93 -0.33 1.65 16 43 H 0.27 7.87 6.69 -40.82 -0.27 7.59 16 44 H 0.05 0.89 6.52 -51.93 -0.34 0.55 16 45 H 0.02 0.45 6.18 -51.93 -0.32 0.13 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -30.96 371.84 -8.63 -39.59 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.34 Total: 3.45 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.42 Total: -2.04 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.25 Total: -55.57 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.12 Total: -11.36 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.10 Total: 19.45 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.50 Total: 0.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.96 -8.63 -39.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025422791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.773 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds